View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_25 (Length: 302)
Name: NF12671_low_25
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 21714959 - 21714684
Alignment:
| Q |
9 |
agcagagaggtcagggaatcaaaaaattttgctaaatgttgacaaacctctcaacaccttggcaggggacgatagtatgcaaaattattttgcggtatca |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21714959 |
agcaaagaggtcagggaatcaaaaaattttgctaaatgttgacaaacctctcaacaccttggcaggggacgatagtatgcaaaattattttgcggtatca |
21714860 |
T |
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| Q |
109 |
tcatggtggcacaatgaaattccaattattggttcattgcaggctgcaaaccttgaaatgttgttgctacacataaataccagtatatcacaaagttcct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21714859 |
tcatggtggcacaatgaaattccaattattggttcattgcaggctgcaaaccttgaaatgttgttgctacacataaataccagtatatcacaaagttcct |
21714760 |
T |
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| Q |
209 |
ttgttttatcaaatttaacatttgaaggaatagaagggctcaaggtattttctctaaccaatgattccaatagtga |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21714759 |
ttgttttatcaaatttaacatttgaaggaatagaagggctcaaggtattttctctaaccaatgattccaatagtga |
21714684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 21704557 - 21704824
Alignment:
| Q |
9 |
agcagagaggtcagggaatcaaaaaattttgctaaatgttgacaaacctctcaacaccttggcaggggacgatagtatgcaaaattattttgcggtatca |
108 |
Q |
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|||| ||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21704557 |
agcaaagaggtcagaggatcgcaaaattttggtaaatgttgacaaacctctcaacaccttggcaggggacgatagtatacaaaattattttgcggtatca |
21704656 |
T |
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| Q |
109 |
tcatggtggcacaatgaaattccaattattggttcattgcaggctgcaaaccttgaaatgttgttgctacacataaataccagtatatcacaaagttcct |
208 |
Q |
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||||||||| | ||||||| ||||||||||||| ||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21704657 |
tcatggtgggaaaatgaaaatccaattattggtccattgcaagctgcaaaagttcaaatgttgttgctacacataaataccagtatatcacaaagttcct |
21704756 |
T |
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| Q |
209 |
ttgttttatcaaatttaacatttgaaggaatagaagggctcaaggtattttctctaaccaatgattcc |
276 |
Q |
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|||| |||||||||||||||||||||||||| || || |||||||| |||||| |||||||||||||| |
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| T |
21704757 |
ttgtattatcaaatttaacatttgaaggaattgatggactcaaggttttttctttaaccaatgattcc |
21704824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 21123614 - 21123677
Alignment:
| Q |
204 |
ttcctttgttttatcaaatttaacatttgaaggaatagaagggctcaaggtattttctctaacc |
267 |
Q |
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|||||| | |||||| |||||||||||||||||||| ||||||| ||||||||||| ||||| |
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| T |
21123614 |
ttccttggatttatcgcatttaacatttgaaggaatacaagggcttgaggtattttctttaacc |
21123677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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