View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12671_low_21 (Length: 342)

Name: NF12671_low_21
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12671_low_21
NF12671_low_21
[»] chr4 (9 HSPs)
chr4 (1-322)||(3557112-3557430)
chr4 (1-202)||(3565232-3565448)
chr4 (1-141)||(1686651-1686788)
chr4 (256-318)||(3565134-3565196)
chr4 (1-126)||(3561324-3561446)
chr4 (162-195)||(3561512-3561545)
chr4 (143-195)||(11849195-11849247)
chr4 (143-188)||(1686808-1686853)
chr4 (12-48)||(11971329-11971365)
[»] chr1 (4 HSPs)
chr1 (76-135)||(39379505-39379564)
chr1 (142-202)||(39379589-39379649)
chr1 (1-45)||(39379427-39379471)
chr1 (167-195)||(17561318-17561346)
[»] chr7 (4 HSPs)
chr7 (143-195)||(29074556-29074608)
chr7 (143-195)||(29106291-29106343)
chr7 (258-289)||(29858852-29858883)
chr7 (7-48)||(22080540-22080581)
[»] chr3 (2 HSPs)
chr3 (1-43)||(3625423-3625465)
chr3 (256-301)||(3625181-3625226)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 3557430 - 3557112
Alignment:
Q  1 actttcaatatttctccaaacattattacctaaactgaaaactcttacctcacttgtcaaaggattatcatcaatgtaacgtgacgcaaccactttaaaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |   ||||  |||||||||||| |||||||||||||||    
T  3557430 actttcaatatttctccaaacattatcacctaaactgaaaactctaacctcacttgtcaaacg---atcacgaatgtaacgtgatgcaaccactttaaaa 3557334  T
Q  101 gttccagtggaattatcacaaccaaaattgaagacgaaacc------------------accaatttttggagatatattcctagtggctgggttccata 182  Q
    ||  | || |||| |||||||||||||||||||||||||||                  |||||||||||||||||| ||||||||||||||||||||||    
T  3557333 gtgtcggtagaatcatcacaaccaaaattgaagacgaaaccaggaagatcacgaaaacaaccaatttttggagatattttcctagtggctgggttccata 3557234  T
Q  183 aacggagccagtagtcataattaaattcagcatcaacggaatgataaacggaaccagctaaagcggaacgtttaccagtcaaacaaatcaacccattgca 282  Q
    |||| ||||||||||||||    |||||| ||||| ||||   |||||                |||||| | |||||||||||||||||||||||||||    
T  3557233 aacgtagccagtagtcata---taattcatcatcatcggaccaataaa---------------tggaacgataaccagtcaaacaaatcaacccattgca 3557152  T
Q  283 ggaaccagctatacgagagcagtctttttcattcaataga 322  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  3557151 ggaacctgctataccagagcagtctttttcattcaataga 3557112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 3565448 - 3565232
Alignment:
Q  1 actttcaatatttctccaaacattattacctaaactgaaaactcttacctcacttgtcaaaggattatcatcaatgtaacgtgacgcaaccactttaaaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||| |||   ||| ||||||||||||||||||||||||||||    
T  3565448 actttcaatatttctccaaacattatcacctaaactgaaaactctcacctcgcttttcaaatgat---catgaatgtaacgtgacgcaaccactttaaaa 3565352  T
Q  101 gttccagtggaattatcacaaccaaaattgaagacg------------------aaaccaccaatttttggagatatattcctagtggctgggttccata 182  Q
    ||||| |||||||||||||||||| |||||||||||                  |||| |||||||||||||||||| |||||||| |||||||||||||    
T  3565351 gttccggtggaattatcacaaccacaattgaagacgaaactatgaagatcacgaaaacaaccaatttttggagatattttcctagtagctgggttccata 3565252  T
Q  183 aacggagccagtagtcataa 202  Q
    ||||||||||||| ||||||    
T  3565251 aacggagccagtactcataa 3565232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 1686651 - 1686788
Alignment:
Q  1 actttcaatatttctccaaacattattacctaaactgaaaactcttacctcacttgtcaaaggattatcatcaatgtaacgtgacgcaaccactttaaaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |  | || |||||||   | ||||  | | |||| |||||||||||||||||||    
T  1686651 actttcaatatttctccaaacattatcacctaaactgaaaactctcatataacatgtcaaa---taatcacgactttaacatgacgcaaccactttaaaa 1686747  T
Q  101 gttccagtggaattatcacaaccaaaattgaagacgaaacc 141  Q
    || ||||||||||||||||||||||||||||||| ||||||    
T  1686748 gtgccagtggaattatcacaaccaaaattgaagatgaaacc 1686788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 3565196 - 3565134
Alignment:
Q  256 accagtcaaacaaatcaacccattgcaggaaccagctatacgagagcagtctttttcattcaa 318  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  3565196 accagtcaaacagatcaacccattgcagaaaccagctataccagagcagtctttttcattcaa 3565134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 3561324 - 3561446
Alignment:
Q  1 actttcaatatttctccaaacattattacctaaactgaaaactcttacctcacttgtcaaaggattatcatcaatgtaacgtgacgcaaccactttaaaa 100  Q
    |||||||||||||||||||||||||| ||| |||| |||| |||| ||||| || |||||  |||   ||  |||||||| |||||||||||||||| ||    
