View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_high_25 (Length: 207)
Name: NF12671_high_25
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 40660809 - 40660654
Alignment:
| Q |
38 |
acatcacagaagaaataggaagtaat-gaaaaggcagcagccataaccaagatcaacatcttagagatataggagttatagattacgcgctagtttttta |
136 |
Q |
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| T |
40660809 |
acatcacagaagaaataggaagcaatagaaaaggcagcagccataaccaagatcaacatcttagagatataggagttatagattacgcgctagtttttta |
40660710 |
T |
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| Q |
137 |
ctactacctccggtttgttatacaatagacatcatgtacatttgttatgattgcaa |
192 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40660709 |
ctactacctccggttttttatacaatagacatcatgtacatttgttatgattgcaa |
40660654 |
T |
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