View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12673_high_10 (Length: 255)

Name: NF12673_high_10
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12673_high_10
NF12673_high_10
[»] chr8 (31 HSPs)
chr8 (1-238)||(21967270-21967507)
chr8 (1-238)||(21979995-21980232)
chr8 (1-238)||(21984978-21985215)
chr8 (1-238)||(11251354-11251590)
chr8 (1-238)||(21329209-21329446)
chr8 (1-240)||(22000013-22000251)
chr8 (1-199)||(44493428-44493625)
chr8 (1-146)||(34950728-34950873)
chr8 (6-177)||(22381495-22381667)
chr8 (58-220)||(20501821-20501981)
chr8 (1-57)||(22005173-22005229)
chr8 (58-170)||(22252933-22253045)
chr8 (61-170)||(17085922-17086030)
chr8 (58-170)||(22525757-22525868)
chr8 (58-170)||(22963188-22963299)
chr8 (132-220)||(24353338-24353424)
chr8 (132-220)||(37116662-37116748)
chr8 (133-172)||(20498878-20498917)
chr8 (88-170)||(19699505-19699587)
chr8 (133-220)||(22419136-22419222)
chr8 (75-170)||(23947624-23947719)
chr8 (132-170)||(17266761-17266799)
chr8 (58-115)||(20533232-20533288)
chr8 (133-170)||(39834146-39834183)
chr8 (91-163)||(9601-9673)
chr8 (55-170)||(2418644-2418757)
chr8 (132-172)||(22364976-22365016)
chr8 (134-170)||(31723141-31723177)
chr8 (134-170)||(36727686-36727722)
chr8 (58-122)||(37515946-37516009)
chr8 (134-170)||(45470990-45471026)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-238)||(209106-209343)
[»] scaffold0301 (3 HSPs)
scaffold0301 (1-199)||(11910-12108)
scaffold0301 (1-199)||(15062-15260)
scaffold0301 (1-199)||(16310-16508)
[»] scaffold0098 (2 HSPs)
scaffold0098 (1-238)||(24395-24629)
scaffold0098 (1-238)||(35265-35499)
[»] chr3 (18 HSPs)
chr3 (1-228)||(16839383-16839609)
chr3 (64-200)||(32402699-32402834)
chr3 (133-220)||(606088-606174)
chr3 (88-170)||(9577893-9577975)
chr3 (88-170)||(12512350-12512432)
chr3 (58-220)||(15207178-15207339)
chr3 (133-170)||(22110120-22110157)
chr3 (132-169)||(43927447-43927484)
chr3 (134-170)||(324550-324586)
chr3 (134-170)||(37250936-37250972)
chr3 (133-200)||(23318456-23318522)
chr3 (88-170)||(14250655-14250737)
chr3 (1-73)||(2248600-2248673)
chr3 (133-170)||(13210097-13210134)
chr3 (2-73)||(8928295-8928367)
chr3 (134-170)||(11886203-11886239)
chr3 (134-170)||(14572903-14572939)
chr3 (134-170)||(53070468-53070504)
[»] chr7 (29 HSPs)
chr7 (1-199)||(13892775-13892973)
chr7 (58-220)||(14044989-14045148)
chr7 (58-220)||(14355019-14355178)
chr7 (58-170)||(9177434-9177545)
chr7 (88-170)||(36705200-36705282)
chr7 (88-200)||(16996492-16996602)
chr7 (70-170)||(11768687-11768786)
chr7 (58-170)||(14036439-14036550)
chr7 (58-170)||(14346469-14346580)
chr7 (134-170)||(2279888-2279924)
chr7 (134-170)||(12255561-12255597)
chr7 (134-170)||(15113259-15113295)
chr7 (134-170)||(16056643-16056679)
chr7 (90-220)||(130535-130663)
chr7 (130-220)||(20219911-20219999)
chr7 (88-170)||(42462220-42462302)
chr7 (133-170)||(68060-68097)
chr7 (133-170)||(9389465-9389502)
chr7 (134-170)||(810899-810935)
chr7 (134-170)||(4071209-4071245)
chr7 (58-122)||(9033162-9033225)
chr7 (134-170)||(12901644-12901680)
chr7 (134-170)||(15008267-15008303)
chr7 (134-170)||(15096217-15096253)
chr7 (134-170)||(15116796-15116832)
chr7 (58-102)||(16091998-16092042)
chr7 (134-170)||(16219486-16219522)
chr7 (58-122)||(17017284-17017347)
chr7 (134-170)||(22073231-22073267)
[»] scaffold0001 (2 HSPs)
scaffold0001 (1-238)||(162801-163038)
scaffold0001 (11-68)||(152845-152903)
[»] chr6 (22 HSPs)
chr6 (1-238)||(9622120-9622356)
chr6 (2-238)||(25738563-25738800)
chr6 (58-170)||(20077942-20078054)
chr6 (58-220)||(20224184-20224344)
chr6 (58-220)||(22118168-22118328)
chr6 (133-219)||(35008464-35008549)
chr6 (58-170)||(18453423-18453535)
chr6 (133-200)||(17106047-17106113)
chr6 (139-217)||(18177394-18177471)
chr6 (139-217)||(18204400-18204477)
chr6 (132-219)||(23077045-23077131)
chr6 (142-200)||(18199155-18199212)
chr6 (88-170)||(24550813-24550895)
chr6 (133-170)||(19668687-19668724)
chr6 (134-170)||(25644637-25644673)
chr6 (58-220)||(18696728-18696888)
chr6 (133-170)||(4185593-4185630)
chr6 (133-170)||(4667983-4668020)
chr6 (133-170)||(9098294-9098331)
chr6 (134-198)||(17229658-17229720)
chr6 (133-170)||(20109455-20109492)
chr6 (133-170)||(22080507-22080544)
[»] scaffold0016 (1 HSPs)
scaffold0016 (95-238)||(172637-172780)
[»] chr5 (17 HSPs)
chr5 (109-220)||(25744011-25744122)
chr5 (133-220)||(27988648-27988736)
chr5 (133-220)||(15796736-15796821)
chr5 (58-170)||(23470043-23470155)
chr5 (58-170)||(21327983-21328094)
chr5 (134-170)||(21501924-21501960)
chr5 (134-170)||(22144365-22144401)
chr5 (58-170)||(25574238-25574349)
chr5 (135-170)||(21329265-21329300)
chr5 (132-170)||(22177988-22178026)
chr5 (133-170)||(5888945-5888982)
chr5 (133-170)||(21809349-21809386)
chr5 (133-170)||(22959303-22959340)
chr5 (134-170)||(20026709-20026745)
chr5 (134-170)||(21618573-21618609)
chr5 (58-102)||(26740482-26740526)
chr5 (134-170)||(36154598-36154634)
[»] chr1 (14 HSPs)
chr1 (109-202)||(16381475-16381568)
chr1 (6-170)||(20958296-20958460)
chr1 (58-219)||(22124526-22124685)
chr1 (58-220)||(27652941-27653102)
chr1 (58-170)||(52940646-52940757)
chr1 (134-170)||(26065255-26065291)
chr1 (132-168)||(50686927-50686963)
chr1 (132-170)||(16368055-16368093)
chr1 (136-170)||(21861338-21861372)
chr1 (88-170)||(45754897-45754979)
chr1 (1-73)||(20031520-20031593)
chr1 (133-170)||(20637164-20637201)
chr1 (134-167)||(35260852-35260885)
chr1 (134-170)||(12271863-12271899)
[»] scaffold0293 (1 HSPs)
scaffold0293 (58-220)||(17743-17903)
[»] chr2 (16 HSPs)
chr2 (58-220)||(26392622-26392783)
chr2 (61-165)||(21242926-21243029)
chr2 (58-170)||(34137181-34137293)
chr2 (88-170)||(25045443-25045524)
chr2 (132-220)||(19672140-19672227)
chr2 (132-220)||(25109203-25109289)
chr2 (132-170)||(23791589-23791627)
chr2 (133-170)||(7501-7538)
chr2 (133-170)||(18786671-18786708)
chr2 (58-115)||(20520016-20520072)
chr2 (133-170)||(31756231-31756268)
chr2 (58-118)||(18546765-18546824)
chr2 (138-170)||(22412904-22412936)
chr2 (134-170)||(22459330-22459366)
chr2 (134-170)||(23207594-23207630)
chr2 (134-170)||(23708388-23708424)
[»] chr4 (19 HSPs)
chr4 (60-203)||(40907314-40907456)
chr4 (55-203)||(26050212-26050358)
chr4 (58-198)||(14852617-14852755)
chr4 (88-170)||(32466840-32466922)
chr4 (134-170)||(13619-13655)
chr4 (134-170)||(52242963-52242999)
chr4 (88-170)||(19738517-19738599)
chr4 (88-170)||(27996182-27996264)
chr4 (132-170)||(53081919-53081957)
chr4 (133-170)||(8846688-8846725)
chr4 (133-170)||(12287978-12288015)
chr4 (133-170)||(15099664-15099701)
chr4 (58-115)||(17333521-17333577)
chr4 (58-115)||(50160404-50160461)
chr4 (133-169)||(15190631-15190667)
chr4 (134-170)||(15464699-15464735)
chr4 (134-170)||(21815072-21815108)
chr4 (134-170)||(21815401-21815437)
chr4 (134-170)||(21818494-21818530)
[»] scaffold0282 (1 HSPs)
scaffold0282 (58-170)||(17935-18047)
[»] scaffold0379 (2 HSPs)
scaffold0379 (88-170)||(4386-4468)
scaffold0379 (88-172)||(14378-14462)
[»] scaffold0108 (1 HSPs)
scaffold0108 (61-167)||(3420-3526)
[»] scaffold1419 (1 HSPs)
scaffold1419 (133-220)||(337-423)
[»] scaffold0321 (1 HSPs)
scaffold0321 (88-170)||(534-616)
[»] scaffold0074 (1 HSPs)
scaffold0074 (6-170)||(8368-8533)
[»] scaffold0750 (1 HSPs)
scaffold0750 (60-220)||(3838-3996)
[»] scaffold0338 (1 HSPs)
scaffold0338 (70-170)||(11357-11457)
[»] scaffold0151 (1 HSPs)
scaffold0151 (88-172)||(30456-30540)
[»] scaffold0914 (1 HSPs)
scaffold0914 (133-220)||(2019-2105)
[»] scaffold0022 (1 HSPs)
scaffold0022 (133-220)||(128691-128776)
[»] scaffold0010 (2 HSPs)
scaffold0010 (6-169)||(835-998)
scaffold0010 (134-170)||(60483-60519)
[»] scaffold0006 (2 HSPs)
scaffold0006 (132-219)||(97319-97405)
scaffold0006 (132-219)||(106597-106683)
[»] scaffold0409 (2 HSPs)
scaffold0409 (88-170)||(665-747)
scaffold0409 (88-170)||(8920-9002)
[»] scaffold0139 (1 HSPs)
scaffold0139 (132-170)||(38632-38670)
[»] scaffold0003 (1 HSPs)
scaffold0003 (88-177)||(95724-95813)
[»] scaffold0621 (1 HSPs)
scaffold0621 (134-170)||(8785-8821)
[»] scaffold0507 (1 HSPs)
scaffold0507 (134-170)||(7827-7863)
[»] scaffold0165 (1 HSPs)
scaffold0165 (134-170)||(27488-27524)
[»] scaffold0078 (1 HSPs)
scaffold0078 (134-170)||(10843-10879)
[»] scaffold0075 (1 HSPs)
scaffold0075 (134-170)||(53317-53353)
[»] scaffold0021 (2 HSPs)
scaffold0021 (134-170)||(136136-136172)
scaffold0021 (134-170)||(144844-144880)
[»] scaffold0076 (1 HSPs)
scaffold0076 (58-105)||(24430-24477)
[»] scaffold0028 (1 HSPs)
scaffold0028 (88-163)||(3627-3702)
[»] scaffold1351 (1 HSPs)
scaffold1351 (132-170)||(320-358)
[»] scaffold0628 (3 HSPs)
scaffold0628 (88-170)||(4061-4143)
scaffold0628 (88-170)||(8621-8703)
scaffold0628 (134-170)||(2572-2608)
[»] scaffold0138 (2 HSPs)
scaffold0138 (132-170)||(18006-18044)
