View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12672_high_8 (Length: 238)
Name: NF12672_high_8
Description: NF12672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12672_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 43239779 - 43239987
Alignment:
| Q |
30 |
tagtgatctatataaaccaaaatcacgtgtttgatgtgcatagacatacaaaattaagatttcgtggcgagattaagatgaaattgtttcctaaaaacac |
129 |
Q |
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| T |
43239779 |
tagtgatctatataaaccaaaatcatgtgtttgatgtgcatagacatacaaaattaagatttcgtggcgagattaagatgaaattgtttcctaaaaacac |
43239878 |
T |
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| Q |
130 |
gcatttgtctttaaactaattaacttgnnnnnnncttaatttcaaacttcaatcatatgttcctcttaattgaaactctgaaagaaattcttaatgaaat |
229 |
Q |
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| T |
43239879 |
gcctttgtctttaaactaattaacttgtttttttcttaacttcaaacttcaatcatatgttcctcttaattgaaactctgaaagagattcttaatgaaat |
43239978 |
T |
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| Q |
230 |
tattactcc |
238 |
Q |
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| T |
43239979 |
tattactcc |
43239987 |
T |
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