View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_19 (Length: 350)
Name: NF12671_low_19
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 342
Target Start/End: Complemental strand, 5835627 - 5835277
Alignment:
| Q |
11 |
acatcaccaacatgaaagtaggaacgtgtgaagaaagaaaagacttgctcctaaagtttagaagtacttattgactatattaacatattgtaactgtatc |
110 |
Q |
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| T |
5835627 |
acatcaccaacatgaaagtaggaacgtgtgaagaaagaaaagacttgctcctaaagtttagaagtacttattgactatat-aacatattgtaactgtatc |
5835529 |
T |
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| Q |
111 |
tct--attctccgtgacctatatatagagttcacatatcactaacactttcattaattcttcatcatca------------------gtgatggcagaaa |
190 |
Q |
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| T |
5835528 |
tctctattctccgtgacctatatatagagttgacatatcactaacactttcattaattcttcatcatcatcatcatcatcatcatcagtgatggcagaaa |
5835429 |
T |
|
| Q |
191 |
accctaatgtacatgataattcttcatcatcacctacacaacaacatggaattagagataacaaaacaaaacaaaaagttccattctacatgcttttcaa |
290 |
Q |
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| T |
5835428 |
accctaatgtacatgataattcttcatcatcacctacacaacaacatggaattagagataacaaaacaaaacaaaaagttccattctacatgcttttcaa |
5835329 |
T |
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| Q |
291 |
ttttgctgatcatcttgatgtaacgttgatgatcattggcactatctctgct |
342 |
Q |
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| T |
5835328 |
ttttgctgatcatcttgatgtaacgttgatgatcattggcactatctctgct |
5835277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 5763325 - 5763422
Alignment:
| Q |
244 |
agagataacaaaacaaaacaaaaagttccattctacatgcttttcaattttgctgatcatcttgatgtaacgttgatgatcattggcactatctctgc |
341 |
Q |
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| T |
5763325 |
agagataacaaagccaaccagaaagtttcattccacaaactctttacttttgctgatagtcttgatgtaacattgatgatcattggcaccatctctgc |
5763422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 341
Target Start/End: Complemental strand, 29332842 - 29332750
Alignment:
| Q |
249 |
taacaaaacaaaacaaaaagttccattctacatgcttttcaattttgctgatcatcttgatgtaacgttgatgatcattggcactatctctgc |
341 |
Q |
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||||||| | || |||| |||||||||||||| ||| || | ||||||||||| |||||| ||||| |||||||||||||||||||| ||||| |
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| T |
29332842 |
taacaaagccaaccaaatagttccattctacaagctctttagttttgctgatcgtcttgacgtaactttgatgatcattggcactatttctgc |
29332750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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