View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12672_low_4 (Length: 319)
Name: NF12672_low_4
Description: NF12672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12672_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 39990636 - 39990931
Alignment:
| Q |
8 |
gagcagagaataagagggataaagagcaaaaactagttctcaccctcataagcattggtccattatctgatggctgaagaatgtagtaacaatgataagg |
107 |
Q |
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| T |
39990636 |
gagcagagaataagagggataaagagcaaaaactagttctcaccctcataagcattggtccattatctgatggctgaagaatgtagtaacaatgataagg |
39990735 |
T |
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| Q |
108 |
agcctctgtcattgtttctaaatcacaatttgaagaacatatcaaaccctggtccattgaatgtagaatgctagaaaggccttgaaaaactgtcaaatag |
207 |
Q |
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| T |
39990736 |
agcctctgtcattgtttctaaatcacaatttgaagaacatatcaaaccctggtccattgaatgtagaatgctagaaaggccttgaaaaactgtcaaatag |
39990835 |
T |
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| Q |
208 |
tagtcatgttagg-aaaaagataaactttgtgaagaatttgaccaatatacattgaacagcaacaatgaaggactaatgaaaatgacacagataat |
302 |
Q |
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| T |
39990836 |
tagtcatgttaggaaaaaagataaactttgtgaagaatttgaccaatatacattgaacagcaacaattaaggactaatgacaatgacacagataat |
39990931 |
T |
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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 22693785 - 22693697
Alignment:
| Q |
108 |
agcctctgtcattgtttctaaatcacaatttgaagaacatatcaaaccctggtccattgaatgtagaatgctagaaaggccttgaaaaa |
196 |
Q |
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||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
22693785 |
agcctctgtcactgtttctaaatcacaacttgaagaacacatcaaaccttggtccattgaatgtagaacgctagaaaggccttgaaaaa |
22693697 |
T |
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