View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12672_low_12 (Length: 226)
Name: NF12672_low_12
Description: NF12672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12672_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43240338 - 43240112
Alignment:
| Q |
1 |
gctatgtatgctagggtgacaacagctgaagctcctagccaatttctcatagaagataatgttggaatggagaaggaaaaaatgaagtatgcagctcctg |
100 |
Q |
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| T |
43240338 |
gctatgtatgctagagtgacaacagctgaagctcctagccaatttctcatagaagataatgttggaatggagaaggaaaaaatgaagtatgctgctcctg |
43240239 |
T |
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| Q |
101 |
ttactactatgtagtattgaagtctccaaggagaatcactaaattctgcgttgatttcctatcacaaaaaacaaccac-tttatataaaaaattactcat |
199 |
Q |
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| T |
43240238 |
ttactactatgtagtattgaagtctccaaggagaatcactaaattctgcgttgatttcctatcacaaaaaacaaccacttttatataaaaaattactcat |
43240139 |
T |
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| Q |
200 |
ttaattaattgatccaatcatttatat |
226 |
Q |
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||||||||||||||||||||||||||| |
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| T |
43240138 |
ttaattaattgatccaatcatttatat |
43240112 |
T |
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