View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12671_low_8 (Length: 478)
Name: NF12671_low_8
Description: NF12671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12671_low_8 |
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| [»] scaffold0291 (2 HSPs) |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Original strand, 7915171 - 7915618
Alignment:
| Q |
20 |
aggtggttgtctcggacgaaaccgatagttccataagccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatc |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915171 |
aggtggttgtctcggacgaaaccgatagttccataagccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatc |
7915270 |
T |
|
| Q |
120 |
aaaaagaggatgtgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915271 |
aaaaagaggatgtgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggaca |
7915370 |
T |
|
| Q |
220 |
tcacacgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915371 |
tcacacgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagc |
7915470 |
T |
|
| Q |
320 |
tctaccaagcctcattgcaacaatattcattgcttggtaccttaagttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttgggagtaaa |
419 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7915471 |
tctaccaagcctcattgcaacaatattcattgcttggtaccttaagttgtcaatttgattaactgtgaaaggttgtaaataatgcatctttgggagtaaa |
7915570 |
T |
|
| Q |
420 |
ggttggccataaatatgaaacatgttagctagtgagagtgcagtgaac |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915571 |
ggttggccataaatatgaaacatgttagctagtgagagtgcagtgaac |
7915618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 7834128 - 7833874
Alignment:
| Q |
24 |
ggttgtctcggacgaaaccgatagttccataagccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatcaaaa |
123 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||||||||||| ||||| ||||||| || || ||||||||||||||||||||||||| || |||||||| |
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| T |
7834128 |
ggttgtcgaggacgaaattgatagtttcataagccaatcaaggacatgaagagaaatcaagtcggtagtatcaattctggataccatatcagtatcaaaa |
7834029 |
T |
|
| Q |
124 |
agaggatgtgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacatcac |
223 |
Q |
| |
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|||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| || || || ||| || ||||||||||||| |
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| T |
7834028 |
agaggatgtgaactagaattgacgtgatgtgattcttccaatgacaaacatcattgaaccatcttccgatggtcattaatccgaaggaaagggacatcac |
7833929 |
T |
|
| Q |
224 |
acgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatcc |
278 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7833928 |
acgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatcc |
7833874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 33 - 266
Target Start/End: Original strand, 7832924 - 7833158
Alignment:
| Q |
33 |
ggacgaaaccgatagttccataagccaatcaagaacatgtagagaa-aacatgttggtagtatcaattctggataccataccaatatcaaaaagaggatg |
131 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||| ||||||||| || | ||||||||||||||||| |||||| | || | |||||||||||||||| |
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| T |
7832924 |
ggacaaaaccgatagttccataagccaatgaagaacttgtagagaagaaaaagttggtagtatcaattcaggatactacacaagtatcaaaaagaggatg |
7833023 |
T |
|
| Q |
132 |
tgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacatcacacgaaaga |
231 |
Q |
| |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || | ||||||||||||| |||||| |||||| | ||||| |
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| T |
7833024 |
tgaactagtattgatgtaatgtgattctttgaatgacaaacatcattgaaccatctcccaaatgtgatcaaaccgaagaaaaataacatcaagctaaaga |
7833123 |
T |
|
| Q |
232 |
agttagctttgcttcttctcatgctccatatattg |
266 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||| |||| |
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| T |
7833124 |
agttaggtttccttgttctcatgctccataaattg |
7833158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 291 - 448
Target Start/End: Complemental strand, 7833747 - 7833590
Alignment:
| Q |
291 |
acaatttccttcctgagtggcggttcagctctaccaagcctcattgcaacaatattcattgcttggtaccttaagttgtcaatttgattaactgcgaaag |
390 |
Q |
| |
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|||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7833747 |
acaacttccttccaaagtggaggttcagctctacccagcctcattgctacaatattcgttgcttggtaccttaagttgtcaatttgattaactgtgaaag |
7833648 |
T |
|
| Q |
391 |
gttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatgttagc |
448 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7833647 |
gttgtaaataatgcaactttgggagtaaaggttggccatatatatgaaacatgttagc |
7833590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 362 - 467
Target Start/End: Original strand, 7882635 - 7882741
Alignment:
| Q |
362 |
taagttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttgggagt-aaaggttggccataaatatgaaacatgttagctagtgagagtgc |
460 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
7882635 |
taagttgtcaatttgattaactgtgaaaggttgtaaataatgcatctttaggagtgaaaggttggccatagatatgaagaatgttagctagtgagagtgc |
7882734 |
T |
|
| Q |
461 |
agtgaac |
467 |
Q |
| |
|
|||||| |
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|
