View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12671_low_35 (Length: 236)

Name: NF12671_low_35
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12671_low_35
NF12671_low_35
[»] chr7 (26 HSPs)
chr7 (51-222)||(21873762-21873933)
chr7 (50-222)||(7791526-7791698)
chr7 (50-222)||(47065152-47065324)
chr7 (50-222)||(32541397-32541568)
chr7 (50-222)||(42094766-42094938)
chr7 (109-222)||(10533288-10533401)
chr7 (78-222)||(34592355-34592500)
chr7 (109-222)||(46321383-46321496)
chr7 (78-222)||(46924550-46924694)
chr7 (79-222)||(8214958-8215101)
chr7 (50-222)||(32661585-32661757)
chr7 (50-222)||(40704723-40704895)
chr7 (78-222)||(40995835-40995978)
chr7 (116-220)||(7901115-7901219)
chr7 (50-222)||(39073656-39073828)
chr7 (143-222)||(40994209-40994288)
chr7 (143-222)||(43246336-43246415)
chr7 (50-222)||(19699668-19699839)
chr7 (143-222)||(38875455-38875534)
chr7 (50-222)||(35924777-35924949)
chr7 (109-222)||(26015161-26015274)
chr7 (50-222)||(27325512-27325683)
chr7 (50-222)||(38282931-38283104)
chr7 (50-222)||(21278268-21278441)
chr7 (50-193)||(25877481-25877624)
chr7 (78-194)||(47778798-47778914)
[»] chr8 (26 HSPs)
chr8 (50-222)||(11588748-11588920)
chr8 (50-222)||(34918084-34918256)
chr8 (50-222)||(37578871-37579043)
chr8 (50-222)||(43663605-43663777)
chr8 (78-222)||(24822016-24822160)
chr8 (78-222)||(39365930-39366074)
chr8 (50-222)||(15840441-15840613)
chr8 (50-222)||(17602294-17602467)
chr8 (50-222)||(26290033-26290205)
chr8 (50-222)||(26303290-26303462)
chr8 (50-222)||(26315284-26315456)
chr8 (142-222)||(16633891-16633971)
chr8 (143-222)||(5599240-5599319)
chr8 (143-222)||(5635956-5636035)
chr8 (143-222)||(26121958-26122037)
chr8 (50-222)||(3032198-3032370)
chr8 (116-222)||(8376867-8376973)
chr8 (115-220)||(34564383-34564488)
chr8 (109-222)||(35605987-35606100)
chr8 (143-222)||(42512831-42512910)
chr8 (109-208)||(23356615-23356714)
chr8 (78-222)||(3136525-3136670)
chr8 (50-187)||(26294413-26294550)
chr8 (50-187)||(26307670-26307807)
chr8 (50-193)||(12713392-12713535)
chr8 (143-222)||(5988797-5988877)
[»] chr5 (17 HSPs)
chr5 (50-222)||(6468969-6469141)
chr5 (79-222)||(25085649-25085792)
chr5 (109-222)||(25143621-25143734)
chr5 (78-222)||(33281499-33281643)
chr5 (78-222)||(31510738-31510881)
chr5 (50-222)||(37866522-37866694)
chr5 (50-222)||(38759660-38759832)
chr5 (79-222)||(43292978-43293121)
chr5 (109-222)||(4155469-4155582)
chr5 (51-222)||(9066330-9066500)
chr5 (109-222)||(29921089-29921202)
chr5 (144-222)||(13145250-13145328)
chr5 (109-222)||(19034040-19034159)
chr5 (50-222)||(19616878-19617041)
chr5 (78-194)||(43517586-43517702)
chr5 (79-182)||(24559771-24559874)
chr5 (143-182)||(24600804-24600843)
[»] chr2 (20 HSPs)
chr2 (50-222)||(35896402-35896574)
chr2 (78-222)||(37094710-37094854)
chr2 (50-222)||(25852653-25852825)
chr2 (78-222)||(32550906-32551050)
chr2 (50-222)||(42343608-42343778)
chr2 (50-222)||(2389935-2390106)
chr2 (50-222)||(21658567-21658738)
chr2 (109-222)||(43577579-43577692)
chr2 (50-222)||(927645-927816)
chr2 (109-222)||(3178887-3179000)
chr2 (109-222)||(13195513-13195626)
chr2 (78-222)||(1520865-1521009)
chr2 (50-222)||(39697079-39697251)
chr2 (109-222)||(40811048-40811161)
chr2 (109-222)||(44144056-44144169)
chr2 (143-222)||(1482513-1482592)
chr2 (143-222)||(34202951-34203030)
chr2 (157-222)||(27980312-27980377)
chr2 (157-222)||(28066842-28066907)
chr2 (109-222)||(10639383-10639496)
[»] chr1 (26 HSPs)
chr1 (50-222)||(2481926-2482098)
chr1 (78-222)||(44722552-44722696)
chr1 (50-222)||(34270037-34270209)
chr1 (50-222)||(34276272-34276444)
chr1 (51-222)||(40535923-40536094)
chr1 (78-222)||(2137663-2137807)
chr1 (78-222)||(11172647-11172791)
chr1 (50-215)||(15941497-15941662)
chr1 (50-222)||(24317826-24317997)
chr1 (50-222)||(39568652-39568823)
chr1 (109-222)||(39983017-39983130)
chr1 (50-222)||(28852103-28852275)
chr1 (78-222)||(52043698-52043841)
chr1 (50-225)||(20582240-20582414)
chr1 (142-222)||(50728502-50728582)
chr1 (143-222)||(26163888-26163967)
chr1 (78-218)||(33010010-33010150)
chr1 (78-222)||(49823846-49823990)
chr1 (50-222)||(6653756-6653927)
chr1 (50-222)||(42948837-42949009)
chr1 (116-222)||(51676555-51676660)
chr1 (109-222)||(14246574-14246687)
chr1 (109-222)||(52025297-52025410)
chr1 (143-222)||(18909821-18909900)
chr1 (50-222)||(40400671-40400844)
chr1 (50-185)||(13234595-13234730)
[»] chr6 (10 HSPs)
chr6 (50-222)||(7141860-7142032)
chr6 (50-222)||(18894391-18894563)
chr6 (50-222)||(25332153-25332325)
chr6 (78-222)||(6625980-6626124)
chr6 (50-222)||(6167252-6167423)
chr6 (79-222)||(13889339-13889482)
chr6 (109-215)||(29121690-29121796)
chr6 (78-187)||(25331634-25331743)
chr6 (143-222)||(3095193-3095273)
chr6 (143-222)||(29629858-29629938)
[»] chr4 (25 HSPs)
chr4 (50-222)||(19873356-19873528)
chr4 (50-222)||(20434759-20434931)
chr4 (50-222)||(28405715-28405887)
chr4 (50-222)||(43829524-43829695)
chr4 (78-222)||(42349347-42349491)
chr4 (50-222)||(42723410-42723582)
chr4 (50-222)||(52912429-52912601)
chr4 (50-222)||(55214872-55215044)
chr4 (50-222)||(55220514-55220686)
chr4 (50-222)||(56363350-56363522)
chr4 (50-222)||(20738394-20738565)
chr4 (50-222)||(56017717-56017889)
chr4 (117-222)||(38291228-38291333)
chr4 (143-222)||(23894557-23894636)
chr4 (78-222)||(46563781-46563924)
chr4 (50-222)||(37233441-37233614)
chr4 (143-222)||(39539829-39539908)
chr4 (50-222)||(55182796-55182968)
chr4 (109-222)||(614474-614590)
chr4 (116-222)||(53874379-53874485)
chr4 (109-222)||(52839050-52839163)
chr4 (50-222)||(1356321-1356494)
chr4 (50-222)||(10541383-10541557)
chr4 (50-181)||(5098717-5098848)
chr4 (179-222)||(25858309-25858352)
[»] chr3 (22 HSPs)
chr3 (50-222)||(22781077-22781249)
chr3 (50-222)||(33967566-33967738)
chr3 (50-222)||(37970941-37971113)
chr3 (50-218)||(10840662-10840830)
chr3 (50-218)||(41070535-41070703)
chr3 (78-222)||(25711575-25711719)
chr3 (78-222)||(38871772-38871916)
chr3 (50-222)||(32236947-32237119)
chr3 (78-222)||(33711980-33712123)
chr3 (50-218)||(36430967-36431135)
chr3 (116-222)||(20834845-20834951)
chr3 (143-222)||(4515366-4515445)
chr3 (50-222)||(4044045-4044217)
chr3 (79-222)||(24395846-24395989)
chr3 (50-222)||(20656522-20656694)
chr3 (50-185)||(7149235-7149370)
chr3 (78-222)||(20048955-20049100)
chr3 (143-222)||(40585484-40585564)
chr3 (50-222)||(672720-672883)
chr3 (109-222)||(10999078-10999192)
chr3 (109-222)||(53974929-53975032)
chr3 (143-182)||(6267664-6267703)
[»] scaffold0062 (1 HSPs)
scaffold0062 (50-222)||(41174-41346)
[»] scaffold0438 (1 HSPs)
scaffold0438 (50-222)||(1370-1542)
[»] scaffold0391 (1 HSPs)
scaffold0391 (143-222)||(4659-4738)
[»] scaffold0368 (1 HSPs)
scaffold0368 (50-222)||(14510-14682)
[»] scaffold0007 (1 HSPs)
scaffold0007 (143-222)||(156453-156522)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 21873762 - 21873933
Alignment:
Q  51 ttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaacc 150  Q
    ||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||||||    
T  21873762 ttttctatttacaccccatgtttttctggttacacccaaattttcttaaaacttttttataataccaaaattgcccttttatataaattttcttaaaacc 21873861  T
Q  151 ctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  21873862 ctaattttattcattgtcggtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 21873933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 7791698 - 7791526
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||    
T  7791698 tttttctatttacaccccatgattttctggttacacccaaattttcttaaaagttttttataatatcaaaattgcccttttatataaattttcttaaaac 7791599  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  7791598 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 7791526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 47065152 - 47065324
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||| ||        ||||| ||||||||||||||||||||        |||||||    
T  47065152 tttttctatttacaccccatgtttttctggttacacccaaattttctttaaaaaaaattataataccaaaattgcccttttatataaattttcttaaaac 47065251  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  47065252 cctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgattgatcaaacaatttgatgt 47065324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 32541397 - 32541568
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  32541397 tttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataataccaaaattgcccttttatataaattttcttaaaac 32541495  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  32541496 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 32541568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 42094766 - 42094938
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       | ||||||||||||||| |||||        ||||| ||||||||||||||||||||        |||||||    
T  42094766 tttttctatttacaccccatgtttttctgattacacccaaatttttttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 42094865  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  42094866 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 42094938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 10533401 - 10533288
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  10533401 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 10533302  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  10533301 aaacaatttgatgt 10533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 34592500 - 34592355
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttt-aaaaccctaattttattcattgtcggtgagtt 176  Q
    ||||||||||||||||||||||         ||||| ||||||||||||||||||||       ||| |||||||||||||||||||||||| |||||||    
T  34592500 ggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataatttttttttaaaaccctaattttattcattgtcagtgagtt 34592401  T