scaffold0138 (133-170)||(13254-13291)
[»] scaffold0077 (1 HSPs)
scaffold0077 (58-220)||(55405-55564)
[»] scaffold0004 (1 HSPs)
scaffold0004 (88-170)||(109603-109685)
[»] scaffold0475 (1 HSPs)
scaffold0475 (133-170)||(9390-9427)
[»] scaffold0413 (2 HSPs)
scaffold0413 (133-170)||(12883-12920)
scaffold0413 (134-170)||(15385-15421)
[»] scaffold0125 (1 HSPs)
scaffold0125 (133-170)||(45560-45597)
[»] scaffold0123 (1 HSPs)
scaffold0123 (58-115)||(778-834)
[»] scaffold0034 (1 HSPs)
scaffold0034 (133-170)||(32850-32887)
[»] scaffold0020 (1 HSPs)
scaffold0020 (133-170)||(15600-15637)
[»] scaffold0002 (1 HSPs)
scaffold0002 (133-170)||(397979-398016)
[»] scaffold0737 (1 HSPs)
scaffold0737 (138-170)||(1566-1598)
[»] scaffold0555 (1 HSPs)
scaffold0555 (134-170)||(10310-10346)
[»] scaffold0357 (1 HSPs)
scaffold0357 (134-170)||(15868-15904)
[»] scaffold0218 (1 HSPs)
scaffold0218 (134-170)||(7845-7881)
[»] scaffold0169 (1 HSPs)
scaffold0169 (58-122)||(29240-29303)
[»] scaffold0107 (1 HSPs)
scaffold0107 (58-102)||(9920-9964)
[»] scaffold0040 (1 HSPs)
scaffold0040 (134-170)||(103407-103443)
[»] scaffold0005 (1 HSPs)
scaffold0005 (134-170)||(267967-268003)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 21967507 - 21967270
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||    
T  21967507 ccatcttatatcagactcactgaacatcaacaatattttaataaatctttatcttaacccaaggatcatctcatagcatctcgtgcggcaaagatcgcaa 21967408  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||    
T  21967407 aaaccctaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttcacaaaaggtggctgttcgctttggcgaac 21967308  T
Q  201 cagctactcgccttggcgaataacatcatggtgctctc 238  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  21967307 cagctactcgccttggcgaataaaatcagggtgctctc 21967270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 21980232 - 21979995
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  21980232 ccatcttatatcagactcactgaacatcaacaatattttaataattctttatcttaacccaaggatcatctcatagtatctcgtgcgacaaagatcgcaa 21980133  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    |||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||    
T  21980132 aaaccctaaacaatgttgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttcacaaaagttggctgttcgctttggcgaac 21980033  T
Q  201 cagctactcgccttggcgaataacatcatggtgctctc 238  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  21980032 cagctactcgccttggcgaataaaatcagggtgctctc 21979995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 21985215 - 21984978
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  21985215 ccatcttatatcagactcactgaacatcaacaatattttaataattctttatcttaacccaaggatcatctcatagtatctcgtgcgacaaagatcgcaa 21985116  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||    
T  21985115 aaaccctaaacaaggttgtctgacattcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttcacaaaagttggctgttcgctttggcgaac 21985016  T
Q  201 cagctactcgccttggcgaataacatcatggtgctctc 238  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  21985015 cagctactcgccttggcgaataaaatcagggtgctctc 21984978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11251590 - 11251354
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||| ||||    
T  11251590 ccatcttatgtcagactcactgaacatcaacaatattttaataaatctttatcttaacccaaggatcatctcatggcatcacgtgcgacaaagatagcaa 11251491  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||||    
T  11251490 aa-ccctaaacaaggctgtctgacattcaaaggctcgcgaggcgagcgcctctacttgctatggcgagttcacaaaagttggctgttcgcctttgcgaac 11251392  T
Q  201 cagctactcgccttggcgaataacatcatggtgctctc 238  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  11251391 cagctactcgccttggcgaataaaatcagggtgctctc 11251354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 21329209 - 21329446
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| |||    
T  21329209 ccatcttatatcagactcactgaacatcaacagtattttaataaatctttatcttaacccaaggatcatctcataacatctcgtgcgacaaagatcacaa 21329308  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  21329309 aaaccctaaacaaggctgtctgacactcaaaggctcgcgaggcaagcgcctctactcgctatggcgagttcacaaaagttagttgttcgccttggcgaac 21329408  T
Q  201 cagctactcgccttggcgaataacatcatggtgctctc 238  Q
     ||| |||||||||||||||||| ||||  ||||||||    
T  21329409 aagcaactcgccttggcgaataaaatcagcgtgctctc 21329446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 22000251 - 22000013
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||||||||||  ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||  ||| | |||||||||||    
T  22000251 ccatcttatatcagactcaccgaacattaaaaatattttaataaatctttatcttaacccaaggatcatctcatagcatcttgtgcgaaaaagatcgcaa 22000152  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    |||||| || |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||||||    
T  22000151 aaaccctaa-caagactgtctgacactcaaaggctcgtgaggcgagcgcctctactcgctatggcgagttcacaaaagttggctattcgctttggcgaac 22000053  T
Q  201 cagctactcgccttggcgaataacatcatggtgctctctg 240  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  22000052 cagctactcgccttggcgaataaaatcagggtgctctctg 22000013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 44493625 - 44493428
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    |||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||| ||||    
T  44493625 ccatcttatgtcagacccactgaacatcaacaatattttaataaatctttatcttaacccaaggatcatctcatggcatcacgtgcgacaaagatagcaa 44493526  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaa 199  Q
    || ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44493525 aa-ccctaaacaaggttgtctgacattcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttcacaaaagttggttgttcgccttggcgaa 44493428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 34950728 - 34950873
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    |||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||| ||| |||| ||||||||    
T  34950728 ccatcttacgtcagactcactgaacatcaacaatattttaataaatatttatcttaacccaagtatcgtctcatagcatctcgtgcgacaaggatcgcaa 34950827  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgag 146  Q
    |||||| |||||||||| || ||| ||||||| |||||||||||||    
T  34950828 aaaccctaaacaaggctatcagactctcaaagactcgcgaggcgag 34950873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 22381667 - 22381495
Alignment:
Q  6 ttatgtcagactcactaaacatcaacgatattttaataaatctttat-cttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaac 104  Q
    |||||||||||||||| |||||| || ||||| |||| || ||  || | || ||||||||| | | |||| |||||  ||| ||||||||||||| |||    
T  22381667 ttatgtcagactcactgaacatcgacaatattataatcaacctcgattcctaccccaaggataaacccataacatcttgtgcgacaaagatcgcaagaac 22381568  T
Q  105 ccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaa 177  Q
    || ||||||||||||||||||||     | |||||||||||||  ||||||||||||||||||||||| ||||    
T  22381567 cctaaacaaggctgtctgacactgtgcagttcgcgaggcgagccactctactcgctatggcgagtttagaaaa 22381495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 20501981 - 20501821
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||| |||||||||| | || | ||| |||| |||||||| ||||| |||||||||||| |||||||     |||||||||||||||  ||||||||    
T  20501981 cccaagggtcatctcataacctcacgtgcgacaaggatcgcaagaaccctaaacaaggctgtttgacactgtgcagctcgcgaggcgagccactctactc 20501882  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||||| | ||||   ||  | |||||||||||||| |||||||| ||||||||||    
T  20501881 gctatggcgagttcagaaaa--aggcagctcgccttggcgaacaagctactcaccttggcgaa 20501821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22005229 - 22005173
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaa 57  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  22005229 ccatcttatatcagactcactgaacatcaacaatattttaataaatctttatcttaa 22005173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 22253045 - 22252933
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||| ||| |||||| |||| | ||| ||||||||||||| ||||| |||| |||||||||| |||||    |||||||||||||||  || |||||    
T  22253045 cccaagggtcaactcataacatcacgtgcgacaaagatcgcaagaaccctaaacgaggctgtctggcactctgtcgctcgcgaggcgagccactatactc 22252946  T
Q  158 gctatggcgagtt 170  Q
    |||||||||||||    
T  22252945 gctatggcgagtt 22252933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 17086030 - 17085922
Alignment:
Q  61 aaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgct 160  Q
    |||| ||| |||||| |||||| ||| ||||||||||||||| | | |||||||||||||||||| |     |||||||||||||||  |||||||||||    
T  17086030 aagggtcaactcataacatctcgtgcgacaaagatcgcaaaa-ctctaaacaaggctgtctgacaatgtgcagctcgcgaggcgagccactctactcgct 17085932  T
Q  161 atggcgagtt 170  Q
    ||||||||||    
T  17085931 atggcgagtt 17085922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 22525757 - 22525868
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||| ||||| |||||| |||||| ||| ||||||||||||||| ||| ||||||||||| ||| | ||     |||||||||||||||  ||||||||    
