View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_12 (Length: 397)
Name: NF12671_low_12
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 26399782 - 26399992
Alignment:
| Q |
1 |
ttcctacatcataagcaatacaacaacatcaacaatttttccatataatgaaagatgcaaactgatttaacttactagtacaactttatgagttaagatc |
100 |
Q |
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| T |
26399782 |
ttcctacatcataagcaatacaacaacatcaacaatttttccatataatgaaagatgcaaactgatttaacttacttgtacaactttatgagttaagatc |
26399881 |
T |
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| Q |
101 |
ctctccatttcttccattcgaaaagatcacgacacagtgaagtttgaaaaaacatataaataattaataatggtgggacctacaaagtggtaggactcac |
200 |
Q |
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| T |
26399882 |
ctctccatttctttcattcggaaagatcaagacacaatgaagtttgaaaaaacatataaataattaatagtggtgggacctactaagtggtaggactcac |
26399981 |
T |
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| Q |
201 |
tatgtatactt |
211 |
Q |
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||| ||||||| |
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| T |
26399982 |
tatatatactt |
26399992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 210 - 359
Target Start/End: Original strand, 26400030 - 26400179
Alignment:
| Q |
210 |
ttatatctctttaaatggttaattaggtgcagaaagtaagtttgataccataagagcttaaagaatatcttactattttgacatcagaatataaatcatt |
309 |
Q |
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| T |
26400030 |
ttatatctctttaaatggttaattaggtgcagaaagtaagtttgataccataagagcttaaagaatatcttactattttgacatcagaatataaatcatt |
26400129 |
T |
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| Q |
310 |
tcttaatactggttaatgtatttacacttttcgtatgtggcaaaggcacc |
359 |
Q |
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| T |
26400130 |
tcttaatactggttaatgtatttacacttttcgtatgtggcaaaggcacc |
26400179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 30270947 - 30271017
Alignment:
| Q |
3 |
cctacatcataagcaatacaacaacatcaacaatttttccatataatgaaagatgcaaactgatttaactta |
74 |
Q |
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| T |
30270947 |
cctacatcataagaaagacaacaa-atcaacaatttttccatattatagaagatgcaaacttatttaactta |
30271017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 30271074 - 30271141
Alignment:
| Q |
231 |
attaggtgcagaaagtaagtttgata-ccata-agagcttaaagaatatcttactattttgacatcag |
296 |
Q |
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| T |
30271074 |
attaggtgcagaaagcaagtttgatacccatacaaagcttaaaaaatactttactattttgacatcag |
30271141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 5047472 - 5047418
Alignment:
| Q |
140 |
aagtttgaaaaaacatataaataattaataatggtgggacctacaaagtggtagga |
195 |
Q |
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| T |
5047472 |
aagtttgaaaaaatata-aaataattaatgatggtgggacccacatagtggtagga |
5047418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 24782124 - 24782194
Alignment:
| Q |
90 |
gagttaagatcctctccatttcttccattcgaaaagatcacgacacagtgaagtttgaaaaaacatataaa |
160 |
Q |
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| T |
24782124 |
gagttaggatcctctccatttattccatttggaaagataaagacacaaagaagtttgaaataaaatataaa |
24782194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 4888456 - 4888513
Alignment:
| Q |
147 |
aaaaaacatataa-ataattaataatggtgggacctacaaagtggtaggactcactat |
203 |
Q |
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| T |
4888456 |
aaaaaacataaaatataattaatgatggtgggacctacttagtggtaggacccactat |
4888513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 36733020 - 36733064
Alignment:
| Q |
134 |
acagtgaagtttgaaaaaacatataaataattaataatggtggga |
178 |
Q |
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| T |
36733020 |
acagtaaagtttgaaaaaaaatataaataattaatagttgtggga |
36733064 |
T |
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