View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12671_low_15 (Length: 361)

Name: NF12671_low_15
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12671_low_15
NF12671_low_15
[»] scaffold0026 (1 HSPs)
scaffold0026 (7-347)||(2431-2768)
[»] chr7 (10 HSPs)
chr7 (264-300)||(21835315-21835351)
chr7 (264-300)||(2751435-2751471)
chr7 (264-300)||(3851921-3851957)
chr7 (264-300)||(7275441-7275477)
chr7 (264-300)||(16374158-16374194)
chr7 (264-300)||(22120052-22120088)
chr7 (264-300)||(28089983-28090019)
chr7 (268-300)||(31197758-31197790)
chr7 (264-300)||(31712903-31712939)
chr7 (264-300)||(40542911-40542947)
[»] chr6 (11 HSPs)
chr6 (256-300)||(9690639-9690683)
chr6 (265-300)||(9844099-9844134)
chr6 (264-300)||(3222637-3222673)
chr6 (264-300)||(9239135-9239171)
chr6 (264-300)||(11449031-11449067)
chr6 (264-300)||(14213042-14213078)
chr6 (264-300)||(15360099-15360135)
chr6 (264-300)||(15730496-15730532)
chr6 (264-300)||(21982322-21982358)
chr6 (264-300)||(34147506-34147542)
chr6 (264-300)||(34160122-34160158)
[»] chr5 (14 HSPs)
chr5 (264-300)||(38630980-38631016)
chr5 (264-300)||(6014281-6014317)
chr5 (264-300)||(8484662-8484698)
chr5 (264-300)||(10631290-10631326)
chr5 (264-300)||(11926502-11926538)
chr5 (264-292)||(13659254-13659282)
chr5 (264-300)||(18207367-18207403)
chr5 (264-300)||(19456212-19456248)
chr5 (264-300)||(22693095-22693131)
chr5 (264-300)||(27498732-27498768)
chr5 (264-300)||(34310302-34310338)
chr5 (256-292)||(35425165-35425201)
chr5 (264-300)||(37495214-37495250)
chr5 (264-300)||(41351105-41351141)
[»] chr4 (13 HSPs)
chr4 (256-300)||(33696280-33696324)
chr4 (256-300)||(34723951-34723995)
chr4 (265-300)||(51595183-51595218)
chr4 (264-300)||(5609203-5609239)
chr4 (264-300)||(19660533-19660569)
chr4 (268-300)||(20566514-20566546)
chr4 (264-300)||(23639784-23639820)
chr4 (264-300)||(23645442-23645478)
chr4 (264-300)||(27528796-27528832)
chr4 (264-300)||(34844759-34844795)
chr4 (264-300)||(40058853-40058889)
chr4 (256-292)||(43719096-43719132)
chr4 (264-300)||(52983779-52983815)
[»] chr3 (15 HSPs)
chr3 (264-300)||(21363103-21363139)
chr3 (264-300)||(3747741-3747777)
chr3 (264-300)||(7485532-7485568)
chr3 (264-300)||(8097280-8097316)
chr3 (264-300)||(10083820-10083856)
chr3 (264-300)||(10190743-10190779)
chr3 (264-300)||(24165716-24165752)
chr3 (264-300)||(24407421-24407457)
chr3 (264-300)||(26174273-26174309)
chr3 (264-300)||(30807154-30807190)
chr3 (264-300)||(39041853-39041889)
chr3 (264-300)||(49258263-49258299)
chr3 (264-300)||(52821637-52821673)
chr3 (264-300)||(53424178-53424214)
chr3 (264-300)||(53848435-53848471)
[»] chr2 (7 HSPs)
chr2 (256-292)||(45132439-45132475)
chr2 (264-300)||(11941211-11941247)
chr2 (264-300)||(25293319-25293355)
chr2 (264-300)||(27290734-27290770)
chr2 (264-300)||(29361708-29361744)
chr2 (264-292)||(36242321-36242349)
chr2 (264-300)||(44946054-44946090)
[»] chr1 (8 HSPs)
chr1 (256-300)||(9500356-9500400)
chr1 (265-300)||(48699920-48699955)
chr1 (264-300)||(4621238-4621274)
chr1 (264-300)||(7766728-7766764)
chr1 (264-300)||(14603956-14603992)
chr1 (264-300)||(17935929-17935965)
chr1 (264-300)||(24122183-24122219)
chr1 (264-300)||(50202706-50202741)
[»] scaffold0576 (1 HSPs)
scaffold0576 (264-300)||(5083-5119)
[»] scaffold0070 (1 HSPs)
scaffold0070 (264-300)||(40484-40520)
[»] chr8 (8 HSPs)
chr8 (264-300)||(2639412-2639448)
chr8 (264-300)||(3734624-3734660)
chr8 (264-300)||(4718809-4718845)
chr8 (264-300)||(8765527-8765563)
chr8 (264-300)||(9713618-9713654)
chr8 (264-300)||(21603394-21603430)
chr8 (264-300)||(28193638-28193674)
chr8 (264-300)||(34237656-34237692)


Alignment Details
Target: scaffold0026 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 347
Target Start/End: Complemental strand, 2768 - 2431
Alignment:
Q  7 gaagcagagatgtactggtgatggctaaagttgggaaaacgggaacatataaatatgagccagtgaaactagattgtggtaatggaac---caccattca 103  Q
    |||||| ||||||||| |||||||||||||||||||||| ||||  ||||||||||||| ||||||||||||||||||||||   ||    | ||||||     
T  2768 gaagcacagatgtacttgtgatggctaaagttgggaaaaagggattatataaatatgaggcagtgaaactagattgtggtaaaaaaaaagaccccattcc 2669  T
Q  104 agaagttaaggataagcttaagcttgaaattgaggtgaaaagggatgaaacagatcttgaacttcattttggattgtatgaagtttggagtggaaaatgg 203  Q
    |||||||||||||||||||      ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2668 agaagttaaggataagctt------gaaattgaggtgaaaagtgatgaaacagatcttgaacttcattttggattgtatgaagtttggagtggaaaatgg 2575  T
Q  204 aaaggaggtttgaaaatctacaatgcagaagttgttaagaagtcttaaaactttggtcttctcggattaatcgattcttggatcggatatcgagtttnnn 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||       
T  2574 aaaggaggtttgaaaatctacaatgcagaagttgttaagaagtcttaaaactttggtcttctcggattagtcgattcttgaatcggatatcgagtttaaa 2475  T
Q  304 nnnnnnnncagagaagtcttaaaacttttaagaggtcatgatgt 347  Q
            ||||||||||||||||||||||||||||||||||||    
T  2474 aaaaaaaacagagaagtcttaaaacttttaagaggtcatgatgt 2431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 21835315 - 21835351
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| |||||||||||||||||||||||||||    
T  21835315 ctcggattagtcgattcttggatcggatatcgagttt 21835351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 2751435 - 2751471
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  2751435 ctcggattagtcgattcttggatcggataccgagttt 2751471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 3851921 - 3851957
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  3851921 ctcggattagtcgattcttggatcggataccgagttt 3851957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 7275441 - 7275477
