View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12672_low_8 (Length: 269)
Name: NF12672_low_8
Description: NF12672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12672_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 39559216 - 39558954
Alignment:
| Q |
1 |
aactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagat |
100 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559216 |
aactcctctagaatgggacaaacagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagat |
39559117 |
T |
|
| Q |
101 |
cgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggattt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559116 |
cgacgaaaggaacttcttcattcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggattt |
39559017 |
T |
|
| Q |
201 |
atggcagagatcgatgcttaggttttcaactcctcgtgtcgtaatgattaaatcctttgcttc |
263 |
Q |
| |
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| T |
39559016 |
atggcagagatcgatgcttaggttttcaactcctcgtgttgtaatgattaaatcctttgcttc |
39558954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 50814552 - 50814322
Alignment:
| Q |
1 |
aactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagat |
100 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||| | || |||| | ||||| || ||||||||| ||||||||| |||||||| |||||||||| |
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| T |
50814552 |
aacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtgagggaagat |
50814453 |
T |
|
| Q |
101 |
cgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggattt |
200 |
Q |
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| T |
50814452 |
caacgaaaggaacttc---gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaag |
50814356 |
T |
|
| Q |
201 |
atggcagagatcgatgcttaggttttcaactcct |
234 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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| T |
50814355 |
atggcagagatttatgcttaggttttcaactcct |
50814322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 50861312 - 50861542
Alignment:
| Q |
1 |
aactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagat |
100 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||| | || |||| | ||||| || ||||||||| ||||||||| |||||||| |||||||||| |
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| T |
50861312 |
aacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtgagggaagat |
50861411 |
T |
|
| Q |
101 |
cgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggattt |
200 |
Q |
| |
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| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||| | |
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| T |
50861412 |
caacgaaaggaacttc---gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaag |
50861508 |
T |
|
| Q |
201 |
atggcagagatcgatgcttaggttttcaactcct |
234 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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| T |
50861509 |
atggcagagatttatgcttaggttttcaactcct |
50861542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 39558952 - 39558718
Alignment:
| Q |
1 |
aactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagat |
100 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||| ||| || ||| ||| || | ||| |||||||| ||||||||| ||||||||| ||||||||| |
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| T |
39558952 |
aactcctctagaatgggacagccggatagaagtttcatgatgtactcataatgtgggaaaccgacagattctaagtgaaggacttttagcaagggaagat |
39558853 |
T |
|
| Q |
101 |
cgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggattt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| |||| ||||| | || | | ||| || |
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| T |
39558852 |
taacgaaaggaa---cttcgttcaatgttacactcttcaatttgaggactgtcaaggttttggtagttagaaccaaagcaggcagtatgatatcggagtt |
39558756 |
T |
|
| Q |
201 |
a---tggcagagatcgatgcttaggttttcaactcctc |
235 |
Q |
| |
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| | |||||||| ||||||||||||||||||||||| |
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| T |
39558755 |
atacttgcagagattgatgcttaggttttcaactcctc |
39558718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 50814825 - 50814636
Alignment:
| Q |
1 |
aactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || ||| || | |||||||| |||||||||||| ||||||||| ||||||||| ||||||||| |
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|
| T |
50814825 |
aactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagat |
50814726 |
T |
|
| Q |
101 |
cgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttt |
193 |
Q |
| |
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| |||||||||| ||| ||||||||||| ||||||||||||||| ||||| ||||||| ||||||| | |||||||||| | |||||| |
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| T |
50814725 |
caacgaaaggaa---cttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggttt |
50814636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 50861039 - 50861228
Alignment:
| Q |
1 |
aactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || ||| || | |||||||| |||||||||||| ||||||||| ||||||||| ||||||||| |
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|
| T |
50861039 |
aactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagat |
50861138 |
T |
|
| Q |
101 |
cgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttt |
193 |
Q |
| |
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| |||||||||| ||| ||||||||||| ||||||||||||||| ||||| ||||||| ||||||| | |||||||||| | |||||| |
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| T |
50861139 |
caacgaaaggaa---cttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggttt |
50861228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 49857451 - 49857591
Alignment:
| Q |
9 |
tagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaa |
108 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||| || |||||||| ||| ||| |||| |||||||| | ||| ||||| |||||||| || ||| |
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| T |
49857451 |
tagaatgggacatccagataaaagttttctgatatgtccataatatgtgaaacagacggattccaagtgaaggattttgagcgacggaagatcaaccaaa |
49857550 |
T |
|
| Q |
109 |
ggaacttcttcgttcaatgttaccctcttcaatttgaggac |
149 |
Q |
| |
|
||| |||| | ||||||||||| |||||||||||||||||| |
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|
| T |
49857551 |
ggaccttcatagttcaatgttatcctcttcaatttgaggac |
49857591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 49868709 - 49868793
Alignment:
| Q |
151 |
gtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctc |
235 |
Q |
| |
|
|||||||||||| |||| ||||| |||| ||||||||| |||||||| | | |||||||||||||| ||||||||| |||||||| |
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| T |
49868709 |
gtcaaggttttggtagtaagaacgaaagtaggcaatgtagttttggagtaaaggcagagatcgatggttaggtttttaactcctc |
49868793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 49760622 - 49760738
Alignment:
| Q |
30 |
aagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgtt |
129 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||| || |||||||| |||| ||||| |||||||| ||| | |||| || | |||||||| |
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|
| T |
49760622 |
aagtttcaagatatattcataatatgtgtaagtgacaagttccaagtgaagggctttgagcgaaggaagatcaacgtacggaa---ctccagtcaatgtt |
49760718 |
T |
|
| Q |
130 |
accctcttcaatttgaggac |
149 |
Q |
| |
|
| |||||||||||||||||| |
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|
| T |
49760719 |
atcctcttcaatttgaggac |
49760738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 31211027 - 31210971
Alignment:
| Q |
126 |
tgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaagg |
182 |
Q |
| |
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|||||| |||||||||||||||| |||||||||||| || ||||||| |||||||| |
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|
| T |
31211027 |
tgttacgctcttcaatttgaggaatgtcaaggttttggtatttagaaccaaagaagg |
31210971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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