Q  177 tcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||    
T  34592400 tcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 34592355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 46321383 - 46321496
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  46321383 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 46321482  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  46321483 aaacaatttgatgt 46321496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 46924694 - 46924550
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    ||||| |||||||||||||||||        ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  46924694 ggttatacccaaattttcttaaattatctttataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 46924595  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||| |||| ||||||||||||||||||||||    
T  46924594 caccctctttcaccccacaaagtgatcgatcaaacaatttgatgt 46924550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 8214958 - 8215101
Alignment:
Q  79 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 178  Q
    ||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||| ||||||||| ||||||| |||||||||    
T  8214958 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaaccttaattttatacattgtcagtgagtttc 8215057  T
Q  179 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||| |||||| |||||||||||||||||||||||||||    
T  8215058 accctctttcaccccacaaagcgatcgatcaaacaatttgatgt 8215101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 32661585 - 32661757
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| |||||||||||||| |||||        ||||||     
T  32661585 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatttataataccaaaattgcccttctatataaattttcttaaaag 32661684  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  32661685 cctaattttgttcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 32661757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 40704723 - 40704895
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  40704723 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatt-ataataccaaaattgcccttttatataaattttcttaaaac 40704821  T
Q  150 cctaattttattcattgtcggtgagtttcaccctctttta-ccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  40704822 cctaattttattcattgtcagtgagtttcaccctctttcacccccacaaagcgatcgatcaaacaatttgatgt 40704895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 40995978 - 40995835
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||| ||||||||    
T  40995978 ggttacacccaaattttcttaaaaaaaatt-ataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 40995880  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  40995879 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 40995835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 7901219 - 7901115
Alignment:
Q  116 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 215  Q
    |||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  7901219 caaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaat 7901120  T
Q  216 ttgat 220  Q
    |||||    
T  7901119 ttgat 7901115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 39073656 - 39073828
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  39073656 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 39073755  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccc-cataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||  ||||||||||||||||| |||| || |||||||||||||||||||||||||||    
T  39073756 cctaattttattcattgtca-tgagtttcaccctctttcaccctcacaaagcgatcgatcaaacaatttgatgt 39073828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 40994209 - 40994288
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  40994209 ttaaaaccctaattttattcattgtcggtgagtttcaccctctttcaccccacaaagcgaacgatcaaacaatttgatgt 40994288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 43246336 - 43246415
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  43246336 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 43246415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 19699839 - 19699668
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  19699839 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaaattataataccaaaattgcccttttatataaattttcttaaaac 19699740  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||| ||||| || ||||||||||||||||||    
T  19699739 cctaattttattcattgtcagtgagtttca-cctctttcaccccacaaagctattgatcaaacaatttgatgt 19699668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 38875455 - 38875534
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  38875455 ttaaaaccctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 38875534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 35924949 - 35924777
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||    
T  35924949 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataatatcaaaattgcccttttatataaattttcttaaaac 35924850  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||| ||||| |||||| ||| |||||||| ||| ||||||||||    
T  35924849 cctaattttattcattgtcagtgagtttcaccatctttcaccccacaaaacgatcgataaaaaaatttgatgt 35924777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 26015161 - 26015274
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| |||||||| |||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||| |||    
T  26015161 ataataccaaaattacccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcactccacaaagcgatcaatc 26015260  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  26015261 aaacaatttgatgt 26015274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 27325683 - 27325512
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||| ||||||||||        |||||||    
T  27325683 tttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataataccaaaattgtccttttatataaattttcttaaaac 27325585  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    | ||||||||||||||||| |||||||||||||||||| |||||| |||| |||||||||||||||| |||||    
T  27325584 cataattttattcattgtcagtgagtttcaccctctttcaccccacaaagtgatcgatcaaacaattcgatgt 27325512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 38282931 - 38283104
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  38282931 tttttctatttacaccccatgtttgtctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 38283030  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  38283031 cctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 38283104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 21278268 - 21278441
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||| |||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  21278268 tttttctatttacaccccatgtttttctggttacacctaaattttcttaaaatttttttataataccaaaattgcccttttatataaattttcttaaaac 21278367  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  21278368 cctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 21278441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 25877624 - 25877481
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||||||||       |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||    
T  25877624 tttttctatttacacctcatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgtccttttatataaattttcttaaaac 25877525  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttacccc 193  Q
    |||||||||||||||||||  ||||||||||||||||| |||||    
T  25877524 cctaattttattcattgtcactgagtttcaccctctttcacccc 25877481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 47778798 - 47778914
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| |||||||||  |||||||||        ||||||||||||||||||||||||||  |||||||    
T  47778798 ggttacacccaaattttcttaaaagttttttataataccaaaattgtacttttatataaattttcttaaaaccctaattttattcattgtcactgagttt 47778897  T
Q  178 caccctcttttacccca 194  Q
    |||||||||| ||||||    
T  47778898 caccctctttcacccca 47778914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 11588920 - 11588748
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  11588920 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 11588821  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  11588820 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 11588748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 34918256 - 34918084
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||    
T  34918256 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaatttttttataataccaaaattgtccttttatataaattttcttaaaac 34918157  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  34918156 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 34918084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 37579043 - 37578871
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  37579043 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 37578944  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
     |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  37578943 tctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 37578871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 43663605 - 43663777
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  ||||||||| |||||||||        |||||||    
T  43663605 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaatttttttataatatcaaaattgctcttttatataaattttcttaaaac 43663704  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  43663705 cctaattttattcattgtcggtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 43663777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 24822016 - 24822160
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  24822016 ggttacacccaaattttcttaaaaaaaatttataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcggtgagttt 24822115  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||    