T  22525757 cccaatgatcaactcataacatctcgtgcgacaaagatcgcaaaa-ccctaaacaaggctgactgtctctgtgcagctcgcgaggcgagccactctactc 22525855  T
Q  158 gctatggcgagtt 170  Q
    |||||||||||||    
T  22525856 gctatggcgagtt 22525868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 22963299 - 22963188
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||| ||| |||||| |||||| ||| ||||||||||||||| || ||| ||||| ||||||||| |   | |||||||||||||||  || |||||    
T  22963299 cccaagggtcaactcataacatctcgtgcgacaaagatcgcaaaatcctaaa-caaggttgtctgacaatgtgaagctcgcgaggcgagccactttactc 22963201  T
Q  158 gctatggcgagtt 170  Q
    |||||||||||||    
T  22963200 gctatggcgagtt 22963188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 24353338 - 24353424
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||| ||||||||| |||||||||||||||||||||||||  ||| ||||   |||||||||||||   |||||||||||||||||||    
T  24353338 ggctcacgaggcgagggcctctactcgctatggcgagtttaggaaa-ttgg-cattcgccttggcgagtaagctactcgccttggcgaa 24353424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 37116662 - 37116748
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||||||| ||||||||||||||||||||||| |  ||| ||||   |||||||||||||   |||||||||||||||||||    
T  37116662 ggctcgcgaggcgagagcctctactcgctatggcgagttcaggaaa-ttgg-cattcgccttggcgagtaagctactcgccttggcgaa 37116748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 20498878 - 20498917
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagttta 172  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  20498878 gctcgcgaggcgagagcctctactcgctatggcgagttta 20498917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 19699505 - 19699587
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||| |||||||| || ||| |||| |   |||||| ||||||||  |||||||||||||||||||||    
T  19699505 acaaagatcgcaagaaccctaaacaaggttgactgccactaagtcgctcgcaaggcgagccactctactcgctatggcgagtt 19699587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 22419222 - 22419136
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    |||||||||| ||| ||||||||||||||||||||||| | |||| ||||   ||| |||||||||   |||| ||||||||||||||    
T  22419222 gctcgcgaggtgagggcctctactcgctatggcgagttcagaaaaattgg-cattcaccttggcgactaagctgctcgccttggcgaa 22419136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 23947624 - 23947719
Alignment:
Q  75 agcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||| | ||| ||||||||| ||| ||||| |||||||| || ||| |||| |    ||||||||||||||  |||||||||||||||||||||    
T  23947624 agcatcacgtgcgacaaagatcccaagaaccctaaacaaggttgactgccactgagttactcgcgaggcgagccactctactcgctatggcgagtt 23947719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 17266799 - 17266761
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  17266799 ggctcgcgaggcgagagcctctacttgctatggcgagtt 17266761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 20533288 - 20533232
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaagg 115  Q
    ||||||||||| |||||| |||||| ||| ||||||||||| ||||||| ||||||||    
T  20533288 cccaaggatcaactcataacatctcgtgcgacaaagatcgc-aaaaccctaaacaagg 20533232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 39834146 - 39834183
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  39834146 gctcgcgaggcgagagcctctactcgccatggcgagtt 39834183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 9601 - 9673
Alignment:
Q  91 aagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatg 163  Q
    |||||||||| ||||| |||||||| || ||| |||| |   |||||||||||||||  ||||||||||||||    
T  9601 aagatcgcaagaaccctaaacaaggttgactgccactgagtagctcgcgaggcgagccactctactcgctatg 9673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 2418757 - 2418644
Alignment:
Q  55 taacccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctcta 154  Q
    |||||||||||||| |||| |||  ||| ||| |||||| || ||||| || ||  |||||  ||||| ||||||   | |||||||||||| ||||||     
T  2418757 taacccaaggatcaactcacagcgactcgtgcgacaaaggtcacaaaaccctaa--caaggtagtctgtcactcaggagttcgcgaggcgagggcctctg 2418660  T
Q  155 ctcgctatggcgagtt 170  Q
    ||||||||||||||||    
T  2418659 ctcgctatggcgagtt 2418644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 22364976 - 22365016
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagttta 172  Q
    |||||| |||||||| |||||||||||||||| ||||||||    
T  22364976 ggctcgtgaggcgagagcctctactcgctatgtcgagttta 22365016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 31723177 - 31723141
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||||  |||||||||||||||||||||    
T  31723177 ctcgcgaggcgagccactctactcgctatggcgagtt 31723141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 36727722 - 36727686
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||||  |||||||||||||||||||||    
T  36727722 ctcgcgaggcgagccactctactcgctatggcgagtt 36727686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 37515946 - 37516009
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctg 122  Q
    ||||||||||| || ||| |||||| ||| |||| |||||| ||||||| |||||||||||||||    
T  37515946 cccaaggatcaacttataacatctcgtgcgacaaggatcgc-aaaaccctaaacaaggctgtctg 37516009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 45471026 - 45470990
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||||  |||||||||||||||||||||    
T  45471026 ctcgcgaggcgagccactctactcgctatggcgagtt 45470990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 209106 - 209343
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||    
T  209106 ccatcttatatcagactcactgaacatcaacaatattttaataaatctttatcttaacccaaggatcatctcatagcatctcgtgcggcaaagatcgcaa 209205  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||| |||||||||    
T  209206 aaaccctaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttcacaaaagatggctattcgctttggcgaac 209305  T
Q  201 cagctactcgccttggcgaataacatcatggtgctctc 238  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  209306 cagctactcgccttggcgaataaaatcagggtgctctc 209343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 12108 - 11910
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  12108 ccatcttatatcagactcactgaacatcaacaatattttaataaatctttatcttaacccaaggatcatctcataccatctcgtgcgacaaagatcgcaa 12009  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaa 199  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12008 aaaccctaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttcacaaaagttggttgttcgccttggcgaa 11910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 15260 - 15062
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  15260 ccatcttatatcagactcactgaacatcaacaatattttaataaatctttatcttaacccaaggatcatctcataccatctcgtgcgacaaagatcgcaa 15161  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaa 199  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15160 aaaccctaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttcacaaaagttggttgttcgccttggcgaa 15062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 16508 - 16310
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  16508 ccatcttatatcagactcactgaacatcaacaatattttaataaatctttatcttaacccaaggatcatctcataccatctcgtgcgacaaagatcgcaa 16409  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaa 199  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16408 aaaccctaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttcacaaaagttggttgttcgccttggcgaa 16310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 24395 - 24629
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaaga-tcgca 99  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||| |||||    
T  24395 ccatcttatgtcagactcactgaacatcaacaatattttaataaatctttatcttaacccaaggatcatctcaaagcatcacgtgcgacaaagaatcgca 24494  T
Q  100 aaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaa 199  Q
    ||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||        
T  24495 aaa-ccctaaacgaggctgtctggcactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttcacaaaagttggctgttcgccttgg---t 24590  T
Q  200 ccagctactcgccttggcgaataacatcatggtgctctc 238  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  24591 ccagctacttgccttggcgaataaaatcatggtgctctc 24629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35265 - 35499
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaaga-tcgca 99  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||| |||||    
T  35265 ccatcttatgtcagactcactgaacatcaacaatattttaataaatctttatcttaacccaaggatcatctcaaagcatcacgtgcgacaaagaatcgca 35364  T
Q  100 aaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaa 199  Q
    ||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||        
T  35365 aaa-ccctaaacgaggctgtctggcactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttcacaaaagttggctgttcgccttgg---t 35460  T
