View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_30 (Length: 253)
Name: NF12671_low_30
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 1657110 - 1656899
Alignment:
| Q |
25 |
tatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataatgtttat-gttttca |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
1657110 |
tatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataatgttttttgttttca |
1657011 |
T |
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| Q |
124 |
gatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgcgcatgacaaatgaataagttattaag |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1657010 |
gatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgcgcatgacaaatgaataagttattaag |
1656911 |
T |
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| Q |
224 |
atattgattgtg |
235 |
Q |
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||||||||||| |
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| T |
1656910 |
ctattgattgtg |
1656899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 644705 - 644499
Alignment:
| Q |
21 |
tcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataatgtttatg-tt |
119 |
Q |
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| T |
644705 |
tcggtatcgtttt-aatctcaaagagcggagactcttatcacggcaaggatgtcttgtttgctatgaagtttgaattgtgaatttctaatgtttttggtt |
644607 |
T |
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| Q |
120 |
ttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgctcatcatgttatgtgcgcatgacaaatgaataagttat |
219 |
Q |
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| T |
644606 |
ttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgtatatatgctcatcatgttatgtgtgcatgacaaatgaataagttat |
644507 |
T |
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| Q |
220 |
taagatat |
227 |
Q |
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||| |||| |
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| T |
644506 |
taatatat |
644499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 31333325 - 31333481
Alignment:
| Q |
80 |
tgctatgaagtttgaattgtgaatttataatgtttat-gttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata |
178 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31333325 |
tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata |
31333424 |
T |
|
| Q |
179 |
tgctcatcatgttatgtgcgcatgacaaatgaataagttattaagatattgattgtg |
235 |
Q |
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| T |
31333425 |
tgctcatcatgttatgtgagcatgacaaatgaataagttattaagctattgattgtg |
31333481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 31340055 - 31340211
Alignment:
| Q |
80 |
tgctatgaagtttgaattgtgaatttataatgtttat-gttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata |
178 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31340055 |
tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata |
31340154 |
T |
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| Q |
179 |
tgctcatcatgttatgtgcgcatgacaaatgaataagttattaagatattgattgtg |
235 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
31340155 |
tgctcatcatgttatgtgtgcatgacaaatgaataagttattaagctattgattgtg |
31340211 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 28246529 - 28246654
Alignment:
| Q |
21 |
tcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataatg-tttatgtt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
28246529 |
tcggtatcgtttttaatctcaaagagcggagactcttatcacatcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataatgttttttgtt |
28246628 |
T |
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| Q |
120 |
ttcagatttacttctatgagaaatta |
145 |
Q |
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|||||||||||||||||||||||||| |
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| T |
28246629 |
ttcagatttacttctatgagaaatta |
28246654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 11936511 - 11936599
Alignment:
| Q |
21 |
tcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11936511 |
tcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataa |
11936599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 11948491 - 11948579
Alignment:
| Q |
21 |
tcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11948491 |
tcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtgaatttataa |
11948579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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