T  24822116 caccctctttcgccccacaaagcgatcgatcaaacaatttgatgt 24822160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 39366074 - 39365930
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| | ||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  39366074 ggttacacccaaattttcttaaaatttttttataatactaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 39365975  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  39365974 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 39365930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 15840613 - 15840441
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||  ||||||||        |||||||    
T  15840613 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcttttttatataaattttcttaaaac 15840514  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  15840513 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 15840441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 17602467 - 17602294
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| | ||||||||||||||||||        |||||||    
T  17602467 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataatactaaaattgcccttttatataaattttcttaaaac 17602368  T
Q  150 cctaattttattcattgtcggtgagtttcaccctctttta-ccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  17602367 cctaattttattcattgtcagtgagtttcaccctctttcacccccacaaagcgatcgatcaaacaatttgatgt 17602294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 26290033 - 26290205
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  26290033 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 26290132  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  26290133 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagagatcgatcaaacaatctgatgt 26290205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 26303290 - 26303462
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  26303290 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 26303389  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  26303390 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagagatcgatcaaacaatctgatgt 26303462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 26315284 - 26315456
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  26315284 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 26315383  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  26315384 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagagatcgatcaaacaatctgatgt 26315456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 16633891 - 16633971
Alignment:
Q  142 tttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  16633891 tttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 16633971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 5599240 - 5599319
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5599240 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 5599319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 5636035 - 5635956
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5636035 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 5635956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 26121958 - 26122037
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  26121958 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 26122037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 3032198 - 3032370
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||| ||||||||||||||||         ||||| |||||| |||||||||||||        |||||||    
T  3032198 tttttctatttacaccccatgtttttctggttatacccaaattttcttaatttttttttataataccaaaactgcccttttatataaattttcttaaaac 3032297  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
     |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  3032298 tctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 3032370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 8376973 - 8376867
Alignment:
Q  116 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 215  Q
    |||||||||||||||||||        |||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||||    
T  8376973 caaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagcgagtttcaccctctttcaccccacaaagcgatcgatcaaacaat 8376874  T
Q  216 ttgatgt 222  Q
    |||||||    
T  8376873 ttgatgt 8376867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 34564383 - 34564488
Alignment:
Q  115 ccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaa 214  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||||    
T  34564383 ccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcaatgagtttcaccctctttcaccccataaagggatcgatcaaacaa 34564482  T
Q  215 tttgat 220  Q
    ||||||    
T  34564483 tttgat 34564488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 35606100 - 35605987
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| |||||||| |||||||||||        |||||||| ||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  35606100 ataataccaaaattccccttttatataaattttcttaaaaccttaattttattcattgtcagtgaatttcaccctctttcaccccataaagcgatcgatc 35606001  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  35606000 aaacaatttgatgt 35605987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 42512910 - 42512831
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||| |||||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||    
T  42512910 ttaaaactctaattttattcattgtcagtgagtttcaccctatttcaccccacaaagcgatcgatcaaacaatttgatgt 42512831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 23356615 - 23356714
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        |||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  23356615 ataataccaaaattgcccttttatataaattttcttaaaaccttaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 23356714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 3136525 - 3136670
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        ||||||||||||||||||||||||||  |||||||    
T  3136525 ggttacacccaaattttcttaaaagttttttataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcactgagttt 3136624  T
Q  178 caccctcttttaccccataaagcgatc--gatcaaacaatttgatgt 222  Q
    |||||||||| ||||||  ||||||||  || |||||||||||||||    
T  3136625 caccctctttcacccca-caagcgatcatgagcaaacaatttgatgt 3136670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 26294413 - 26294550
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  26294413 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 26294512  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttt 187  Q
    |||||||||||||||||||  ||||||||||| |||||    
T  26294513 cctaattttattcattgtcactgagtttcaccatcttt 26294550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 26307670 - 26307807
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  26307670 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 26307769  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttt 187  Q
    |||||||||||||||||||  ||||||||||| |||||    
T  26307770 cctaattttattcattgtcactgagtttcaccatcttt 26307807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 12713392 - 12713535
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||| ||||||||||        |||||||    
T  12713392 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataatatcaaaattgtccttttatataaattttcttaaaac 12713491  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttacccc 193  Q
    |||||||||||||||||||  ||||||||||||||||| |||||    
T  12713492 cctaattttattcattgtcactgagtttcaccctctttcacccc 12713535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 5988877 - 5988797
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  5988877 ttaaaaccctaattttattcattgtcattgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 5988797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 6468969 - 6469141
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  6468969 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 6469068  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  6469069 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 6469141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 25085792 - 25085649
Alignment:
Q  79 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 178  Q
    |||||||||||||||| |||||        ||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||    
T  25085792 gttacacccaaatttttttaaaagttttttataattccaaaattgcccttttatataattttttttaaaaccctaattttattcattgtcagtgagtttc 25085693  T
Q  179 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||    
T  25085692 accctctttcaccccacaaagcgatcgattaaacaatttgatgt 25085649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 25143734 - 25143621
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||     
T  25143734 ataattccaaaattgcccttttatataattttttttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatt 25143635  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  25143634 aaacaatttgatgt 25143621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 33281643 - 33281499
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  33281643 ggttacacccaaattttcttaaaaaaaaattataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 33281544  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||    
T  33281543 caccctctttcatcccataaagcgatagatcaaacaatttgatgt 33281499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 31510738 - 31510881
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        ||||||| |||||||||||||||||| ||||||||    