Q  200 ccagctactcgccttggcgaataacatcatggtgctctc 238  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  35461 ccagctacttgccttggcgaataaaatcatggtgctctc 35499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 16839609 - 16839383
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  16839609 ccatcttatatcagactcactgaacatcaacagtattttaataaatctttatcttaacccaaggatcatctcataacatctcgtgcgacaaagatcgcaa 16839510  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    || ||| |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||    
T  16839509 aa-ccctaaacaaggttgtctatcactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttcacaaaagttggctgttcgccttggcaaac 16839411  T
Q  201 cagctactcgccttggcgaataacatca 228  Q
     ||| |||||||||||||||||| ||||    
T  16839410 aagcaactcgccttggcgaataaaatca 16839383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 32402834 - 32402699
Alignment:
Q  64 gatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatg 163  Q
    ||||| |||||| |||||| ||| |||||||||||| |||||| || |||||  ||||| | || |   |||||||||||||| | |  |||||||||||    
T  32402834 gatcaactcataacatctcgtgcgacaaagatcgcataaaccctaagcaaggtagtctgtctctaaggagctcgcgaggcgagaggcattactcgctatg 32402735  T
Q  164 gcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    ||||||| | ||||   ||||||||||||||||||||    
T  32402734 gcgagttcagaaaa-aaggttgttcgccttggcgaac 32402699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 606174 - 606088
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||||||  ||||||||||| |||||||||| || ||| |||| | ||||||||||||||| |||  ||| ||||||||||    
T  606174 gctcgcgaggcgaggacctctactcgccatggcgagttcac-aaatttggctattcgccttggcgaacaagcagctcaccttggcgaa 606088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 9577893 - 9577975
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||| ||||||||||||||||||||     |||| | || |||||  |||||||||||||||||||||    
T  9577893 acaaagatcgcaataaccctaaacaaggctgtctgacactgtgcagctcacaagacgagccactctactcgctatggcgagtt 9577975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 12512432 - 12512350
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||| |||||||| || ||| |||| |   |||||||||||||||  |||||||||| ||||||||||    
T  12512432 acaaagatcgcaagaaccctaaacaaggttgactgccactgagtagctcgcgaggcgagccactctactcgcgatggcgagtt 12512350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 15207178 - 15207339
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||| | |||||| ||||||||| |||||| |||||| ||||||||  ||||||   | |   |||||||||||||| | |  | |||    
T  15207178 cccaaggatcaactcacaacatctcgtgcaacaaaaatcgcataaaccctaaacaaggtagtctgattgtaaggagctcgcgaggcgagggacattgctc 15207277  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||||| |  |||  ||||||||||| |||||||   |||| ||||||||||||||    
T  15207278 gctatggcgagttcaggaaa-atggttgttcgctttggcgagtaagctgctcgccttggcgaa 15207339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 22110157 - 22110120
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||||||||||||||    
T  22110157 gctcgcgaggcgagagcctctactcgctatggcgagtt 22110120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 43927447 - 43927484
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagt 169  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  43927447 ggctcgcgaggcgagagcctctactcgctatggcgagt 43927484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 324550 - 324586
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  324550 ctcgcgaggcgagagcctctactcgctatggcgagtt 324586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 37250972 - 37250936
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  37250972 ctcgcgaggcgagagcctctactcgctatggcgagtt 37250936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 23318522 - 23318456
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    |||||||||||||| | |  |||||| ||||||||||| | |||| ||||||||||||||||||||||    
T  23318522 gctcgcgaggcgagggacattactcgatatggcgagttcagaaaa-ttggttgttcgccttggcgaac 23318456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 14250737 - 14250655
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||  |||||||| || ||| |||| |    ||||||||||||||  |||||||||||||||||||||    
T  14250737 acaaagatcgcaagaaccttaaacaaggttgactgccactgagtacctcgcgaggcgagccactctactcgctatggcgagtt 14250655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 2248673 - 2248600
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatcttta-tcttaacccaaggatcatctca 73  Q
    ||||||||| ||||||| ||| ||||||||| |||||||||||||  || | || |||||||||||||| ||||    
T  2248673 ccatcttatatcagacttactgaacatcaacaatattttaataaactttcattcctaacccaaggatcaactca 2248600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 13210134 - 13210097
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  13210134 gctcgcgaggcgagagcctctactcgccatggcgagtt 13210097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 8928367 - 8928295
Alignment:
Q  2 catcttatgtcagactcactaaacatcaacgatattttaataaatcttta-tcttaacccaaggatcatctca 73  Q
    |||||||| ||||||||||| |||||||||  |||| ||||||| ||| | || |||||||||||||| ||||    
T  8928367 catcttatatcagactcactgaacatcaacagtattataataaaccttcattcctaacccaaggatcaactca 8928295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 11886239 - 11886203
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||||  |||||||||||||||||||||    
T  11886239 ctcgcgaggcgagccactctactcgctatggcgagtt 11886203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 14572903 - 14572939
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  14572903 ctcgcgaggcgagagcctctactcgccatggcgagtt 14572939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 53070504 - 53070468
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  53070504 ctcgcgaggcgagagcctctactcgccatggcgagtt 53070468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 13892775 - 13892973
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |||||| |||||| ||| |||||||||||||    
T  13892775 ccatcttatatcagactcactgaacatcaacaatattttattaaatctttatcttaacccaaggatcaactcataacatctcgtgcgacaaagatcgcaa 13892874  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaa 199  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  13892875 aaaccctaaacaaggttgtctaacactcaaaggctcgcgaggcgagcgcctctactcactatggcgagttcacaaaagttggttgttcgccttggcgaa 13892973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 14044989 - 14045148
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||| ||| ||||||||||| ||||||| ||||||||   ||||| |||     |||||||||||||||  ||||||||    
T  14044989 cccaaggatcaactcataacatctcgtgcgacaaagatcgc-aaaaccctaaacaaggtattctgaaactgggcagctcgcgaggcgagccactctactc 14045087  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    |||||||||||||  ||| | || |   |||||||||||||   |||||||||||||||||||    
T  14045088 gctatggcgagtt--caagaattaggcattcgccttggcgagtaagctactcgccttggcgaa 14045148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 14355019 - 14355178
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||| ||| ||||||||||| ||||||| ||||||||   ||||| |||     |||||||||||||||  ||||||||    
T  14355019 cccaaggatcaactcataacatctcgtgcgacaaagatcgc-aaaaccctaaacaaggtattctgaaactgggcagctcgcgaggcgagccactctactc 14355117  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    |||||||||||||  ||| | || |   |||||||||||||   |||||||||||||||||||    
T  14355118 gctatggcgagtt--caagaattaggcattcgccttggcgagtaagctactcgccttggcgaa 14355178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 9177545 - 9177434
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||| ||||| |||||| |||||| ||| ||||||||||||||| ||| ||||||||   |||| |   |||  |||||||||||||| ||||||||||    
T  9177545 cccaaagatcaactcataacatctcgtgcgacaaagatcgcaaaa-ccctaaacaaggtgttctgtcttacaagagctcgcgaggcgagggcctctactc 9177447  T
Q  158 gctatggcgagtt 170  Q
    |||||||||||||    
T  9177446 gctatggcgagtt 9177434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 36705282 - 36705200
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||| |||||||| || ||| |||| |   |||||||||||||||  |||||||||||||||||||||    
T  36705282 acaaagatcgcaagaaccctaaacaaggttgactgccactgagtagctcgcgaggcgagccactctactcgctatggcgagtt 36705200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 16996492 - 16996602
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgtt 187  Q
    ||||||||||||| ||||| ||||||||||||||||||||     ||||  |||||||||  |||| |||||||||||||||| | ||||   ||||| |    
T  16996492 acaaagatcgcaagaaccctaaacaaggctgtctgacactgtgcagctcatgaggcgagccactctgctcgctatggcgagttcagaaaa--aggttgct 16996589  T
Q  188 cgccttggcgaac 200  Q
    |||||||||||||    
T  16996590 cgccttggcgaac 16996602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 11768786 - 11768687
Alignment:
Q  70 ctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagt 169  Q
    |||||| |||||| | | ||||||||||||||| ||| |||||||| |||||||| ||     |||||||||||||||  ||||||||||||||||||||    
