View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_13 (Length: 388)
Name: NF12671_low_13
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 47918796 - 47918429
Alignment:
| Q |
1 |
tcaatgttttaatattcatgtctttgcaactgcgaccacaatggaatgtataagccgcatttgacagattcaatggaccaaagaatataacaagtctgga |
100 |
Q |
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| T |
47918796 |
tcaatgttttaatattcatgtctttgcaactgcgaccacaatggaatgtataagccgcatttgacagattcaatggaccaaagaatataacaagtctgga |
47918697 |
T |
|
| Q |
101 |
acaaaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaacttgggaaaatggaaagnnnn |
200 |
Q |
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| T |
47918696 |
acaaaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaatat----acataaaaa----- |
47918606 |
T |
|
| Q |
201 |
nnntataatcttgatttatattactaatactctgactgcaattttttataatatcatacattgcagcagcaatttcaaaagcttaattagtacctgaatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918605 |
-aatataatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagcttaattagtacctgaatt |
47918507 |
T |
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| Q |
301 |
atgccggaatggtcaccctttgagtgcttttcgaacccttataggctcaacaggttcatctcccctattttgtctctg |
378 |
Q |
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| T |
47918506 |
atgccggaatggtcaccctttgagtgcttttcgaacctttataggctcaacaggttcatctcccctattttgtctctg |
47918429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 6932600 - 6932520
Alignment:
| Q |
64 |
acagattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaataa---aaaagagtttatacataa |
141 |
Q |
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| T |
6932600 |
acagattcaattgactaaagaatataccaagtctggaacaaaagaatatattggcaataaaaaaaaagagtttatacataa |
6932520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 6 - 328
Target Start/End: Original strand, 29918375 - 29918694
Alignment:
| Q |
6 |
gttttaatattcatgtctttgcaactgcgaccacaatggaatgtataagccgcatttgacagattcaatggaccaaagaatataacaagtctggaacaaa |
105 |
Q |
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||||| ||||| |||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||||| ||| | ||||||||||||||||||| |
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| T |
29918375 |
gtttttatattgatgtctttgcaactgcgaccgcaatggattgcataagccgcatttaacagattcaatggattaaaccagataacaagtctggaacaaa |
29918474 |
T |
|
| Q |
106 |
agaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaacttgggaaaatggaaagnnnnnnnta |
205 |
Q |
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| T |
29918475 |
agaatacatcggcaat--aaaagagtttatacataaaaagtc-ttcacttcacatagaattggacataaataggtgtgagaaaatggaaa---ataattt |
29918568 |
T |
|
| Q |
206 |
taatcttgatttatattactaatactctgactgcaattttttataatatcatacattgcagcagcaatttcaaaagct---taattagtacctgaattat |
302 |
Q |
| |
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|||||||||||||||||||||| |||| |||| | ||||||||||| ||||| || |||||||||||||||||| | || |||||||||||||||| |
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| T |
29918569 |
gaatcttgatttatattactaattctctaactgaatttttttataatttcatagatcacagcagcaatttcaaaagtttagtacttagtacctgaattat |
29918668 |
T |
|
| Q |
303 |
gccggaatggtcaccctttgagtgct |
328 |
Q |
| |
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||| | |||||||||| ||||||||| |
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| T |
29918669 |
gccagcatggtcaccccttgagtgct |
29918694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 508662 - 508582
Alignment:
| Q |
64 |
acagattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaataa---aaaagagtttatacataa |
141 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||| |
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| T |
508662 |
acagattcaattgactaaagaatataccaagtctggaacaaaagaatatattggcaataaaaaaaaagagtttatacataa |
508582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 29918750 - 29918803
Alignment:
| Q |
325 |
tgcttttcgaacccttataggctcaacaggttcatctcccctattttgtctctg |
378 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
29918750 |
tgctttttgaacctttataggctcaacaggttcatcacccctattttgtctctg |
29918803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 26291271 - 26291192
Alignment:
| Q |
66 |
agattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaataa----aaaagagtttatacataa |
141 |
Q |
| |
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||||||||| ||| |||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||| |
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| T |
26291271 |
agattcaattgactaaagaatataccaagtctggaacaaaagaatatattggcaataaaaaaaaaagagtttatacataa |
26291192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 18290981 - 18290906
Alignment:
| Q |
66 |
agattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaa-taaaaaagagtttatacata |
140 |
Q |
| |
|
||||||||| ||| |||||||||||||||| ||||||||||||||| | || || |||||| ||||||||||||| |
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| T |
18290981 |
agattcaattgactaaagaatataacaagtttggaacaaaagaatatattgggaattaaaaaggagtttatacata |
18290906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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