T  31510738 ggttacacccaaattttcttaaattttttt-ataatatcaaaattgcccttttatataaattttcttaaaactctaattttattcattgtcagtgagttt 31510836  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  31510837 caccctctttcaccccataaagcgatcgatcaaacaatttgatgt 31510881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 37866694 - 37866522
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||| ||||||||||||||         |||||  |||||||||||||||||||       ||||||||    
T  37866694 tttttctatttacaccccatgtttttctggttacatccaaattttcttaatttttttttataatatcaaaattgcccttttatataattttttttaaaac 37866595  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  37866594 cctaattttattcattgtcagtgagtttcactctctttcaccccacaaagcgatcgatcaaacaatttgatgt 37866522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 38759660 - 38759832
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       | ||||||| |||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  38759660 tttttctatttacaccccatgtttttctgattacacctaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 38759759  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  38759760 cctaattttattcattgtcaatgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 38759832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 43292978 - 43293121
Alignment:
Q  79 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 178  Q
    ||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||||||||||||||||||||| |||||||||    
T  43292978 gttacacccaaattttcttaaaaaaaatttataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttc 43293077  T
Q  179 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||| |||||  |||||||||||||||||||||||||||||||||    
T  43293078 accttctttccccccataaagcgatcgatcaaacaatttgatgt 43293121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 4155469 - 4155582
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  4155469 ataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 4155568  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  4155569 aaacaatttgatgt 4155582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 51 - 222
Target Start/End: Complemental strand, 9066500 - 9066330
Alignment:
Q  51 ttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaacc 150  Q
    ||||||||||||||| ||||       |||||||||||||||||||||||        ||||| | ||||||||||||||||||        ||| ||||    
T  9066500 ttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttt-ataatacaaaaattgcccttttatataaattttcttagaacc 9066402  T
Q  151 ctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  9066401 ctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgatcgatcaaataatttgatgt 9066330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 29921202 - 29921089
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||| ||||||||||        |||||||||||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||    
T  29921202 ataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgccagtgagtttcaccctctttcaccccacaaagcgatcgatc 29921103  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  29921102 aaacaatttgatgt 29921089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 13145250 - 13145328
Alignment:
Q  144 taaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||| |||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  13145250 taaagccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 13145328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 19034040 - 19034159
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcg------gtgagtttcaccctcttttaccccataaagcga 202  Q
    ||||| |||||||||| |||||||||       |||||||||||||||||||||||||||       |||||||||||||||||| |||||| |||||||    
T  19034040 ataataccaaaattgctcttttatataaatttttttaaaaccctaattttattcattgtcattgttagtgagtttcaccctctttcaccccacaaagcga 19034139  T
Q  203 tcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||||    
T  19034140 tcgatcaaacaatttgatgt 19034159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 19616878 - 19617041
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  19616878 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 19616977  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||    |||||||||||||||||| ||||||     | |||||||||||||||||||||    
T  19616978 cctaattttattcatt----gtgagtttcaccctctttcacccca-----caatcgatcaaacaatttgatgt 19617041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 43517586 - 43517702
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        ||||||||||||||||||||||||||  |||||||    
T  43517586 ggttacacccaaattttcttaaaagttttttataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcactgagttt 43517685  T
Q  178 caccctcttttacccca 194  Q
    |||||||||| ||||||    
T  43517686 caccctctttcacccca 43517702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 24559874 - 24559771
Alignment:
Q  79 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 178  Q
    ||||||||||||||||||||||        ||||| ||||||||| ||| ||||||        |||||||||||||||||||||||||  |||||||||    
T  24559874 gttacacccaaattttcttaaattttttttataataccaaaattgtcctattatataaattttcttaaaaccctaattttattcattgtaagtgagtttc 24559775  T
Q  179 accc 182  Q
    ||||    
T  24559774 accc 24559771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 24600843 - 24600804
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccc 182  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  24600843 ttaaaaccctaattttattcattgtaagtgagtttcaccc 24600804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 35896574 - 35896402
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  35896574 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 35896475  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  35896474 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 35896402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 37094854 - 37094710
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||    
T  37094854 ggttacacccaaattttcttaaatttgttttataataccaaaattgcccttttatataaattttcttaaaaccttaattttattcattgtcagtgagttt 37094755  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  37094754 caccctcttttaccccacaaagcgatcgatcaaacaatttgatgt 37094710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 25852653 - 25852825
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  25852653 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 25852752  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  25852753 cctaattttattcattgtcagtgagtttcactctctttcaccccacaaagcgatcgatcaaacaatttgatgt 25852825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 32550906 - 32551050
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| ||||||||||| ||||||||        |||||||||||||||||||||||||| ||||||||    
T  32550906 ggttacacccaaattttcttaaaagttttttataataccaaaattgcctttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 32551005  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  32551006 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 32551050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 42343778 - 42343608
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    ||||||||||||||||| |||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  42343778 tttttctatttacaccttatgtttttctggttacacccaaattttcttaa--tttttttataataccaaaattgcccttttatatcatttttcttaaaac 42343681  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  42343680 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 42343608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 2389935 - 2390106
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  2389935 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataatttttcttaaaac 2390033  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  2390034 cctaattttattcattgtcagtgagtttcaccctctttcaccacacaaagcgatcgatcaaacaatttgatgt 2390106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 21658738 - 21658567
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  21658738 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataatttttcttaaaac 21658640  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  21658639 cctaattttattcattgtcagtgagtttcaccctctttcaccacacaaagcgatcgatcaaacaatttgatgt 21658567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 43577692 - 43577579
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  43577692 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 43577593  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  43577592 aaacaatttgatgt 43577579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 927816 - 927645
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  927816 tttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataataccaaaattgcccttttatataaattttcttaaaac 927718  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  927717 cctaattttattcattgtcaatgagtttcaccctcttttaccccacaaagcgatctatcaaacaatttgatgt 927645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 3179000 - 3178887
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||    
T  3179000 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaaacgatcgatc 3178901  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  3178900 aaacaatttgatgt 3178887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 13195513 - 13195626
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| |||||||| |||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  13195513 ataataccaaaatttcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 13195612  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  13195613 aaacaatttgatgt 13195626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 1521009 - 1520865
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||  ||||||||    
T  1521009 ggttacacccaaattttcttaaattttttttataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgttagtgagttt 1520910  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||    