T  11768786 ctcataacatctcgtacgacaaagatcgcaaaa-ccctaaacaaggttgtctgactctatgcagctcgcgaggcgagccactctactcgctatggcgagt 11768688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 14036439 - 14036550
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||| ||| ||||||||||| ||||||| ||||||||   ||||| | |     |||||||||||||||  ||||||||    
T  14036439 cccaaggatcaactcataacatctcgtgcgacaaagatcgc-aaaaccctaaacaaggtattctgaaattggccagctcgcgaggcgagccactctactc 14036537  T
Q  158 gctatggcgagtt 170  Q
    |||||||||||||    
T  14036538 gctatggcgagtt 14036550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 14346469 - 14346580
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||| ||| ||||||||||| ||||||| ||||||||   ||||| | |     |||||||||||||||  ||||||||    
T  14346469 cccaaggatcaactcataacatctcgtgcgacaaagatcgc-aaaaccctaaacaaggtattctgaaattggccagctcgcgaggcgagccactctactc 14346567  T
Q  158 gctatggcgagtt 170  Q
    |||||||||||||    
T  14346568 gctatggcgagtt 14346580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 2279924 - 2279888
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  2279924 ctcgcgaggcgagggcctctactcgctatggcgagtt 2279888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 12255597 - 12255561
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12255597 ctcgcgaggcgagagcctctactcgctatggcgagtt 12255561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 15113259 - 15113295
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  15113259 ctcgcgaggcgagagcctctactcgctatggcgagtt 15113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 16056643 - 16056679
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  16056643 ctcgcgaggcgagagcctctactcgctatggcgagtt 16056679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 130663 - 130535
Alignment:
Q  90 aaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcg 189  Q
    ||||||||||| ||||| ||||||||  ||||| | || |   |||||||||||||| | |  | |||||||||||||||| |  |||  ||||||||||    
T  130663 aaagatcgcaagaaccctaaacaaggtagtctgtctctaaggagctcgcgaggcgagggacgttgctcgctatggcgagttcaggaaa--tggttgttcg 130566  T
Q  190 ccttggcgaaccagctactcgccttggcgaa 220  Q
    |||||||||   |||| ||||||||||||||    
T  130565 ccttggcgagtaagctgctcgccttggcgaa 130535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 20219999 - 20219911
Alignment:
Q  130 aaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||| |||||||  |||||||||||||||||||||| |   |||||||   |||||||||||||   |||||||||||||||||||    
T  20219999 aaggctcgcaaggcgagaacctctactcgctatggcgagttca-ggaagttgg-cattcgccttggcgagtaagctactcgccttggcgaa 20219911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 42462220 - 42462302
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||| |||| ||||| ||||||||||| ||| ||||     ||||||||||||||   |||||||||||||||||||||    
T  42462220 acaaagattgcaagaaccctaaacaaggctgactggcactgtgcagctcgcgaggcgaggcactctactcgctatggcgagtt 42462302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 68060 - 68097
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  68060 gctcgcgaggcgagagcctctactcgccatggcgagtt 68097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 9389502 - 9389465
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  9389502 gctcgcgaggcgagagcctctactcgccatggcgagtt 9389465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 810935 - 810899
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  810935 ctcgcgaggcgagagcctctactcgccatggcgagtt 810899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 4071209 - 4071245
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||||  |||||||||||||||||||||    
T  4071209 ctcgcgaggcgagccactctactcgctatggcgagtt 4071245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 9033225 - 9033162
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctg 122  Q
    ||||||| ||| |||||| |||||| ||| ||||||||||| ||||||| |||||||| ||||||    
T  9033225 cccaagggtcaactcataacatctcgtgcgacaaagatcgc-aaaaccctaaacaaggatgtctg 9033162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 12901644 - 12901680
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||| |||||||| |||||||||||||||||||||||    
T  12901644 ctcgtgaggcgagagcctctactcgctatggcgagtt 12901680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 15008303 - 15008267
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  15008303 ctcgcgaggcgagagcctctactcgctatggtgagtt 15008267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 15096253 - 15096217
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||||  |||||||||||||||||||||    
T  15096253 ctcgcgaggcgagccactctactcgctatggcgagtt 15096217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 15116796 - 15116832
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  15116796 ctcgcgaggcgagagcctctactcgctatggtgagtt 15116832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 16091998 - 16092042
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaa 102  Q
    ||||||||||| |||||| |||||| ||| |||||||||||||||    
T  16091998 cccaaggatcaactcataacatctcgtgcgacaaagatcgcaaaa 16092042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 16219522 - 16219486
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  16219522 ctcgcgaggcgagggcctctactcgccatggcgagtt 16219486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 17017347 - 17017284
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctg 122  Q
    ||||||||||| |||||| |||||  ||| ||||||||||| ||||||| |||||||| ||||||    
T  17017347 cccaaggatcaactcataacatcttgtgcgacaaagatcgc-aaaaccctaaacaaggttgtctg 17017284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 22073231 - 22073267
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  22073231 ctcgcgaggcgagggcctctactcgccatggcgagtt 22073267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 163038 - 162801
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||||||||||| |||||||||  |||||||||||||||| |||| |||| ||||||||||||| | |||||| ||| |||| ||||||||    
T  163038 ccatcttatatcagactcactgaacatcaacagtattttaataaatcttcatctaaacctaaggatcatctcacaacatctcgtgcgacaaggatcgcaa 162939  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    |||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  162938 aaaccctaaacaaggttgtctgacacacaaaggctcgcgaggcgagcgcctctactcgctatggcgagttcacaaaatttggttgttcgccttggcgaac 162839  T
Q  201 cagctactcgccttggcgaataacatcatggtgctctc 238  Q
     |||  ||||||||||||||||| |||| | |||||||    
T  162838 aagcatctcgccttggcgaataaaatcaggatgctctc 162801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 152903 - 152845
Alignment:
Q  11 tcagactcactaaacatcaacgatattttaataaatcttta-tcttaacccaaggatca 68  Q
    |||||||||||||||||||||  |||||||||||| ||| | || ||||||||||||||    
T  152903 tcagactcactaaacatcaacagtattttaataaaccttgattcctaacccaaggatca 152845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9622356 - 9622120
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    ||||||||| ||| ||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||| | ||| |||||||| ||||    
T  9622356 ccatcttatatcaaacttactgaacatcaacaatattttagtaaatctttatcttaacccaaggatcatcacatggcatcacgtgcgacaaagatagcaa 9622257  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    || ||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||    
T  9622256 aa-ccctaaacaaggctgtctgacattcaaaggctcgcaaggcgagcgcctctactcgctatggcgagttcacaaaagttggctgttcaccttggcaaac 9622158  T
Q  201 cagctactcgccttggcgaataacatcatggtgctctc 238  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  9622157 cagctactcgccttggcgaataaaatcagggtgctctc 9622120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 25738563 - 25738800
Alignment:
Q  2 catcttatgtcagactcactaaacatcaacgatattttaataaatctttat-cttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaa 100  Q
    |||||||| ||||||||||| |||||||||  |||||||||||||||| || | |||||||||||||| |||||| |||||| ||| |||||||||||||    
T  25738563 catcttatatcagactcactgaacatcaacagtattttaataaatcttcattcctaacccaaggatcaactcataacatctcatgcgacaaagatcgcaa 25738662  T
Q  101 aaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
     ||||| |||||||| |||| |||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  25738663 gaaccctaaacaaggttgtccgacactcaaaggctcgcgaggcgagtacctctactcgctatggcgagttcacaaaagttggatgttcgccctggcgaac 25738762  T
Q  201 cagctactcgccttggcgaataacatcatggtgctctc 238  Q
     |||  ||| ||||||||||||| |||  |||||||||    
T  25738763 aagcagctcaccttggcgaataaaatctgggtgctctc 25738800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 20078054 - 20077942
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||| ||| ||||||||||||| ||||| ||||||| ||||||||||||     ||||||||||||||   ||||||||    
T  20078054 cccaaggatcaactcataacatctcgtgcgacaaagatcgcaagaaccctaaacaagactgtctgacactgtgcagctcgcgaggcgaggcactctactc 20077955  T