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  7275441 ctcggattagtcgattcttggatcggataccgagttt 7275477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 16374158 - 16374194
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  16374158 ctcggattagtcgattcttggatcggataccgagttt 16374194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 22120052 - 22120088
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  22120052 ctcggattagtcgattcttggatcggataccgagttt 22120088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 28089983 - 28090019
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  28089983 ctcggattagtcgattcttggatcggataccgagttt 28090019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 31197758 - 31197790
Alignment:
Q  268 gattaatcgattcttggatcggatatcgagttt 300  Q
    ||||| |||||||||||||||||||||||||||    
T  31197758 gattagtcgattcttggatcggatatcgagttt 31197790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 31712939 - 31712903
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  31712939 ctcggattagtcgattcttggatcggataccgagttt 31712903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 40542947 - 40542911
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  40542947 ctcggattagtcgattcttggatcggataccgagttt 40542911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 9690683 - 9690639
Alignment:
Q  256 ttggtcttctcggattaatcgattcttggatcggatatcgagttt 300  Q
    |||||| |||||||||| ||||||||||||||||||| |||||||    
T  9690683 ttggtcctctcggattagtcgattcttggatcggataccgagttt 9690639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 300
Target Start/End: Original strand, 9844099 - 9844134
Alignment:
Q  265 tcggattaatcgattcttggatcggatatcgagttt 300  Q
    |||||||| |||||||||||||||||||||||||||    
T  9844099 tcggattagtcgattcttggatcggatatcgagttt 9844134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 3222673 - 3222637
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  3222673 ctcggattagtcgattcttggatcggataccgagttt 3222637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 9239135 - 9239171
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  9239135 ctcggattagtcgattcttggatcggataccgagttt 9239171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 11449031 - 11449067
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  11449031 ctcggattagtcgattcttgaatcggatatcgagttt 11449067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 14213042 - 14213078
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  14213042 ctcggattagtcgattcttggatcggataccgagttt 14213078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 15360135 - 15360099
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  15360135 ctcggattagtcgattcttggatcggataccgagttt 15360099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 15730532 - 15730496
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  15730532 ctcggattagtcgattctttgatcggatatcgagttt 15730496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 21982358 - 21982322
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  21982358 ctcggattagtcgattcttggatcggataccgagttt 21982322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 34147506 - 34147542
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  34147506 ctcggattagtcgattcttggatcggataccgagttt 34147542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 34160122 - 34160158
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  34160122 ctcggattagtcgattcttggatcggataccgagttt 34160158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 38631016 - 38630980
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||||||||||||||||||||||| |||||||    
T  38631016 ctcggattaatcgattcttggatcggataccgagttt 38630980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 6014317 - 6014281
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    |||| |||| |||||||||||||||||||||||||||    
T  6014317 ctcgaattagtcgattcttggatcggatatcgagttt 6014281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 8484698 - 8484662
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  8484698 ctcggattagtcgattcttggatcggataccgagttt 8484662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 10631326 - 10631290
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  10631326 ctcggattagtcgattcttggatcggataccgagttt 10631290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 11926538 - 11926502
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  11926538 ctcggattagtcgattcttggatcggataccgagttt 11926502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 13659282 - 13659254
Alignment:
Q  264 ctcggattaatcgattcttggatcggata 292  Q
    |||||||||||||||||||||||||||||    
T  13659282 ctcggattaatcgattcttggatcggata 13659254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 18207367 - 18207403
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  18207367 ctcggattagtcgattcttggatcggataccgagttt 18207403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 19456248 - 19456212
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  19456248 ctcggattagtcgattcttggatcggataccgagttt 19456212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 22693095 - 22693131
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  22693095 ctcggattagtcgattcttggatcggataccgagttt 22693131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 27498768 - 27498732
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  27498768 ctcggattagtcgattcttggatcggataccgagttt 27498732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 34310302 - 34310338
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    |||| |||||||||||||||||||||||| |||||||    
