View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_11 (Length: 401)
Name: NF12671_low_11
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 6486185 - 6485792
Alignment:
| Q |
1 |
aagaatcttcaagaatattgcggattcaaatccaacagtggactggtgaaagcaatcataatatccggtcaaaagatcttcactggtcaccaagacggta |
100 |
Q |
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| T |
6486185 |
aagaatcttcaagaatattgcggattcaaatccaacagtggactggtgaaagcaatcataatatccggtcaaaagatcttcactggtcaccaagacggta |
6486086 |
T |
|
| Q |
101 |
aaatccgtgtttggaaagtttctctcaagaaccctagcgttcacaaacgtgccggaacattaccaacactcaaagacatcttcaaaagctcgattaaacc |
200 |
Q |
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| T |
6486085 |
aaatccgtgtttggaaagtctctctcaagaaccctagcgttcacaaacgtgctggaacattaccaacactcaaagacatcttcaaaagctcaattaaacc |
6485986 |
T |
|
| Q |
201 |
aagcaattatgtcgaggttagaaaacaccgaactgcattatggatcaaacattcggatgcagtttcatgcctaagcctttctccagacaaaacctacctc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6485985 |
aagcaattatgtcgaggttagaaaacaccgaactgcattatggatcaaacattcggatgcagtttcatgcctaagtctttctccagacaaaacctacctc |
6485886 |
T |
|
| Q |
301 |
tactctgcttcatgggacagaaccgtcaaagtttggagaatcgccgattcaaagtgcttggaatccattacttcccatgaggatgcagtgaacg |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6485885 |
tactctgcttcatgggacagaaccgtcaaagtttggagaatcgccgattcaaagtgcttggaatccattacttcccatgaggatgcagttaacg |
6485792 |
T |
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