Q  158 gctatggcgagtt 170  Q
    |||||| ||||||    
T  20077954 gctatgacgagtt 20077942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 20224184 - 20224344
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||| ||| ||||||||||||||| ||| ||||||||   |||| |   ||   |||||| ||||||| | |  |||||    
T  20224184 cccaaggatcaactcataacatctcgtgcgacaaagatcgcaaaa-ccctaaacaaggtattctgtcttacaggagctcgcaaggcgagggacattactc 20224282  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||||| |  ||| | |||||||||||||||||||| |||||||||||||||||||    
T  20224283 gctatggcgagttcaggaaaat-ggttgttcgccttggcgaacaagctactcgccttggcgaa 20224344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 22118168 - 22118328
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||| ||| ||||||||||||||| ||| ||||||||   |||| |   ||   |||||| ||||||| | |  |||||    
T  22118168 cccaaggatcaactcataacatctcgtgcgacaaagatcgcaaaa-ccctaaacaaggtattctgtcttacaggagctcgcaaggcgagggacattactc 22118266  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||||| |  ||| | |||||||||||||||||||| |||||||||||||||||||    
T  22118267 gctatggcgagttcaggaaaat-ggttgttcgccttggcgaacaagctactcgccttggcgaa 22118328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 35008464 - 35008549
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcga 219  Q
    |||||||||||||| ||||||||||||||||||||||| ||  ||  |||||| ||||||||||||   ||||||||||||||||||    
T  35008464 gctcgcgaggcgagagcctctactcgctatggcgagttcac-taacatggttgctcgccttggcgagtaagctactcgccttggcga 35008549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 18453423 - 18453535
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||  ||| ||||||||||||||||||| ||||||||  |||||| |||     |||||||||||||||  || |||||    
T  18453423 cccaaggatcaactcataacatcttgtgcgacaaagatcgcaaaaaccctaaacaaggtagtctgatactgtgcagctcgcgaggcgagccactttactc 18453522  T
Q  158 gctatggcgagtt 170  Q
    || ||||||||||    
T  18453523 gcgatggcgagtt 18453535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 17106047 - 17106113
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    ||||||||| |||| |||||||||||| |||||||||| || ||| ||||||||||||||||||||||    
T  17106047 gctcgcgagtcgagggcctctactcgccatggcgagttcac-aaatttggttgttcgccttggcgaac 17106113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 18177471 - 18177394
Alignment:
Q  139 gaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggc 217  Q
    |||||||| |||||||||||| |||||||||| |||||| |||| ||||||||||||||||  |||  |||||||||||    
T  18177471 gaggcgagggcctctactcgccatggcgagttcacaaaa-ttggatgttcgccttggcgaataagcagctcgccttggc 18177394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 18204400 - 18204477
Alignment:
Q  139 gaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggc 217  Q
    |||||||| |||||||||||| |||||||||| |||||| |||| ||||||||||||||||  |||  |||||||||||    
T  18204400 gaggcgagggcctctactcgccatggcgagttcacaaaa-ttggatgttcgccttggcgaataagcagctcgccttggc 18204477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 23077045 - 23077131
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcga 219  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||  ||  ||| || ||||||||||||   ||||||||||||||||||    
T  23077045 ggctcgcaaggcgagagcctctactcgctatggcgagttcac-taacatggctgctcgccttggcgagtaagctactcgccttggcga 23077131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 18199212 - 18199155
Alignment:
Q  142 gcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaac 200  Q
    ||||| |||||||||||| |||||||||| |||||| |||| |||||||||||||||||    
T  18199212 gcgagggcctctactcgccatggcgagttcacaaaa-ttggatgttcgccttggcgaac 18199155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 24550895 - 24550813
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||| |||||||| || ||| |||| |   |||||||||||||||  || ||||||||||||||||||    
T  24550895 acaaagatcgcaagaaccctaaacaaggttgactgccactgagtagctcgcgaggcgagccactatactcgctatggcgagtt 24550813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 19668687 - 19668724
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||||||||||||||    
T  19668687 gctcgcgaggcgagagcctctactcgctatggcgagtt 19668724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 25644637 - 25644673
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  25644637 ctcgcgaggcgagggcctctactcgctatggcgagtt 25644673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 18696728 - 18696888
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||| ||| ||||||||||| ||||||| ||||||||   |||| |   ||   |||||||||||||| | |  |||||    
T  18696728 cccaaggatcaactcataacatctcgtgcgacaaagatcgc-aaaaccctaaacaaggtattctgtcttacaggagctcgcgaggcgagggacattactc 18696826  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||||| | |||| |||  | |||||||||||||    ||| ||||||||||||||    
T  18696827 gctatggcgagttcagaaaa-ttgactattcgccttggcgagtacgctgctcgccttggcgaa 18696888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 4185630 - 4185593
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  4185630 gctcgcgaggcgagagcctctactcgccatggcgagtt 4185593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 4668020 - 4667983
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  4668020 gctcgcgaggcgagagcctctactcgccatggcgagtt 4667983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 9098331 - 9098294
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  9098331 gctcgtgaggcgagagcctctactcgctatggcgagtt 9098294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 17229720 - 17229658
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcga 198  Q
    ||||||||||||||  ||||||||||||||||||||| | ||||   ||||| ||||||||||||    
T  17229720 ctcgcgaggcgagccactctactcgctatggcgagttcagaaaa--aggttgctcgccttggcga 17229658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 20109455 - 20109492
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  20109455 gctcgtgaggcgagagcctctactcgctatggcgagtt 20109492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 22080544 - 22080507
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  22080544 gctcgcgaggcgagagcctctactcgccatggcgagtt 22080507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 95 - 238
Target Start/End: Complemental strand, 172780 - 172637
Alignment:
Q  95 tcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttg 194  Q
    |||||||||||| |||||||| | | ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||    
T  172780 tcgcaaaaaccctaaacaaggttatttgacactcaaaggctcgcgaggcgagcgcctttactcgctatggtgagttcacaaaagttggttgttcgccttg 172681  T
Q  195 gcgaaccagctactcgccttggcgaataacatcatggtgctctc 238  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||    
T  172680 gcgaaccagctacacgccttggcgaataaaatcagggtgctctc 172637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 25744011 - 25744122
Alignment:
Q  109 aacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctact 208  Q
    |||||||| ||||| ||||||| ||||||||||||||| |||||||||||| |||||||||| |||||  |||||||||||||||||||||| |||  ||    
T  25744011 aacaaggcagtctgtcactcaagggctcgcgaggcgagagcctctactcgccatggcgagttcacaaagtttggttgttcgccttggcgaacaagcagct 25744110  T
Q  209 cgccttggcgaa 220  Q
    ||||||||||||    
T  25744111 cgccttggcgaa 25744122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 27988736 - 27988648
Alignment:
Q  133 gctcgcgaggcgagcgcc-tctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    |||||||||| ||| ||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||  ||||||||||||||    
T  27988736 gctcgcgaggtgagagccctctactcgctacggcgagttcacaaaagttggctgttcgccttggcgaacaagcagctcgccttggcgaa 27988648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 15796736 - 15796821
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    |||||||||||||| ||||||||||||  ||||||||| |||||  |||||||||||||||||||||| |||  ||||||||||||||    
T  15796736 gctcgcgaggcgagggcctctactcgcc-tggcgagttcacaaat-ttggttgttcgccttggcgaacaagcagctcgccttggcgaa 15796821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 23470043 - 23470155
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||| ||||| |||||| |||||| ||| ||||||||||||| ||||| ||||||||  ||||||||||     |||| ||||||||||  ||||||||    
T  23470043 cccaatgatcaactcataacatctcctgcgacaaagatcgcaagaaccctaaacaaggtagtctgacactgtgcagctcacgaggcgagcaactctactc 23470142  T
Q  158 gctatggcgagtt 170  Q
    |||||| ||||||    
T  23470143 gctatgacgagtt 23470155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 21328094 - 21327983
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    |||| |||||| |||||| |||||| ||| ||||||||||| ||||||| |||||||||||| ||||  |     |||||||||||||||  |||||||     
T  21328094 cccatggatcaactcataacatctcgtgcgacaaagatcgc-aaaaccctaaacaaggctgtttgactttgtgcagctcgcgaggcgagccactctactt 21327996  T
Q  158 gctatggcgagtt 170  Q
     ||||||||||||    
