View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12672_low_3 (Length: 336)
Name: NF12672_low_3
Description: NF12672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12672_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 327
Target Start/End: Original strand, 29104280 - 29104591
Alignment:
| Q |
4 |
ttgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaatcgaaaaatcttctccggctttgatttctt |
103 |
Q |
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| T |
29104280 |
ttgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaagcgaaaaatcttctccggctttgatttctt |
29104379 |
T |
|
| Q |
104 |
tgtttttgcaacgacttcaggaaatctgaaaagcaaaatagctccattcttagaaatctcagcaaaacaagcttctttgatggaattattgatggaattc |
203 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
29104380 |
tgtttttgcaacgacttcaggaaatcttaaaagtaaaatagctccatccttagaaatctcagcaaaacaagcttct------------ttgatggaattc |
29104467 |
T |
|
| Q |
204 |
gaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcttctaaccaactgttgattttcatctcaagaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29104468 |
gaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcctctaaccaactgttgattttcatctcaagaa |
29104567 |
T |
|
| Q |
304 |
cttcccagtccatcttattcatct |
327 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
29104568 |
cttcccagtccatcttattcatct |
29104591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 29090019 - 29090326
Alignment:
| Q |
4 |
ttgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaatcgaaaaatcttctccggctttgatttctt |
103 |
Q |
| |
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||||||| || |||||||| ||||||| |||||| ||||||| ||||||||| || |||||||||||||| || |||||||||||||| | ||||||| |
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| T |
29090019 |
ttgaattgaaagagaaaatcgattcaacctccggtaacaacatggtgattgtggcatacatatcaagcaaacggaaaatcttctccggtgtccatttctt |
29090118 |
T |
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| Q |
104 |
tgtttttgcaacgacttcaggaaatctgaaaagcaaaatagctccat-tcttagaaatctcagcaaaacaagcttctttgatggaattattgatggaatt |
202 |
Q |
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|||||| ||||||| ||||||||||| || || | | ||||||||| |||| ||||| ||| |||||||||||||| |||| |||||| |
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| T |
29090119 |
tgttttcgcaacgaattcaggaaatcgtaagagaagagtagctccatctctt-gaaatttcaccaaaacaagcttctctgat------------ggaatt |
29090205 |
T |
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| Q |
203 |
cgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcttctaaccaactgttgattttcatctcaaga |
302 |
Q |
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||||||||| ||||| ||||||||||| |||||||| | ||||| || ||||||||||||||||| || |||||||||| ||||||||||||||||||| |
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| T |
29090206 |
cgaagcgaaaattcgttcgcagaggtttctctctccagaaaagagtgttctcactgagatcttaactgcctctaaccaacagttgattttcatctcaaga |
29090305 |
T |
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| Q |
303 |
acttcccagtccatcttattc |
323 |
Q |
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||||||||||||||||||||| |
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| T |
29090306 |
acttcccagtccatcttattc |
29090326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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