T  34310302 ctcgaattaatcgattcttggatcggataccgagttt 34310338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 35425165 - 35425201
Alignment:
Q  256 ttggtcttctcggattaatcgattcttggatcggata 292  Q
    |||||| |||||||||| |||||||||||||||||||    
T  35425165 ttggtcctctcggattagtcgattcttggatcggata 35425201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 37495214 - 37495250
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  37495214 ctcggattagtcgattcttggatcggataccgagttt 37495250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 41351141 - 41351105
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  41351141 ctcggattagtcgattcttggatcggataccgagttt 41351105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 33696324 - 33696280
Alignment:
Q  256 ttggtcttctcggattaatcgattcttggatcggatatcgagttt 300  Q
    |||||| |||||||||| || ||||||||||||||||||||||||    
T  33696324 ttggtcctctcggattagtcaattcttggatcggatatcgagttt 33696280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 34723951 - 34723995
Alignment:
Q  256 ttggtcttctcggattaatcgattcttggatcggatatcgagttt 300  Q
    |||||| |||||||||| ||||||||||||||||||| |||||||    
T  34723951 ttggtcctctcggattagtcgattcttggatcggataccgagttt 34723995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 300
Target Start/End: Original strand, 51595183 - 51595218
Alignment:
Q  265 tcggattaatcgattcttggatcggatatcgagttt 300  Q
    |||||||||||||||||||||||||||| |||||||    
T  51595183 tcggattaatcgattcttggatcggataccgagttt 51595218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 5609239 - 5609203
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  5609239 ctcggattagtcgattcttggatcggataccgagttt 5609203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 19660569 - 19660533
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  19660569 ctcggattagtcgattcttggatcggataccgagttt 19660533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 20566514 - 20566546
Alignment:
Q  268 gattaatcgattcttggatcggatatcgagttt 300  Q
    ||||| |||||||||||||||||||||||||||    
T  20566514 gattagtcgattcttggatcggatatcgagttt 20566546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 23639784 - 23639820
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  23639784 ctcggattagtcgattcttggatcggataccgagttt 23639820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 23645442 - 23645478
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  23645442 ctcggattagtcgattcttggatcggataccgagttt 23645478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 27528832 - 27528796
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  27528832 ctcggattagtcgattcttggatcggataccgagttt 27528796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 34844795 - 34844759
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  34844795 ctcggattagtcgattcttggatcggataccgagttt 34844759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 40058889 - 40058853
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  40058889 ctcggattagtcgattcttggatcggataccgagttt 40058853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 43719132 - 43719096
Alignment:
Q  256 ttggtcttctcggattaatcgattcttggatcggata 292  Q
    |||||| |||||||||| |||||||||||||||||||    
T  43719132 ttggtcatctcggattagtcgattcttggatcggata 43719096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 52983779 - 52983815
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  52983779 ctcggattagtcgattcttggatcggataccgagttt 52983815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 21363103 - 21363139
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||||||||||||||||||||||| |||||||    
T  21363103 ctcggattaatcgattcttggatcggataccgagttt 21363139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 3747741 - 3747777
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  3747741 ctcggattagtcgattcttggatcggataccgagttt 3747777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 7485568 - 7485532
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  7485568 ctcggattagtcgattcttggatcggataccgagttt 7485532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 8097316 - 8097280
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  8097316 ctcggattagtcgattcttggatcggataccgagttt 8097280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 10083856 - 10083820
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  10083856 ctcggattagtcgattcttggatcggataccgagttt 10083820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 10190779 - 10190743
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  10190779 ctcggattagtcgattcttggatcggataccgagttt 10190743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 24165752 - 24165716
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  24165752 ctcggattagtcgattcttggatcggataccgagttt 24165716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 24407421 - 24407457
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  24407421 ctcggattagtcgattcttggatcggataccgagttt 24407457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 26174273 - 26174309
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  26174273 ctcggattagtcgattcttggatcggataccgagttt 26174309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 30807190 - 30807154
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  30807190 ctcggattagtcgattcttggatcggataccgagttt 30807154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 39041889 - 39041853
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  39041889 ctcggattagtcgattcttggatcggataccgagttt 39041853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 49258299 - 49258263
