View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_38 (Length: 221)
Name: NF12671_low_38
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 35310083 - 35309896
Alignment:
| Q |
18 |
cctatctcacttaaatcgcgtcctttttacgttgtaataatttgatagcaattctttcacaaaa-ttatttaacttcaactttagtgtatcatctagcaa |
116 |
Q |
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| T |
35310083 |
cctatctcacataaatcgcgtccttcttacgttgtaataatttgatagcaattctttcacaaaaattatttaaccttaactttagtgtatcatctagcaa |
35309984 |
T |
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| Q |
117 |
tattatcacaaccaattctttgacaaacaaacgagaagatctctataattgagatatactttgtccggtaaaatgattgaaagcttct |
204 |
Q |
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| T |
35309983 |
tattatcacaaccaactctttgacaaacaaacgagaagatcgctataattgtgatatactttatctggtaaaatgattgaaagcttct |
35309896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 47941372 - 47941577
Alignment:
| Q |
22 |
tctcacttaaatcgcgtcctttttacgttgtaataatttgatagcaattctttcacaaaat-tatttaacttcaactttagtgtatcatcta-------- |
112 |
Q |
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|||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |
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| T |
47941372 |
tctcacataaatcgcgtcctttgtacgttgtaat---ttgatagcaattctttcacaaaaaatatttaaccttaactttagtgtatcatctacgtgtttc |
47941468 |
T |
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| Q |
113 |
----gcaatattatcacaaccaattctttgac---------aaacaaacgagaagatctctataattgagatatac-tttgtccggtaaaatgattgaaa |
198 |
Q |
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|||||||||| |||| ||| |||||||| ||||||||||||||||| ||||||||| ||||||| |||||| |||||||||||||||| |
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| T |
47941469 |
tcaagcaatattattacaatcaactctttgacacaaatgacaaacaaacgagaagatcgctataattgtgatatacttttgtctggtaaaatgattgaaa |
47941568 |
T |
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| Q |
199 |
gcttctctg |
207 |
Q |
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| T |
47941569 |
gcttctctg |
47941577 |
T |
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