T  3561324 actttcaatatttctccaaacattatcaccaaaaccgaaagctctcacctcgctagtcaattgat---cacgaatgtaacatgacgcaaccactttataa 3561420  T
Q  101 gttccagtggaattatcacaaccaaa 126  Q
     | ||||| |||||||||||||||||    
T  3561421 atgccagttgaattatcacaaccaaa 3561446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 3561512 - 3561545
Alignment:
Q  162 tcctagtggctgggttccataaacggagccagta 195  Q
    ||||||||||||||||||||||||||||||||||    
T  3561512 tcctagtggctgggttccataaacggagccagta 3561545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 11849195 - 11849247
Alignment:
Q  143 ccaatttttggagatatattcctagtggctgggttccataaacggagccagta 195  Q
    |||| |||||||||| |  |||| |||||||||||||||||||||||||||||    
T  11849195 ccaaattttggagatgttgtcctggtggctgggttccataaacggagccagta 11849247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 1686808 - 1686853
Alignment:
Q  143 ccaatttttggagatatattcctagtggctgggttccataaacgga 188  Q
    |||||| || ||||||| ||||||||||| ||||||||||||||||    
T  1686808 ccaattatttgagatattttcctagtggccgggttccataaacgga 1686853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 11971329 - 11971365
Alignment:
Q  12 ttctccaaacattattacctaaactgaaaactcttac 48  Q
    |||||||||||||||| |||| |||||||||||||||    
T  11971329 ttctccaaacattattgcctatactgaaaactcttac 11971365  T

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Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 39379505 - 39379564
Alignment:
Q  76 gtaacgtgacgcaaccactttaaaagttccagtggaattatcacaaccaaaattgaagac 135  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  39379505 gtaacgtgacgcaaccactttaaaagtttcagtggaattatcacaaccaaaatcgaagac 39379564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 39379589 - 39379649
Alignment:
Q  142 accaatttttggagatatattcctagtggctgggttccataaacggagccagtagtcataa 202  Q
    |||||||||| ||||| | |||||||||||||||||||||||||||| |||||| ||||||    
T  39379589 accaattttttgagatgttttcctagtggctgggttccataaacggaaccagtactcataa 39379649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39379427 - 39379471
Alignment:
Q  1 actttcaatatttctccaaacattattacctaaactgaaaactct 45  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  39379427 actttcaatatttctccaaacattatcacccaaactgaaaactct 39379471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 17561318 - 17561346
Alignment:
Q  167 gtggctgggttccataaacggagccagta 195  Q
    |||||||||||||||||||||||||||||    
T  17561318 gtggctgggttccataaacggagccagta 17561346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 29074608 - 29074556
Alignment:
Q  143 ccaatttttggagatatattcctagtggctgggttccataaacggagccagta 195  Q
    |||| |||||||||| |  |||| |||||||||||||||||||||||||||||    
T  29074608 ccaaattttggagatgttgtcctggtggctgggttccataaacggagccagta 29074556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 29106343 - 29106291
Alignment:
Q  143 ccaatttttggagatatattcctagtggctgggttccataaacggagccagta 195  Q
    |||| |||||||||| |  |||| |||||||||||||||||||||||||||||    
T  29106343 ccaaattttggagatgttgtcctggtggctgggttccataaacggagccagta 29106291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 289
Target Start/End: Complemental strand, 29858883 - 29858852
Alignment:
Q  258 cagtcaaacaaatcaacccattgcaggaacca 289  Q
    ||||||||||||||||||||||||||||||||    
T  29858883 cagtcaaacaaatcaacccattgcaggaacca 29858852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 22080581 - 22080540
Alignment:
Q  7 aatatttctccaaacattattacctaaactgaaaactcttac 48  Q
    ||||| |||||||||||| || ||||||||||||||||||||    
T  22080581 aatatctctccaaacattgttgcctaaactgaaaactcttac 22080540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3625465 - 3625423
Alignment:
Q  1 actttcaatatttctccaaacattattacctaaactgaaaact 43  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||    
T  3625465 actttcaatatttctccaaacattatcaccaaaactgagaact 3625423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 3625226 - 3625181
Alignment:
Q  256 accagtcaaacaaatcaacccattgcaggaaccagctatacgagag 301  Q
    ||||| |||||| ||||| ||||||||||||||| |||||||||||    
T  3625226 accagccaaacatatcaatccattgcaggaaccaactatacgagag 3625181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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