T  21327995 cctatggcgagtt 21327983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 21501960 - 21501924
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  21501960 ctcgcgaggcgagagcctctactcgctatggcgagtt 21501924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 22144365 - 22144401
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22144365 ctcgcgaggcgagagcctctactcgctatggcgagtt 22144401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 25574349 - 25574238
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| | || | ||| ||||||||||||||| ||| |||||||| |||||| | |||    || ||||||||||||  ||||||||    
T  25574349 cccaaggatcaactcataacctcacgtgcgacaaagatcgcaaaa-ccctaaacaaggttgtctgtctctctgcagcccgcgaggcgagccactctactc 25574251  T
Q  158 gctatggcgagtt 170  Q
    |||||| ||||||    
T  25574250 gctatgacgagtt 25574238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 21329300 - 21329265
Alignment:
Q  135 tcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||| |||||||||||||||||||||||    
T  21329300 tcgcgaggcgagagcctctactcgctatggcgagtt 21329265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 22178026 - 22177988
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  22178026 ggctcgcggggcgagagcctctactcgctatggcgagtt 22177988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 5888982 - 5888945
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  5888982 gctcgcgaggcgagagcctctactcgccatggcgagtt 5888945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 21809386 - 21809349
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||||  |||||||||||||||||||||    
T  21809386 gctcgcgaggcgagccactctactcgctatggcgagtt 21809349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 22959340 - 22959303
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  22959340 gctcgcgaggcgagagcctctactcgccatggcgagtt 22959303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 20026745 - 20026709
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  20026745 ctcgcgaggcgagagcctctactcgctgtggcgagtt 20026709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 21618609 - 21618573
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||||  |||||||||||||||||||||    
T  21618609 ctcgcgaggcgagccactctactcgctatggcgagtt 21618573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 26740526 - 26740482
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaa 102  Q
    ||||||||||| |||| | |||||||||| |||||||||||||||    
T  26740526 cccaaggatcaactcacaacatctcttgcgacaaagatcgcaaaa 26740482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 36154634 - 36154598
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  36154634 ctcgcgaggcgagagcctctactcgccatggcgagtt 36154598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 16381475 - 16381568
Alignment:
Q  109 aacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaacca 202  Q
    |||||||| ||||| ||||||  | ||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  16381475 aacaaggcagtctgtcactcagggactcgcgaggcgagagcctctactccctatggcgagttcacaaaagttggttgttcaccttggcgaacca 16381568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 20958296 - 20958460
Alignment:
Q  6 ttatgtcagactcactaaacatcaacgatattttaataaatctttat-cttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaac 104  Q
    |||| ||||||||||| ||||||||| ||| |  ||| || ||| || ||||  |||||||||| |||||| || ||| ||| |||||||||||||||||    
T  20958296 ttatatcagactcactgaacatcaacaatactacaatcaaccttcattcttacaccaaggatcaactcataaca-ctcgtgcgacaaagatcgcaaaaac 20958394  T
Q  105 ccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    || |||||||||||||||||| |     |||||||||| ||||  |||||||||||||||||||||    
T  20958395 cctaaacaaggctgtctgacattgtgcagctcgcgaggtgagccactctactcgctatggcgagtt 20958460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 219
Target Start/End: Original strand, 22124526 - 22124685
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| | || | ||| |||| |||||||| ||||| |||||||| |||||||||||     ||||| |||||||||  ||||||||    
T  22124526 cccaaggatcaactcataacctcacgtgcgacaaggatcgcaagaaccctaaacaaggatgtctgacactgtgcagctcgtgaggcgagccactctactc 22124625  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcga 219  Q
    ||||||||||||| | ||||   ||||| ||||||||||||   ||||||| ||||||||||    
T  22124626 gctatggcgagttcagaaaa--aggttgctcgccttggcgagtaagctacttgccttggcga 22124685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 27653102 - 27652941
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||| ||||||||||||||| ||||||| ||||||||   |||| |   |||   ||||||||||||| | |  |||||    
T  27653102 cccaaggatcaactcataacatctcgtgcaacaaagatcgc-aaaaccctaaacaaggtattctgtcttacaagaactcgcgaggcgagggacattactc 27653004  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||||| | ||||  ||| | || ||||||||||   |||| ||||||||||||||    
T  27653003 gctatggcgagttcagaaaaagtggctatttgccttggcgagtaagctgctcgccttggcgaa 27652941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 52940757 - 52940646
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||| ||| |||||||||||||||| || | |||||| | | || | |||    |||||||||||||||  ||||||||    
T  52940757 cccaaggatcaactcataacatctcgtgcgacaaagatcgcaaaaa-cctatacaaggttttatgtctctctgcagctcgcgaggcgagccactctactc 52940659  T
Q  158 gctatggcgagtt 170  Q
    |||||||||||||    
T  52940658 gctatggcgagtt 52940646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 26065255 - 26065291
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  26065255 ctcgcgaggcgagagcctctactcgctatggcgagtt 26065291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 50686927 - 50686963
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgag 168  Q
    ||||||||||||||| |||||||||||||||||||||    
T  50686927 ggctcgcgaggcgagagcctctactcgctatggcgag 50686963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 16368093 - 16368055
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  16368093 ggctcgcgaggcgagagcctttactcgctatggcgagtt 16368055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 21861372 - 21861338
Alignment:
Q  136 cgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||| |||||||||||||||||||||||    
T  21861372 cgcgaggcgagggcctctactcgctatggcgagtt 21861338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 45754897 - 45754979
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||| |||||||| || ||| |||| |   |||||||||||||||  | |||||||| ||||||||||    
T  45754897 acaaagatcgcaagaaccctaaacaaggttgactgccactgagtagctcgcgaggcgagccacactactcgcgatggcgagtt 45754979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 20031593 - 20031520
Alignment:
Q  1 ccatcttatgtcagactcactaaacatcaacgatattttaataaatcttta-tcttaacccaaggatcatctca 73  Q
    ||||||| | ||||||||||| ||||||||| | ||||||||||| ||| | || |||||||||||||| ||||    
T  20031593 ccatcttttatcagactcactgaacatcaacaacattttaataaaccttaattcctaacccaaggatcaactca 20031520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 20637164 - 20637201
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  20637164 gctcgcgaggcgagagcctctactcgccatggcgagtt 20637201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 35260885 - 35260852
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcga 167  Q
    ||||||||||||| ||||||||||||||||||||    
T  35260885 ctcgcgaggcgagggcctctactcgctatggcga 35260852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 12271863 - 12271899
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  12271863 ctcgcgaggcgagagcctctactcgctatggagagtt 12271899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 17743 - 17903
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||| ||| ||||||||||||| ||| | ||||||||||| ||||||||     |||||||||||||||  ||||||||    
T  17743 cccaaggatcaactcataacatctcgtgcgacaaagatcgcaagaactctaaacaaggctgcctgacactgtgcagctcgcgaggcgagccactctactc 17842  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||||| | ||||   || || ||||||||||||   ||| |||||||||||||||    
T  17843 gctatggcgagttcagaaaa--aggctgctcgccttggcgagtaagccactcgccttggcgaa 17903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 26392622 - 26392783
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| |||||| | | ||||||||||||||| ||| ||||||||| ||||| |   |||  |||||||||||||| | |  |||||    
T  26392622 cccaaggatcaactcataacatctcctacgacaaagatcgcaaaa-ccctaaacaaggcagtctgtcttacaagagctcgcgaggcgagtgtcattactc 26392720  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||||| |  ||| ||||||||||||||||||||    ||||||||||||||||||    
T  26392721 gctatggcgagttcaggaaaattggttgttcgccttggcgagtaggctactcgccttggcgaa 26392783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 21242926 - 21243029
Alignment:
Q  61 aaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgct 160  Q
    |||||||| |||||| |||||| ||  ||||||||||| ||||||| ||||||||||||||| | ||     |||||||||||||||  |||||||||||    
