View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_10 (Length: 405)
Name: NF12671_low_10
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 392
Target Start/End: Original strand, 27477506 - 27477887
Alignment:
| Q |
14 |
acatcacatctacaattcaaagaaagacttgtataacaatcaaacaacattcggttaatgcttcacatgcatacaagcttccttacagtcaaaatgtgcg |
113 |
Q |
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| T |
27477506 |
acatcacatctacaattcaaagaaagacttgtataacaatcaaacaacattcggttaatgcttcacatac--------ttccttacagtcaaaatgtgcg |
27477597 |
T |
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| Q |
114 |
agaatttcgccaccacaaaaattagatttattcacatacttcttttatgcctaatgctaaatctcgcgagagttggtatc-----------gcgaactca |
202 |
Q |
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| T |
27477598 |
agaatttcgccaccacaaaaattagatttattcacatacttcttttatgcctaatgctaaatctcgcgagagttggtatcacgaatggattgcgaactca |
27477697 |
T |
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| Q |
203 |
gctgattggttgttatcacatactgcattggtattttccggtaaataaggaagtggggacacgttgcttgccttttaaaagcaacacgacagcttcgtgg |
302 |
Q |
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| T |
27477698 |
gctgattggttgttatcacatactgcattgatattttccggtaaataaggaagtggggacacgttgcttgccttttaaaagcaacacgacagcttcgtgg |
27477797 |
T |
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| Q |
303 |
aatttcacaatggaattattcgcttgaaatagcattgctcttcttataaactatttccaagttccttcaagatccacatttgtctcttct |
392 |
Q |
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| T |
27477798 |
aatttcacaatggaattattcgcttgaaatagcattgctcttcttataaactatttccaagttccttcaagatccacatttgtctcttct |
27477887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 206 - 342
Target Start/End: Original strand, 35752646 - 35752782
Alignment:
| Q |
206 |
gattggttgttatcacatactgcattggtattttccggtaaataaggaagtggggacacgttgcttgccttttaaaagcaacacgacagcttcgtggaat |
305 |
Q |
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|||||||||| ||||||| |||||||| ||||| || |||||||||||||||||| || | ||| ||||||||||||||||||| || | ||| ||||| |
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| T |
35752646 |
gattggttgtaatcacattctgcattgatatttccctgtaaataaggaagtggggtcatgctgcaagccttttaaaagcaacacgtcaacatcgcggaat |
35752745 |
T |
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| Q |
306 |
ttcacaatggaattattcgcttgaaatagcattgctc |
342 |
Q |
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| T |
35752746 |
ttcacaatggaattattcgcttggaatagcattgctc |
35752782 |
T |
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