View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_high_6 (Length: 420)
Name: NF12671_high_6
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 51204837 - 51204635
Alignment:
| Q |
12 |
acagaacaaaaacaatgttgttggtgttcggtcggaccccaaactcccttgtgatcccgtccgtcaccacccagtttcacggctttggtnnnnnnngaag |
111 |
Q |
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| T |
51204837 |
acagaacaaaaacaatgttgttggtgttcggtcggaccccaaactcccctgtgatcccgtc----accacccagtttcacgg----ggtaaaaaaagaaa |
51204746 |
T |
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| Q |
112 |
aagctgtcagtcaactatttcaagaaaggaatcaattattatgatatgactcattaaatcatctcataataatagtttattttattttattgttacacga |
211 |
Q |
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| T |
51204745 |
aagctgtctgtcaactatttcaagaaaggaatcaattattatgatatgactcataaaa-----tcataataatag-----tttattttattgttacacgg |
51204656 |
T |
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| Q |
212 |
acgaagctcataattcttctt |
232 |
Q |
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||| ||||||||||||||||| |
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| T |
51204655 |
acgtagctcataattcttctt |
51204635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 285 - 388
Target Start/End: Complemental strand, 51204361 - 51204262
Alignment:
| Q |
285 |
aacggtgggtccaatcctattagcttatcatgctctcgtccccacctcataatttgttaatggaagaagattcattcattcccttgtaatatgctaaatt |
384 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51204361 |
aacggtgggtccaatcttattagcttatcatgctctcgtccccacctgataatttgttaatggaagaagattc----attcccttgtaatatgctaaatt |
51204266 |
T |
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