View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_high_4 (Length: 506)
Name: NF12671_high_4
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 17 - 494
Target Start/End: Original strand, 3978527 - 3979003
Alignment:
| Q |
17 |
ctctcttctgtccataatctccatgcctataatggtaagaatcatattagtgagtaagcaacgattcgagtatttgtgtttgattttgcagtgtcgaaag |
116 |
Q |
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| T |
3978527 |
ctctcttctgtccataatctccatgcctataatggtaagaatcatattagtgagtaagcaacgattcgagtatt-gtgtttgattttgcagtgtcgaaag |
3978625 |
T |
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| Q |
117 |
ttgattttgaataaaacttttttgtaaagtttatttcggttaatagttggatgtaaaatgatttatggatgacaaaagtaaaaccgaacattgactaaat |
216 |
Q |
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| T |
3978626 |
ttgattttgaataaaacttttttgtgaagtttatttcggttaatagttggatgtaaaatgatttatggatgacaaaagtaaaaccgaacattgactaaat |
3978725 |
T |
|
| Q |
217 |
aagcaagtttgtgaattcaatatgcttacatatccaagaagatagttggaatattctgagtctgaaaaatctctattcttctttccggacacaatctcca |
316 |
Q |
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| T |
3978726 |
aagcaagtttgtgaattcaatatgcttacatatccaagaagatagttggaatattctgagtctgaaaaatctctattcttctttccggacacaatctcca |
3978825 |
T |
|
| Q |
317 |
gtactatcacaccataactaaaaacatctgatttcgttgagaaatgtccactcctagcgtactctggaggcatgtaaccgctgaatatataattttcaaa |
416 |
Q |
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| T |
3978826 |
gtactatcacaccataactaaagacatctgatttcgttgagaaatgtccactcctagcgtactctggaggcatgtaaccgctgaatatataattttcaaa |
3978925 |
T |
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| Q |
417 |
gtaagtattactcgacggtgcaataatcaagagttataatcgagtagaaactaacttactatgttccggccaccctat |
494 |
Q |
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| T |
3978926 |
gtacgtattactcgacggtgcaataatcaagagccataatcgagtagaaactaacttactatgttccggccaccctat |
3979003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 276 - 426
Target Start/End: Original strand, 3983455 - 3983605
Alignment:
| Q |
276 |
gtctgaaaaatctctattcttctttccggacacaatctccagtactatcacaccataactaaaaacatctgatttcgttgagaaatgtccactcctagcg |
375 |
Q |
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||||||||| ||||||||||||||| |||||| ||||| |||| ||||||||||||| ||| |||||||||||||| |||||| ||||||||||||| |
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| T |
3983455 |
gtctgaaaattctctattcttctttacggacataatctatggtaccatcacaccataaccaaagacatctgatttcgtagagaaacgtccactcctagca |
3983554 |
T |
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| Q |
376 |
tactctggaggcatgtaaccgctgaatatataattttcaaagtaagtatta |
426 |
Q |
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| T |
3983555 |
tactctggaggcatgtaaccgctgaatatataattttcaaactaagtatta |
3983605 |
T |
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