T  1520909 caccctctttcaccccacaaagcgatcgatcatacaatttgatgt 1520865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 39697079 - 39697251
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    ||||||||||||||||||||        ||||||| |||||||||||||||        ||||| ||||||||| | ||||||||        |||||||    
T  39697079 tttttctatttacacctcatatttttctggttacatccaaattttcttaaattttttttataataccaaaattgtcattttatataaattttcttaaaac 39697178  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||||||    
T  39697179 cctaattttattcattgtcggtgagttttaccctctttcaccccacaaagcgatcaatcaaacaatttgatgt 39697251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 40811048 - 40811161
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        |||||||| |||||||||| |||||| |||||||||||||||||| |||||| |||||||||||||    
T  40811048 ataataccaaaattgcccttttatataaattttcttaaaaccataattttatttattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 40811147  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  40811148 aaacaatttgatgt 40811161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 44144169 - 44144056
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        ||||||||||||||||||||||||||  ||||||||||||||||| |||||| || ||||||||||    
T  44144169 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcaatgagtttcaccctctttcaccccacaaggcgatcgatc 44144070  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  44144069 aaacaatttgatgt 44144056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 1482592 - 1482513
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  1482592 ttaaaaccctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 1482513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 34203030 - 34202951
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||    
T  34203030 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcatcccacaaagcgatcgatcaaacaatttgatgt 34202951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 27980312 - 27980377
Alignment:
Q  157 ttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||| || |||||||||||||||||| | |||| |||||||| ||||||||||||||||||    
T  27980312 ttattcattctcagtgagtttcaccctctttcatcccacaaagcgatggatcaaacaatttgatgt 27980377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 28066842 - 28066907
Alignment:
Q  157 ttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||| || |||||||||||||||||| | |||| |||||||| ||||||||||||||||||    
T  28066842 ttattcattctcagtgagtttcaccctctttcatcccacaaagcgatggatcaaacaatttgatgt 28066907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 10639496 - 10639383
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cga 206  Q
    ||||| ||||||||| ||||||||||        ||||||||||||||||||||||||||  |||||||||||||| || ||||||  |||||||  |||    
T  10639496 ataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcactgagtttcaccctc-ttcacccca-caagcgatcacga 10639399  T
Q  207 tcaaacaatttgatgt 222  Q
    ||||||||||||||||    
T  10639398 tcaaacaatttgatgt 10639383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 2481926 - 2482098
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  2481926 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 2482025  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  2482026 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 2482098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 44722696 - 44722552
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||    
T  44722696 ggttacacccaaattttcttaaattttttttataatatcaaaattgcccttttatataaatttttttaaaaccctaattttattcattgtcagtgagttt 44722597  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  44722596 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 44722552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 34270037 - 34270209
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  34270037 tttttctatttacaccccatgtttttctggttacatccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 34270136  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  34270137 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 34270209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 34276272 - 34276444
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  34276272 tttttctatttacaccccatgtttttctggttacatccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 34276371  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  34276372 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 34276444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 40535923 - 40536094
Alignment:
Q  51 ttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaacc 150  Q
    ||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||||||    
T  40535923 ttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 40536022  T
Q  151 ctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  40536023 ctaattttattcattgtcaatgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 40536094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 2137663 - 2137807
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||| ||||||||    
T  2137663 ggttacacccaaattttcttaaaaaaaaattataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 2137762  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  2137763 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 2137807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 11172647 - 11172791
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  11172647 ggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 11172746  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||  |||||||||||||||||||||||||||    
T  11172747 caccctctttcacccctcaaagcgatcgatcaaacaatttgatgt 11172791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 215
Target Start/End: Complemental strand, 15941662 - 15941497
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  15941662 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaatttttttataataccaaaattgcccttttatataaattttcttaaaac 15941563  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 215  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  15941562 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaat 15941497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 24317997 - 24317826
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  24317997 tttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataataccaaaattgcccttttatataaattttcttaaaac 24317899  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  24317898 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 24317826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 39568652 - 39568823
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||| ||||||||        |||||||    
T  39568652 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatt-ataataccaaaattgcctttttatataaattttcttaaaac 39568750  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  39568751 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 39568823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 39983130 - 39983017
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  39983130 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 39983031  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  39983030 aaacaatttgatgt 39983017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 28852103 - 28852275
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||| ||        |||||||    
T  28852103 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaaattataataccaaaattgcccttttacataaattttcttaaaac 28852202  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||| |||||||| ||||||||||||||||||    
T  28852203 cctaattttattcattgtcagtgagtttcaacctctttcaccccacaaagcgattgatcaaacaatttgatgt 28852275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 52043698 - 52043841
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||| |||||||||||||||||||||| ||||||||    
T  52043698 ggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataaattttcttagaaccctaattttattcattgtcagtgagttt 52043796  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||    
T  52043797 caccctcttttaccccacaaagcgatcgatcaaataatttgatgt 52043841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 225
Target Start/End: Complemental strand, 20582414 - 20582240
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||| ||||||||||       || |||||    
T  20582414 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgtccttttatataaatttctt-aaaac 20582316  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgtcca 225  Q
    ||||||||||| | ||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  20582315 cctaattttatacgttgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgtcca 20582240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 50728582 - 50728502
Alignment:
Q  142 tttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  50728582 tttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 50728502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 26163888 - 26163967
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  26163888 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 26163967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 33010010 - 33010150
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| ||||||||||||||||| ||        |||||||||||||||||||||||||| |||| |||    
T  33010010 ggttacacccaaattttcttaaattttttttataataccaaaattgcccttttacataaattttcttaaaaccctaattttattcattgtcagtgaattt 33010109  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttg 218  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  33010110 caccctctttcaccccacaaagcgatcgatcaaacaatttg 33010150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 49823990 - 49823846
