View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_16 (Length: 361)
Name: NF12671_low_16
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 52001866 - 52001519
Alignment:
| Q |
1 |
acgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgtcacgcattcatagtgtttcagagaataaagaaaaaga |
100 |
Q |
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| T |
52001866 |
acgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgtcacgcattcatagtgtttcagagaataaagaaaaaga |
52001767 |
T |
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| Q |
101 |
tgatgatgtggaacatgaaattgatgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagg |
200 |
Q |
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| T |
52001766 |
tgatgatgtggaacatgaagttgatgatgat---tctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagg |
52001670 |
T |
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| Q |
201 |
gggtttgttgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctctta |
300 |
Q |
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| T |
52001669 |
gggtttgtcgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctctta |
52001570 |
T |
|
| Q |
301 |
aaattcttgccaatcatgttgatggacttgcttcgcttgatggtgtctctg |
351 |
Q |
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| T |
52001569 |
aaattcttgccaatcatgttgatggacttgcttcgcttgatggtgtttctg |
52001519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 99 - 346
Target Start/End: Complemental strand, 52011639 - 52011389
Alignment:
| Q |
99 |
gatgatgatgtggaacatgaaattgatgatgatgat---tctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaaca |
195 |
Q |
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| T |
52011639 |
gatgatgatgtggaacatgaagttgatgttgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaaga |
52011540 |
T |
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| Q |
196 |
aaagggggtttgttgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtc |
295 |
Q |
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| T |
52011539 |
aaaaaggggttgttaaggaatcctttatttgggttccgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtc |
52011440 |
T |
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| Q |
296 |
tcttaaaattcttgccaatcatgttgatggacttgcttcgcttgatggtgt |
346 |
Q |
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| T |
52011439 |
tcttaaaattcttgctaaccatgctgatggaatggtttcgcttgatggtgt |
52011389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 351
Target Start/End: Original strand, 51987866 - 51988114
Alignment:
| Q |
100 |
atgatgatgtggaacatgaaattgatgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaag |
199 |
Q |
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| T |
51987866 |
atgatgatatggaacatgaaactgatgatggt---tctccaacacctttctctaaagcaattaaagctattcaagaaagaatcgccaaaagcatgaaaaa |
51987962 |
T |
|
| Q |
200 |
ggggtttgttgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctctt |
299 |
Q |
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||| ||||||||||||| |||| |||| ||||||| | |||| |||||||| | | | |||| || ||||||||||| ||| |||| ||| ||| |
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| T |
51987963 |
agggcttgttgatgaatctcttatttggcattcaaaattcaatgaagaagatttggaaaagagaagctttagtgttccttcattgcaagaattgtgcctt |
51988062 |
T |
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| Q |
300 |
aaaattcttgccaatcatgttgatggacttgcttcgcttgatggtgtctctg |
351 |
Q |
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| T |
51988063 |
aacattcttgcgaaccatgctgatgccattgcttcgcttgatagtgtttctg |
51988114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 125 - 344
Target Start/End: Complemental strand, 11749419 - 11749200
Alignment:
| Q |
125 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgttgatgaatcccttact |
224 |
Q |
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|||||||| |||||||||||||||||| || || ||||||||||||||||||||||| | |||| ||| |||| ||||||||||||||||||||||| | |
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| T |
11749419 |
tgatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaatggggtttgttgatgaatcccttatt |
11749320 |
T |
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| Q |
225 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
324 |
Q |
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| T |
11749319 |
tgggttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaagcccttgctaatcatgttgatg |
11749220 |
T |
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| Q |
325 |
gacttgcttcgcttgatggt |
344 |
Q |
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| T |
11749219 |
gattggtttcccttgatggt |
11749200 |
T |
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