View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_31 (Length: 251)
Name: NF12671_low_31
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 19900984 - 19901213
Alignment:
| Q |
12 |
atggacatcatttcttatggagttttttatgtcnnnnnnntaatcaagtggagttaggattggtatggaagnnnnnnngagaattgaaatggtagtgttc |
111 |
Q |
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| T |
19900984 |
atggacatagtttcttatggagttctttatgtcaaaaaaataatcaagtggagttaggtttggtatggaagaaaaaaagagaattgaaatggtagtactc |
19901083 |
T |
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| Q |
112 |
atatgtgcttaacaattaaacatacacttggagactgctacatatgtgcttaacaattagcatcagtgtagaacctccataataataacattagtgtata |
211 |
Q |
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| T |
19901084 |
atatgtgcttaacaattaaacatatacttgcagcctgctacatatgtgcttaacaattaacatgagtgcagaacctccatagtaataacatcagtgtata |
19901183 |
T |
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| Q |
212 |
actagttcccaacaactagcatcagtgaac |
241 |
Q |
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| T |
19901184 |
actagtttccaacaactagcatcagtgaac |
19901213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 19901262 - 19901343
Alignment:
| Q |
160 |
cttaacaattagcatcagtgtagaacctccataataataacattagtgtataactagttcccaacaactagcatcagtgaac |
241 |
Q |
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| T |
19901262 |
cttaacaattagcatcagtgcagaacctccataaaaatagcatcagtgtataactagttcccaacaactagcatcagtgaac |
19901343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 3582344 - 3582290
Alignment:
| Q |
153 |
atatgtgcttaacaattagcatcagtgtagaacctccataataataacattagtg |
207 |
Q |
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| T |
3582344 |
atatgtgcttaacaattagcatcagtatataacctccataaaaatagcatcagtg |
3582290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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