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    ||||| |||||||||||||||||        ||||| ||||||||||| ||||||||        |||||||||||||||||||| ||||| ||||||||    
T  49823990 ggttatacccaaattttcttaaattttttttataataccaaaattgcctttttatataaattttcttaaaaccctaattttattcgttgtcagtgagttt 49823891  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  49823890 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 49823846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 6653927 - 6653756
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| | ||||||||||||||||||        |||||||    
T  6653927 tttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataatactaaaattgcccttttatataaattttcttaaaac 6653829  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  6653828 cctaattttattcattgtcagtgagtttcaccctctgtcaccccacaaagcgatcgatcaaacaatttgatgt 6653756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 42949009 - 42948837
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        || |||     
T  42949009 tttttctatttacaccccatgtttttttggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttctttaaat 42948910  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  42948909 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 42948837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 51676555 - 51676660
Alignment:
Q  116 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 215  Q
    |||||||||||||||||||        |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  51676555 caaaattgcccttttatataaattttcttaaaacc-taattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaat 51676653  T
Q  216 ttgatgt 222  Q
    |||||||    
T  51676654 ttgatgt 51676660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 14246574 - 14246687
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||| | |||||||||| ||||||| |||||| |||||||||||||    
T  14246574 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgccagtgagtttcatcctctttcaccccacaaagcgatcgatc 14246673  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  14246674 aaacaatttgatgt 14246687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 52025410 - 52025297
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        ||||||||||||||||||| |||||| |||||||||||||||||| || ||| |||||||| ||||    
T  52025410 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttatttattgtcagtgagtttcaccctctttcactccacaaagcgattgatc 52025311  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  52025310 aaacaatttgatgt 52025297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 18909900 - 18909821
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||| | ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  18909900 ttaaaatcttaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 18909821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 40400844 - 40400671
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  40400844 tttttctatttacaccccatgtttttttggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 40400745  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  40400744 cctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 40400671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 13234595 - 13234730
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  13234595 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 13234694  T
Q  150 cctaattttattcattgtcggtgagtttcaccctct 185  Q
    ||||||||||||||||||| ||||||||||||||||    
T  13234695 cctaattttattcattgtcagtgagtttcaccctct 13234730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 7142032 - 7141860
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  ||||||| |||||||||||        |||||||    
T  7142032 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatttataatatcaaaattacccttttatatatattttcttaaaac 7141933  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7141932 cctaattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaatttgatgt 7141860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 18894563 - 18894391
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        ||||||     
T  18894563 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaattttataatatcaaaattgcccttttatataaattttcttaaaat 18894464  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18894463 cctaattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaatttgatgt 18894391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 25332153 - 25332325
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||   ||||||||||||||||||        |||||||    
T  25332153 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaatatttataataaaaaaattgcccttttatataaattttcttaaaac 25332252  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  25332253 cctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgatctatcaaacaatttgatgt 25332325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 6626124 - 6625980
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||    
T  6626124 ggttacacccaaattttcttaaattttttttataatatcaaaattgcccttttatataaattttcttaaaaccttaattttattcattgtcagtgagttt 6626025  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| || |||||||||||||||||||||||||||||||    
T  6626024 caccctctttcactccataaagcgatcgatcaaacaatttgatgt 6625980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 6167252 - 6167423
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| | ||||||||||||||||||        |||||||    
T  6167252 tttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataatacaaaaattgcccttttatataaattttcttaaaac 6167350  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||| |||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  6167351 cctagttttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 6167423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 13889339 - 13889482
Alignment:
Q  79 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 178  Q
    ||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||| ||||||||||||||||||| |||||||||    
T  13889339 gttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataaattttcttaaaatcctaattttattcattgtcagtgagtttc 13889437  T
Q  179 accctctttta-ccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||    
T  13889438 accctctttcacccccacaaagcgatcgatcaaacaatttgatgt 13889482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 29121690 - 29121796
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||| | ||||| | |||| |||||||||||||    
T  29121690 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcatcatctttcatcccacaaagcgatcgatc 29121789  T
Q  209 aaacaat 215  Q
    || ||||    
T  29121790 aatcaat 29121796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 25331743 - 25331634
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    ||||||| |||||||||||||||        |||||  |||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  25331743 ggttacatccaaattttcttaaaaaaaatttataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 25331644  T
Q  178 caccctcttt 187  Q
    ||||||||||    
T  25331643 caccctcttt 25331634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 3095273 - 3095193
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 222  Q
    |||||| |||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  |||||||||||||||||||    
T  3095273 ttaaaatcctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgatcaaacaatttgatgt 3095193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 29629858 - 29629938
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  29629858 ttaaaaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgaacaaacaatttgatgt 29629938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 19873356 - 19873528
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||| ||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  19873356 tttttctatttacaccccatgtttttctggttgcacccaaattttcttaaaaaaaaattataataccaaaattgcccttttatataaattttcttaaaac 19873455  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  19873456 cctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgattgatcaaacaatttgatgt 19873528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 20434931 - 20434759
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||| ||        ||||| ||||||||||||||||||||        |||||||    
T  20434931 tttttctatttacaccccatgtttttctggttacacccaaattttctttaaaaaaaattataataccaaaattgcccttttatataaattttcttaaaac 20434832  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  20434831 cctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgattgatcaaacaatttgatgt 20434759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 28405715 - 28405887
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||       ||||||||    
T  28405715 tttttctatttacaccccatgtttttctggttacatccaaattttcttaaaatttttttataataccaaaattgcccttttatatataaaaatttaaaac 28405814  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  28405815 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatggatcaaacaatttgatgt 28405887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 43829524 - 43829695
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  43829524 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataaattttcttaaaac 43829622  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  43829623 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 43829695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 42349491 - 42349347
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||| ||||||||    
