View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_18 (Length: 351)
Name: NF12671_low_18
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 10141754 - 10142090
Alignment:
| Q |
1 |
atagggaagatggaatacaagtaacatcttacaagcattgtttggtttaaaacaaaaggacaaagttcaagtactgtccaagtttgacacaa--ctttat |
98 |
Q |
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| T |
10141754 |
atagggaagatggaatacaagtaacatcttacaagcattgtttggtttaaaacaaaaggacaaagttcaagtactgtccaagtttgacacacagctttat |
10141853 |
T |
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| Q |
99 |
tcttattcatacatttgttttgtttcatttacaaatcacaagcaaccagaatcagaatcaggtgcatgattcttaacccttttaattaagtcaagaacct |
198 |
Q |
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| T |
10141854 |
tcttattcatacatttgttttgtgtcatttacaaatcacaagcaaccagaatcagaatcaggtgcatgattcttaacccttttaattaagtcaagaacct |
10141953 |
T |
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| Q |
199 |
ttcgaacaagttcccaaagaagaagcttactctagcccatcctcgagacgtttctggtgctttggtgttggctggtaccttcttcacattgaccatcaca |
298 |
Q |
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| T |
10141954 |
ttcgaacaagttcccaaagaagaagcttactctagcccatcctcgagacgtttctggtgctttggtgttggctggtaccttcttcacattgaccatcaca |
10142053 |
T |
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| Q |
299 |
gtctggccgatttctttacgcagtgcttcaatgatgt |
335 |
Q |
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| T |
10142054 |
gtctggccgatttctttacgcagtgcttcaatgatgt |
10142090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 91
Target Start/End: Complemental strand, 10135316 - 10135288
Alignment:
| Q |
63 |
aagttcaagtactgtccaagtttgacaca |
91 |
Q |
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| T |
10135316 |
aagttcaagtactgtccaagtttgacaca |
10135288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 40685101 - 40685042
Alignment:
| Q |
184 |
ttaagtcaagaacctttcgaacaagttcccaaagaagaagcttactctagcccatcctcg |
243 |
Q |
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| T |
40685101 |
ttaagccaagaacctttccaacaagttaccaaagaagaagctagttttagcccatcctcg |
40685042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 40685017 - 40684961
Alignment:
| Q |
271 |
tggtaccttcttcacattgaccatcacagtctggccgatttctttacgcagtgcttc |
327 |
Q |
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| T |
40685017 |
tggtactttcttcacatctaccatcattgtcttgccgatttctttacgaagtgcttc |
40684961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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