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  49258299 ctcggattagtcgattcttggatcggataccgagttt 49258263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 52821673 - 52821637
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  52821673 ctcggattagtcgattcttggatcggataccgagttt 52821637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 53424214 - 53424178
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  53424214 ctcggattagtcgattcttggatcggataccgagttt 53424178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 53848471 - 53848435
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  53848471 ctcggattagtcgattcttggatcggataccgagttt 53848435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 45132439 - 45132475
Alignment:
Q  256 ttggtcttctcggattaatcgattcttggatcggata 292  Q
    |||||| ||||||||||||||||||||||||||||||    
T  45132439 ttggtcctctcggattaatcgattcttggatcggata 45132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 11941247 - 11941211
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  11941247 ctcggattagtcgattcttggatcggataccgagttt 11941211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 25293319 - 25293355
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  25293319 ctcggattagtcgattcttggatcggataccgagttt 25293355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 27290734 - 27290770
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  27290734 ctcggattagtcgattcttggatcggataccgagttt 27290770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 29361708 - 29361744
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  29361708 ctcggattaattgattcctggatcggatatcgagttt 29361744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 36242349 - 36242321
Alignment:
Q  264 ctcggattaatcgattcttggatcggata 292  Q
    |||||||||||||||||||||||||||||    
T  36242349 ctcggattaatcgattcttggatcggata 36242321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 44946090 - 44946054
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  44946090 ctcggattagtcgattcttggatcggataccgagttt 44946054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 9500400 - 9500356
Alignment:
Q  256 ttggtcttctcggattaatcgattcttggatcggatatcgagttt 300  Q
    |||||||  |||||||| |||||||||||||||||||||||||||    
T  9500400 ttggtctcttcggattagtcgattcttggatcggatatcgagttt 9500356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 300
Target Start/End: Original strand, 48699920 - 48699955
Alignment:
Q  265 tcggattaatcgattcttggatcggatatcgagttt 300  Q
    |||||||| |||||||||||||||||||||||||||    
T  48699920 tcggattagtcgattcttggatcggatatcgagttt 48699955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 4621274 - 4621238
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  4621274 ctcggattagtcgattcttggatcggataccgagttt 4621238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 7766764 - 7766728
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  7766764 ctcggattagtcgattcttgaatcggatatcgagttt 7766728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 14603956 - 14603992
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  14603956 ctcggattagtcgattcttggatcggataccgagttt 14603992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 17935929 - 17935965
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  17935929 ctcggattagtcgattcttggatcggataccgagttt 17935965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 24122183 - 24122219
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  24122183 ctcggattagtcgattcttggatcggataccgagttt 24122219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 50202706 - 50202741
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||||||||||||| |||||||||||||||||    
T  50202706 ctcggattaatcgattctt-gatcggatatcgagttt 50202741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 5119 - 5083
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  5119 ctcggattagtcgattcttggatcggataccgagttt 5083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 40484 - 40520
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  40484 ctcggattagtcgattcttggatcggataccgagttt 40520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 2639448 - 2639412
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  2639448 ctcggattagtcgattcttggatcggataccgagttt 2639412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 3734660 - 3734624
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  3734660 ctcggattagtcgattcttggatcggataccgagttt 3734624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 4718809 - 4718845
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  4718809 ctcggattagtcgattcttggatcggataccgagttt 4718845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 8765563 - 8765527
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  8765563 ctcggattagtcgattcttggatcggataccgagttt 8765527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 9713618 - 9713654
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  9713618 ctcggattagtcgattcttggatcggataccgagttt 9713654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 21603394 - 21603430
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  21603394 ctcggattagtcgattcttggatcggataccgagttt 21603430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 28193638 - 28193674
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  28193638 ctcggattagtcgattcttggatcggataccgagttt 28193674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 34237692 - 34237656
Alignment:
Q  264 ctcggattaatcgattcttggatcggatatcgagttt 300  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  34237692 ctcggattagtcgattcttggatcggataccgagttt 34237656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University