View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12671_high_22 (Length: 245)
Name: NF12671_high_22
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 41602299 - 41602533
Alignment:
| Q |
1 |
ttatgttggaggtgcaactctcagttgctagattcctcaacctctttcagatctgtaagcaattgacgcacaattgccccatatgtcagagtaaacagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41602299 |
ttatgttggaggtgcaactctcagttgctagattcctcaacctctttcagatctgtaagcaattgatgcacaattgccccatatgtcagagtaaacagct |
41602398 |
T |
|
| Q |
101 |
ccgcattaacgtgttcgatgttagcaaatattgcatcgccggatcgaggagcaacatgggccattattagactcactcaggtttgctttggttgagattt |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41602399 |
ctgcattaacgtgttcgatgttagcaaatattgcatcgccggatcgaggagcaacatgggccattattagactcactcatgtttgctttggttgagattt |
41602498 |
T |
|
| Q |
201 |
tccgattgtggctgtgactcggttgcaacagtgaa |
235 |
Q |
| |
|
| || ||||||||||||| |||||||||| ||||| |
|
|
| T |
41602499 |
ttcgtttgtggctgtgacccggttgcaaccgtgaa |
41602533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 9470913 - 9470679
Alignment:
| Q |
1 |
ttatgttggaggtgcaactctcagttgctagattcctcaacctctttcagatctgtaagcaattgacgcacaattgccccatatgtcagagtaaacagct |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
9470913 |
ttatgttggaggtgcaaccctcacttgctagattcctcaacctctttcagatctgtaagcaattgatgcacaattgtcccatatgttagagtaaacagct |
9470814 |
T |
|
| Q |
101 |
ccgcattaacgtgttcgatgttagcaaatattgcatcgccggatcgaggagcaacatgggccattattagactcactcaggtttgctttggttgagattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9470813 |
ccgcattaacgtgttcgatgttagcaaatattgcatcgccggatcgaggagcaacaggggccattattagactcactcaagtttgctttggttgagattt |
9470714 |
T |
|
| Q |
201 |
tccgattgtggctgtgactcggttgcaacagtgaa |
235 |
Q |
| |
|
| || ||||||||||||| |||||||||| ||||| |
|
|
| T |
9470713 |
ttcggttgtggctgtgacccggttgcaaccgtgaa |
9470679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 31425734 - 31425615
Alignment:
| Q |
37 |
tcaacctctttcagatctgtaagcaattgacgcacaattgccccatatgtcagagtaaacagctccgcattaacgtgttcgatgttagcaaatattgcat |
136 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| |||||||| |||||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
31425734 |
tcaacctcttcgagatctgtgagcaattgacgaacaattgcaccatatgtgagagtaaagagctccgcattaacgcgttcaatgttagcaaatattgcat |
31425635 |
T |
|
| Q |
137 |
cgccggatcgaggagcaaca |
156 |
Q |
| |
|
|||| | ||||||||||||| |
|
|
| T |
31425634 |
cgccagttcgaggagcaaca |
31425615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 10002057 - 10001987
Alignment:
| Q |
37 |
tcaacctctttcagatctgtaagcaattgacgcacaattgccccatatgtcagagtaaacagctccgcatt |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
10002057 |
tcaacctcttccagatctgtaagcaattgacgcacaattgccccatatgtcagagtaaacagttctgcatt |
10001987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 10001858 - 10001775
Alignment:
| Q |
108 |
aacgtgttcgatgttagcaaatattgcatcgccggatcgaggagcaacatgggccattattaga-ctcactcaggtttgctttg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||| | ||||| ||||| ||||||| |||||| |||| |
|
|
| T |
10001858 |
aacgtgttcgatgttagcaaatattgcatcaccagatcgaggagcaacaggagccatagttagagctcactctggtttgttttg |
10001775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University