View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_7 (Length: 479)
Name: NF12671_low_7
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 11 - 475
Target Start/End: Complemental strand, 56345036 - 56344572
Alignment:
| Q |
11 |
acatcaataaagatcttatgaaatggaaacaaaaattgcactcacaactccgaccaccaaagaatgaaccgtcgggtttggtatcaacgaccgcatatga |
110 |
Q |
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| T |
56345036 |
acatcaataaagatcttatgaaatggaaacaaaaattgcactcacaactccgaccaccaaagaatgaaccgtcgggtttggtatcaacgaccgcatatga |
56344937 |
T |
|
| Q |
111 |
tccagctatgatgtccataataaggccagctagttgagacatcaaaaccattggatcaactccggagtccatcaattctctagaccttttcaccgtctct |
210 |
Q |
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| T |
56344936 |
tccagctatgatgtccataataaggccagctagttgagacatcaaaaccattggatcaactccggagtccatcaattctctagaccttttcaccgtctct |
56344837 |
T |
|
| Q |
211 |
gcagtgtctgatgacattgctaattctaaaagttccaataatttttcatctgaaacaactcccacctgtttcaagtaataccaaaaaacattatttgtaa |
310 |
Q |
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| T |
56344836 |
gcagtgtctgatgacattgctaattctaaaagttccaataatttttcatctgaaacaactcccacctgtttcaagtaataccaaaaaacattatttgtaa |
56344737 |
T |
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| Q |
311 |
atgatatccatgcaaccaaaagaaaaacttcagtgaaaatcaaaagcattgtctgaactgttccatttcaaagaaaaatagagacaacaaactcacaagt |
410 |
Q |
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| T |
56344736 |
atgatatccatgcaaccaaaagaaaaacttcagtgaaaatcaaaagcattgtctgaactgttccatttcaaagaaaaatagagacaacaaactcacaagt |
56344637 |
T |
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| Q |
411 |
tcgttgacaagagaagtagtgattctttttcccagcaaactaagctgttctaacattgtctctgc |
475 |
Q |
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| T |
56344636 |
tcgttgacaagagaagtagtgattctttttcccagcaaactaagctgttctaacattgtctctgc |
56344572 |
T |
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