T  42349491 ggttacacccaaattttcttaaaaaaaatttataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 42349392  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  42349391 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 42349347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 42723410 - 42723582
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||| ||        |||||||    
T  42723410 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaaattataataccaaaattgcccttttacataaattttcttaaaac 42723509  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  42723510 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgattgatcaaacaatttgatgt 42723582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 52912429 - 52912601
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||| ||        |||||  |||||||||||||||||||        |||||||    
T  52912429 tttttctatttacaccccatgtttttctggttacacccaaattttctttaaaaaaatttataatatcaaaattgcccttttatataaattttcttaaaac 52912528  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  52912529 cctaattttattcattgtcagtgagtttcgccctctttcaccccataaagcgatcgatcaaacaatttgatgt 52912601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 55214872 - 55215044
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  55214872 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 55214971  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  55214972 cctaattttattcattgtgagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 55215044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 55220686 - 55220514
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  55220686 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 55220587  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  55220586 cctaattttattcattgtgagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 55220514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 56363522 - 56363350
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       | |||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  56363522 tttttctatttacaccccatgtttttctgattacacccaaattttcttaaaaactttttataataccaaaattgcccttttatataaattttcttaaaac 56363423  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  56363422 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcaatcgatcaaacaatttgatgt 56363350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 20738565 - 20738394
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||| |||||        ||||| ||||||||||||||||||||        |||||||    
T  20738565 tttttctatttacaccccatgtttttctggttacacccaaatttttttaaaagttttt-ataataccaaaattgcccttttatataaattttcttaaaac 20738467  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  20738466 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 20738394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 56017717 - 56017889
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  56017717 tttttctatttacaccccatgtttttctggttacatccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 56017816  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    | ||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  56017817 cttaattttattcattgccagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 56017889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 38291228 - 38291333
Alignment:
Q  117 aaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatt 216  Q
    ||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  38291228 aaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatt 38291327  T
Q  217 tgatgt 222  Q
    ||||||    
T  38291328 tgatgt 38291333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 23894557 - 23894636
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23894557 ttaaaaccttaattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaatttgatgt 23894636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 46563781 - 46563924
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  46563781 ggttacacccaaattttcttaaattttttt-ataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 46563879  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| ||| || |||||||||||||||||||||||||||    
T  46563880 caccctctttcacctcacaaagcgatcgatcaaacaatttgatgt 46563924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 37233441 - 37233614
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||| |||||||||||||        ||||| ||||||||| ||||||||||        |||||||    
T  37233441 tttttctatttacaccccatgtttttctggttacacctaaattttcttaaaatttttttataataccaaaattgtccttttatataaattttcttaaaac 37233540  T
Q  150 cctaattttattcattgtcggtgagtttcaccctctttta-ccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||||||||||||||||    
T  37233541 cctaattttattcattgtcagtgagttttaccctctttcacccccacaaagcgatcgatcaaacaatttgatgt 37233614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 39539829 - 39539908
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  39539829 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcactccacaaagcgatcgatcaaacaatttgatgt 39539908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 55182796 - 55182968
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||| |||||||||||||||        |||||   ||||||||||||||||||        ||||||     
T  55182796 tttttctatttacaccccatgtttttttggttacatccaaattttcttaaattttttttataatattaaaattgcccttttatataaattttcttaaaat 55182895  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  55182896 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 55182968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 614590 - 614474
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgat- 207  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||     
T  614590 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 614491  T
Q  208 --caaacaatttgatgt 222  Q
      |||||||||||||||    
T  614490 aacaaacaatttgatgt 614474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 53874379 - 53874485
Alignment:
Q  116 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 215  Q
    |||||||||||||||||||        |||||||  ||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||    
T  53874379 caaaattgcccttttatataaattttcttaaaactttaattttattcattgtcagtgagttttaccctctttcaccccataaagcgatcgatcaaacaat 53874478  T
Q  216 ttgatgt 222  Q
    |||||||    
T  53874479 ttgatgt 53874485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 52839050 - 52839163
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| | |||| ||| |||| ||||    
T  52839050 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcatcccacaaaccgattgatc 52839149  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  52839150 aaacaatttgatgt 52839163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 1356321 - 1356494
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  1356321 tttttctatttacaccccatgtttttttggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 1356420  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  1356421 cctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 1356494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 10541383 - 10541557
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgccctttt-atatnnnnnnntttaaaa 148  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| |||||||||||||||| ||||        ||||||    
T  10541383 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgccctttttatataaattttcttaaaa 10541482  T
Q  149 ccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  10541483 ccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 10541557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 181
Target Start/End: Complemental strand, 5098848 - 5098717
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        | ||| |||||||||| |||||||||        |||||||    
T  5098848 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaattttaaaataccaaaattgcacttttatataaattttcttaaaac 5098749  T
Q  150 cctaattttattcattgtcggtgagtttcacc 181  Q
    ||||||||||||||||||| ||||||||||||    
T  5098748 cctaattttattcattgtcagtgagtttcacc 5098717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 25858352 - 25858309
Alignment:
Q  179 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||| |||||| |||||||||||||||||||||||||||    
T  25858352 accctctttcaccccacaaagcgatcgatcaaacaatttgatgt 25858309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 22781077 - 22781249
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| |||||||||| |||||||||        |||||||    
T  22781077 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgctcttttatataaattttcttaaaac 22781176  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  22781177 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 22781249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 33967738 - 33967566
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  33967738 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaaattataataccaaaattgcccttttatataaattttcttaaaac 33967639  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  33967638 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgattgatcaaacaatttgatgt 33967566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 37970941 - 37971113
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  37970941 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 37971040  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  37971041 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 37971113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 10840662 - 10840830
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  10840662 tttttctatttacaccccatgtttttttggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 10840761  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttg 218  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  10840762 cctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttg 10840830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 41070703 - 41070535
