View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12672_high_1 (Length: 357)
Name: NF12672_high_1
Description: NF12672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12672_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 24 - 348
Target Start/End: Original strand, 44026932 - 44027263
Alignment:
| Q |
24 |
gggcctagtgagcaaccat----ctaatgtagatggtttagttaacgagggtg---ttccctatcttcagctttgacaatttaatgcgttcttaaacaac |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44026932 |
gggcctagtgagcaaccatatatctaatgtagatggtttagttaatgagggtgcagttccctatcttcagctttgacaatttaatgctttcttaaacaac |
44027031 |
T |
|
| Q |
117 |
tctgtcagcattcaacttcacttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027032 |
tctgtcagcattcaacttcacttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgt |
44027131 |
T |
|
| Q |
217 |
ctcccttgtatgttactcaacgctcttttatatcactttataacaaccaattttcttctcaaattcgagctaagctaaaagttttacattaaatgaaaaa |
316 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027132 |
ctcccttctatgttactcaacgctcttttatatcactttataacaaccaattttcttctcaaattcgagctaagctaaaagttttacattaaatgaaaaa |
44027231 |
T |
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| Q |
317 |
gtatggcatcagagttttgaacattcctatgc |
348 |
Q |
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|||||||||| ||||| ||||||||||||||| |
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| T |
44027232 |
gtatggcatcggagttctgaacattcctatgc |
44027263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 24 - 348
Target Start/End: Complemental strand, 43294029 - 43293698
Alignment:
| Q |
24 |
gggcctagtgagcaaccat----ctaatgtagatggtttagttaacgagggtg---ttccctatcttcagctttgacaatttaatgcgttcttaaacaac |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43294029 |
gggcctagtgagcaaccatatatctaatgtagatggtttagttaatgagggtgcagttccctatcttcagctttgacaatttaatgctttcttaaacaac |
43293930 |
T |
|
| Q |
117 |
tctgtcagcattcaacttcacttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293929 |
tctgtcagcattcaacttcacttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgt |
43293830 |
T |
|
| Q |
217 |
ctcccttgtatgttactcaacgctcttttatatcactttataacaaccaattttcttctcaaattcgagctaagctaaaagttttacattaaatgaaaaa |
316 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293829 |
ctcccttctatgttactcaacgctcttttatatcactttataacaaccaattttcttctcaaattcgagctaagctaaaagttttacattaaatgaaaaa |
43293730 |
T |
|
| Q |
317 |
gtatggcatcagagttttgaacattcctatgc |
348 |
Q |
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|||||||||| ||||| ||||||||||||||| |
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| T |
43293729 |
gtatggcatcggagttctgaacattcctatgc |
43293698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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