| T |
7882735 |
tgtgaac |
7882741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 386 - 467
Target Start/End: Original strand, 7913557 - 7913638
Alignment:
| Q |
386 |
gaaaggttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatgttagctagtgagagtgcagtgaac |
467 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| |
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| T |
7913557 |
gaaaggttctaaataatgcatcttttggagtaaaggttggccatacatatgaaaaatgttagctggtgagagtgcagtgaac |
7913638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 7880368 - 7880440
Alignment:
| Q |
24 |
ggttgtctcggacgaaaccgatagttccataagccaatcaagaacatgtagagaaaacatgttggtagtatca |
96 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||| |
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|
| T |
7880368 |
ggttgtctcagacgaaaccgatagttccataagccagtcaagaacatgcagaggaaaaatgttggtagtatca |
7880440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 7880519 - 7880573
Alignment:
| Q |
225 |
cgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatcca |
279 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
7880519 |
cgaaagaagttagcattgcttcttctcatgctcagtatattggaatcaacatcca |
7880573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 448
Target Start/End: Original strand, 7833156 - 7833238
Alignment:
| Q |
366 |
ttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatgttagc |
448 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||||||| |||||||| || ||| ||| | ||| ||||||||||||||||| |
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| T |
7833156 |
ttgtaaatttgattaactgtgaaatgttgtaaataatatatctttggaagcgaagtttgacaatatatatgaaacatgttagc |
7833238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 20 - 467
Target Start/End: Original strand, 8415609 - 8416056
Alignment:
| Q |
20 |
aggtggttgtctcggacgaaaccgatagttccataagccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatc |
119 |
Q |
| |
|
|||||| | ||| |||||||| |||||||||||||| ||||| ||||||||||||||||| || || || ||||||||||||||| | | |||||| |
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|
| T |
8415609 |
aggtggatttcttggacgaaatcgatagttccataaaccaattaagaacatgtagagaaatatagtcggaagaatcaattctggatacaaaatcaatatt |
8415708 |
T |
|
| Q |
120 |
aaaaagaggatgtgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggaca |
219 |
Q |
| |
|
| || || ||||| ||||||| ||||| | |||||||||| | ||||| | ||||||||| | || ||||||||| | || ||||| |||| |
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|
| T |
8415709 |
aggaatagaatgtgtactagtaccgatgtgaccggattcttccaattgcaaacttggttgaaccatttccccattgtgatcgcgctagaaaaaagcgaca |
8415808 |
T |
|
| Q |
220 |
tcacacgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagc |
319 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||| | |||||||||||| || ||||| || || ||||| || |
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|
| T |
8415809 |
tcatgcgaaagaagttggctttgcttcttctcatgctccacatatgtgaatcaacatctaacatgtactcaactgcctctttcctaagaggaggttcggc |
8415908 |
T |
|
| Q |
320 |
tctaccaagcctcattgcaacaatattcattgcttggtaccttaagttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttgggagtaaa |
419 |
Q |
| |
|
|||||| |||||||| || || |||||||| |||||||||||||| || |||| ||||||||||| ||| || |||||||||||||||||| || ||| |
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|
| T |
8415909 |
tctacctagcctcatagctacgatattcatcgcttggtaccttaaattttcaacttgattaactgtgaagggacttaaataatgcatctttggaagcaaa |
8416008 |
T |
|
| Q |
420 |
ggttggccataaatatgaaacatgttagctagtgagagtgcagtgaac |
467 |
Q |
| |
|
||||| |||||||||| || ||||||||||| ||| || | ||||||| |
|
|
| T |
8416009 |
ggttgtccataaatataaaccatgttagctattgaaagagtagtgaac |
8416056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 355
Target Start/End: Original strand, 3186 - 3304
Alignment:
| Q |
237 |
gctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagctctaccaagcctcattg |
336 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| ||||| |||||||||||||| | ||| ||||| || || ||||| ||||| || ||||||| || |
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|
| T |
3186 |
gctttgcttcttcttaaactccatatatgtgaatccacatcaagcatgtactcaactacttctttcctaagaggtggttctgctcttcctagcctcactg |
3285 |
T |
|
| Q |
337 |
caacaatattcattgcttg |
355 |
Q |
| |
|
| || |||||||| ||||| |
|
|
| T |
3286 |
ctacgatattcatagcttg |
3304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 3015 - 3093
Alignment:
| Q |
66 |
aacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatcaaaaagaggatgtgaactagtattg |
144 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||| |||| || || ||||| || | ||||||||||||| |
|
|
| T |
3015 |
aacatgtagagaaaaattgttggtaggatcaattctggataacatattaagatgaaaaaaagaacatgaactagtattg |
3093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 13227 - 13291
Alignment:
| Q |
228 |
aagaagttagctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaac |
292 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||| || | |||| ||||||| ||||| |||||||| |
|
|
| T |
13227 |
aagaaattagccttgcttcttctcatactccacatgtgggaaccaacatcaagcatatactcaac |
13291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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