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  41070703 tttttctatttacaccccatgtttttttggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 41070604  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttg 218  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  41070603 cctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttg 41070535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 25711719 - 25711575
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| |||||||| || ||||||||        |||||||||||||||||||||||||| ||||||||    
T  25711719 ggttacacccaaattttcttaaaatttttttataataccaaaattacctttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 25711620  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  25711619 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 25711575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 38871916 - 38871772
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    ||||||| |||||||||||||||        |||||  |||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  38871916 ggttacatccaaattttcttaaaaaatttttataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 38871817  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  38871816 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 38871772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 32237119 - 32236947
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  32237119 tttttctatttacaccccatgtttgtctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 32237020  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||| |||||||||||||| |||||||||||||||||| |||||  ||| |||||||||||||||||||||||    
T  32237019 cctacttttattcattgtcagtgagtttcaccctctttcacccctcaaaacgatcgatcaaacaatttgatgt 32236947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 33711980 - 33712123
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  33711980 ggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataaatattcttaaaaccctaattttattcattgtcagtgagttt 33712078  T
Q  178 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||| |||||| |||| ||||||||||||||||||||||    
T  33712079 caccctctttcaccccacaaagtgatcgatcaaacaatttgatgt 33712123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 36431135 - 36430967
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||    
T  36431135 tttttctatttacaccccatgtttttttggttacacccaaattttcttaaattttttttataataccaaaattgtccttttatataaattttcttaaaac 36431036  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttg 218  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  36431035 cctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttg 36430967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 20834845 - 20834951
Alignment:
Q  116 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 215  Q
    |||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  20834845 caaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaat 20834944  T
Q  216 ttgatgt 222  Q
    |||||||    
T  20834945 ttgatgt 20834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 4515366 - 4515445
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  4515366 ttaaaaccctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgattgatcaaacaatttgatgt 4515445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 4044045 - 4044217
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||       ||||||||    
T  4044045 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataattttttttaaaac 4044144  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||| |||||   |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  4044145 cctaattttatccattggtagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 4044217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 24395989 - 24395846
Alignment:
Q  79 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 178  Q
    ||||||||||||||||||||||        ||||| |||||||||||||| |||||        |||||||||||||||||||||||| | |||||||||    
T  24395989 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttatatataaattttcttaaaaccctaattttattcattgacagtgagtttc 24395890  T
Q  179 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||    
T  24395889 accctctttcaccccacaaagtgatcgatcaaacaatttgatgt 24395846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 20656522 - 20656694
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||| ||||||||||        |||||||    
T  20656522 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataatatcaaaattgtccttttatataaattttcttaaaac 20656621  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||| |||||||||||||| |||||||||||||||||| |||||  ||||  |||||||||||||||||||||    
T  20656622 cctacttttattcattgtcagtgagtttcaccctctttcacccctcaaagaaatcgatcaaacaatttgatgt 20656694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 7149235 - 7149370
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  7149235 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 7149334  T
Q  150 cctaattttattcattgtcggtgagtttcaccctct 185  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7149335 cctaattttattcattgtcagtgagtttcaccctct 7149370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 20049100 - 20048955
Alignment:
Q  78 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 177  Q
    |||||||||||||||||||||||        ||||| |||||||||  |||||||||        ||||||||||||||||||||||||||  |||||||    
T  20049100 ggttacacccaaattttcttaaaagttttttataataccaaaattgttcttttatataaattttcttaaaaccctaattttattcattgtcactgagttt 20049001  T
Q  178 caccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 222  Q
    |||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  20049000 caccctctttcacccca-caagcgatcacgaacaaacaatttgatgt 20048955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 40585484 - 40585564
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  |||||||||||||||||||    
T  40585484 ttaaaaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgatcaaacaatttgatgt 40585564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 672883 - 672720
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||| |||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  672883 tttttctatttacaccccatgtttttctggttacacctaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 672784  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||    |||||||||||||||||| ||||||     | |||||||||||||||||||||    
T  672783 cctaattttattcatt----gtgagtttcaccctctttcacccca-----caatcgatcaaacaatttgatgt 672720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 10999078 - 10999192
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cga 206  Q
    ||||| |||||||||||||||||| |        ||||||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  |||    
T  10999078 ataataccaaaattgcccttttatgtaaattttcttaaaaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacga 10999176  T
Q  207 tcaaacaatttgatgt 222  Q
    ||||||||||| ||||    
T  10999177 tcaaacaatttaatgt 10999192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 53975032 - 53974929
Alignment:
Q  109 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 208  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||          |||||| |||||||||||||    
T  53975032 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttc----------accccacaaagcgatcgatc 53974943  T
Q  209 aaacaatttgatgt 222  Q
    ||||||||||||||    
T  53974942 aaacaatttgatgt 53974929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 6267664 - 6267703
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccc 182  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  6267664 ttaaaaccctaattttattcattgtcagtgagtttcaccc 6267703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 41346 - 41174
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         |||||  |||||||||||||||||||        |||||||    
T  41346 tttttctatttacaccccatgtttttttggttacacccaaattttcttaatttttttttataatatcaaaattgcccttttatataaattttcttaaaac 41247  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  41246 cctaattttattcattgtcagtgagtttcaccctctttcatcccataaagcgatcgatcaaacaatttgatgt 41174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 1370 - 1542
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  1370 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 1469  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  1470 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagagatcgatcaaacaatctgatgt 1542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 4738 - 4659
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  4738 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 4659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 14682 - 14510
Alignment:
Q  50 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 149  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        || |||     
T  14682 tttttctatttacaccccatgtttttttggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttctttaaat 14583  T
Q  150 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  14582 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 14510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 156453 - 156522
Alignment:
Q  143 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 222  Q
    |||||||||||||||||||||||||| |||||||||          |||||| |||||||||||||||||||||||||||    
T  156453 ttaaaaccctaattttattcattgtcagtgagtttc----------accccacaaagcgatcgatcaaacaatttgatgt 156522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University