View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_high_2 (Length: 719)
Name: NF12671_high_2
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 24 - 323
Target Start/End: Complemental strand, 19729264 - 19728965
Alignment:
| Q |
24 |
gcacaacccccgggagccctaacaaatttctcagggctccagagggcatccttcattctttcgtggagttcatgatctataagcctgttggcaggcctac |
123 |
Q |
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| T |
19729264 |
gcacaacctccgggagccctaacaaatttctcagggctccagagggcatccttcattctttcgtggagttcatgatctataagcctattggcaggcctac |
19729165 |
T |
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| Q |
124 |
ctgaaggcacaaaagcatgttgtgcagctccaaagcaacaaacaagaggaggccaaccgtaggtatcacttatgtcctctccatcatatttttccagatc |
223 |
Q |
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| T |
19729164 |
ctgaaggcacaaaagcatgttgtgcagctccaaagcaacaaacaagaggaggccaaccgtaggtatcacttatgtcctctccatcatatttttccagatc |
19729065 |
T |
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| Q |
224 |
caaaccatcgtcaatctcatcctccacattttcaataaaggaaggctcgtctatgtcaccgatttcggcttcaccaccacctttatcctctaaaattata |
323 |
Q |
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| T |
19729064 |
caaaccatcgtcaatctcatcctccacattttcaataaaggaaggctcgtctatgtcactgatttcggcttcaccaccacctttatcctctaaaattata |
19728965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 494 - 708
Target Start/End: Complemental strand, 19728794 - 19728583
Alignment:
| Q |
494 |
gcgattagattaccttttttccgagtctttcgtgttttcttctcagaaccatctccagagggagatgagccttctacaatagaagcactatctacattta |
593 |
Q |
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| T |
19728794 |
gcgattagattaccttttttccgagtctttcgtgttttcttctcagaaccatccccagagggagatgagccttctacaatagacgcactatctacattta |
19728695 |
T |
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| Q |
594 |
tcaacaaatcaattgcctcttcaggagactccgctttcgattttttcttcgtcgtctttgccgacaccttcttaggtttagatgccttagttgctttcct |
693 |
Q |
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| T |
19728694 |
ccaacaaatcaattgccccttcaggagactcatctattgattttttct---tagtctttgccgacaccttcttaggtttagatgctttagttgctttctt |
19728598 |
T |
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| Q |
694 |
ttccaccacaggttc |
708 |
Q |
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| T |
19728597 |
ttccaccacaggttc |
19728583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 19728891 - 19728857
Alignment:
| Q |
397 |
cagaactagatgcatctataaaccatatcaaggtt |
431 |
Q |
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| T |
19728891 |
cagaactagatgcatctataaaccatatcaaggtt |
19728857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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