View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_high_19 (Length: 268)
Name: NF12671_high_19
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 23188675 - 23188825
Alignment:
| Q |
55 |
tttgctaattgacaattctcttgtttagattctaatgcaattggaaggcatggaaacaggaagaggaatctactagtaattgttattttgatctcatttc |
154 |
Q |
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| T |
23188675 |
tttgctaattgacaattctcttcttcagattctaatgcaattggaagacaaggaaacgggaagaggaatctacttataattgttattttgatctcatttc |
23188774 |
T |
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| Q |
155 |
tactatttcttttactgctttgcctatttgtttaccggactagaaagcaaa |
205 |
Q |
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| T |
23188775 |
tactatttcttttactgctttgcctatttgtttaccgaactagaaagcaaa |
23188825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 23180483 - 23180640
Alignment:
| Q |
48 |
gaagaattttgctaattgacaattctcttgtttagattctaatgcaattggaaggcatggaaacaggaagaggaatctactagtaattgttattttgatc |
147 |
Q |
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| T |
23180483 |
gaagtattttgctaattgataattctccttttcagattctaatgcaattggaagacatggaaacgggaagaggaatctacttgtaattgttattttgatc |
23180582 |
T |
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| Q |
148 |
tcatttctactatttcttttactgctttgcctatttgtttaccggactagaaagcaaa |
205 |
Q |
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| T |
23180583 |
tcatttctactatttcttgtactggtttgcctatttgtttaccggactagaaagcaaa |
23180640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 21181285 - 21181170
Alignment:
| Q |
90 |
tgcaattggaaggcatggaaacaggaagaggaatctactagtaattgttattttgatctcatttctactatttcttttactgctttgcctatttgtttac |
189 |
Q |
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| T |
21181285 |
tgcagttggaagacatgaaaacaggaagaggaatctaattctaattgctactttgatctcatttctaatattgcttatactgattggtttatttgtttac |
21181186 |
T |
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| Q |
190 |
cggactagaaagcaaa |
205 |
Q |
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| T |
21181185 |
tggactagaaagcaaa |
21181170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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