T  21242926 aaggatcaactcataacatctcgtgagacaaagatcgc-aaaaccctaaacaaggctgtctgtctctgtgcagctcgcgaggcgagccactctactcgct 21243024  T
Q  161 atggc 165  Q
    |||||    
T  21243025 atggc 21243029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 34137181 - 34137293
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||| |||||||||| | || | ||| ||||||||||||| ||||| ||||||||  ||||||||||     ||| ||||||||| |  ||||||||    
T  34137181 cccaagggtcatctcataacctcacatgcgacaaagatcgcaagaaccctaaacaaggtagtctgacactgtgcagctagcgaggcgatccactctactc 34137280  T
Q  158 gctatggcgagtt 170  Q
    |||||||||||||    
T  34137281 gctatggcgagtt 34137293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 25045443 - 25045524
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||| |||||||| || ||| |||| |   |||||||||||||||  |||||||||||||||||||||    
T  25045443 acaaagatcgcaagaaccctaaacaagg-tgactgccactgagtagctcgcgaggcgagccactctactcgctatggcgagtt 25045524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 19672140 - 19672227
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||||||| | |  |||||||||||||||||| | ||||| ||| | |||||||||||||   |||| ||||||||||||||    
T  19672140 ggctcgcgaggcgagggacattactcgctatggcgagttcagaaaag-tggctattcgccttggcgagtaagctgctcgccttggcgaa 19672227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 25109203 - 25109289
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||| |||||| || |||||||||||||||||||||||||  ||| ||||   |||||||||||||   |||||||||||||||||||    
T  25109203 ggctcacgaggcaagagcctctactcgctatggcgagtttaggaaa-ttgg-cattcgccttggcgagtaagctactcgccttggcgaa 25109289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 23791589 - 23791627
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  23791589 ggctcgcgaggcgagagcctctactcgcgatggcgagtt 23791627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 7538 - 7501
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  7538 gctcgtgaggcgagagcctctactcgctatggcgagtt 7501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 18786708 - 18786671
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  18786708 gctcgcgaggcgagagcctctactcgctatggcaagtt 18786671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 20520072 - 20520016
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaagg 115  Q
    ||||||||| | |||||| |||||| ||||||||||||||| ||||||| ||||||||    
T  20520072 cccaaggataaactcataacatctcgtgcaacaaagatcgc-aaaaccctaaacaagg 20520016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 31756231 - 31756268
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  31756231 gctcgcgaggcgagagcctctactcgccatggcgagtt 31756268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 18546824 - 18546765
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctg 118  Q
    ||||||||||| |||||| ||| || ||| ||||||||||| ||||||| |||||||||||    
T  18546824 cccaaggatcaactcataacatttcgtgcgacaaagatcgc-aaaaccctaaacaaggctg 18546765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 22412936 - 22412904
Alignment:
Q  138 cgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||| |||||||||||||||||||||||    
T  22412936 cgaggcgagagcctctactcgctatggcgagtt 22412904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 22459366 - 22459330
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||| || |||||||||||||||||||||||    
T  22459366 ctcgcgaggcaagagcctctactcgctatggcgagtt 22459330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 23207594 - 23207630
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  23207594 ctcgcaaggcgagagcctctactcgctatggcgagtt 23207630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 23708424 - 23708388
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  23708424 ctcgcaaggcgagagcctctactcgctatggcgagtt 23708388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 40907314 - 40907456
Alignment:
Q  60 caaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgc 159  Q
    ||||||||| |||||| |||||| ||| ||||||||| ||| ||||| |||||||| |||||||||||     |||||||||||||||  || |||||||    
T  40907314 caaggatcaactcataacatctcgtgcgacaaagatcacaagaaccctaaacaaggttgtctgacactgtgcagctcgcgaggcgagccactttactcgc 40907413  T
Q  160 tatggcgagtttacaaaagttggttgttcgccttggcgaaccag 203  Q
    |||| |||||| | | || |||| ||||||||||||||||||||    
T  40907414 tatgtcgagttca-agaaattggctgttcgccttggcgaaccag 40907456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 26050358 - 26050212
Alignment:
Q  55 taacccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctcta 154  Q
    |||||||||||||| |||| | | ||   ||| ||||||||||||| ||||| |||||||| |||||||||||     ||||| |||||||||  |||||    
T  26050358 taacccaaggatcaactcaaaacctcatgtgcgacaaagatcgcaagaaccctaaacaaggttgtctgacactgtgcagctcgtgaggcgagccactcta 26050259  T
Q  155 ctcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccag 203  Q
    |||||||||||||||| | ||||   ||||| |||||||||||| ||||    
T  26050258 ctcgctatggcgagttcagaaaa--aggttgctcgccttggcgagccag 26050212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 14852755 - 14852617
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||| ||| || ||| |||||| ||| ||||||||||||||| ||| ||||||||| ||||| | || |   |||||||||||||| | |  |||||    
T  14852755 cccaagggtcaacttataacatctcgtgcgacaaagatcgcaaaa-ccctaaacaaggcagtctgtctctaaggagctcgcgaggcgagggacattactc 14852657  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcga 198  Q
    ||||||||||||| |  |||  |||||||||||||||||||    
T  14852656 gctatggcgagttcaggaaa-atggttgttcgccttggcga 14852617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 32466922 - 32466840
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||| |||| ||||| | |||||| || ||| |||| |  ||||||||||||||||  |||||||||||||||||||||    
T  32466922 acaaagatagcaagaaccctacacaaggttgactgccactgagtggctcgcgaggcgagccactctactcgctatggcgagtt 32466840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 13655 - 13619
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  13655 ctcgcgaggcgagggcctctactcgctatggcgagtt 13619  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 52242999 - 52242963
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  52242999 ctcgcgaggcgagagcctctactcgctatggcgagtt 52242963  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 19738517 - 19738599
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||| |||||||| |||||| ||||     ||||||||||||| |   ||||||||||||||||||||    
T  19738517 acaaagatcgcaagaaccctaaacaaggttgtctgtcactgtgcagctcgcgaggcgaaccattctactcgctatggcgagtt 19738599  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 27996182 - 27996264
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||| |||| ||||| |||||||| |||||| ||||     |||||||||||||||   ||||||||||||||||||||    
T  27996182 acaaagattgcaagaaccctaaacaaggttgtctgtcactgtgcagctcgcgaggcgagccattctactcgctatggcgagtt 27996264  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 53081957 - 53081919
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  53081957 ggctcgcgacgcgagagcctctactcgctatggcgagtt 53081919  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 8846688 - 8846725
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  8846688 gctcgcgaggcgagagcctctactcgccatggcgagtt 8846725  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 12288015 - 12287978
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| || ||||||||||||||||||||    
T  12288015 gctcgcgaggcgagagcttctactcgctatggcgagtt 12287978  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 15099664 - 15099701
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  15099664 gctcgcgaggcgagagcctctactcgccatggcgagtt 15099701  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 17333521 - 17333577
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaagg 115  Q
    ||||||||||| |||||| |||||| ||| ||||||||||| ||||||| ||||||||    
T  17333521 cccaaggatcaactcataacatctcgtgcgacaaagatcgc-aaaaccctaaacaagg 17333577  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 50160404 - 50160461
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaagg 115  Q
    |||||||| || |||||| |||||| ||| ||||||||||| ||||||| ||||||||    
T  50160404 cccaaggaccaactcataacatctcgtgcgacaaagatcgccaaaaccctaaacaagg 50160461  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 15190631 - 15190667
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagt 169  Q
    |||||||||||||| |||||||||||| |||||||||    
T  15190631 gctcgcgaggcgagagcctctactcgccatggcgagt 15190667  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 15464735 - 15464699
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  15464735 ctcgcgaggcgagagcctctactcgctatggtgagtt 15464699  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 21815108 - 21815072
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  21815108 ctcgcgaggcgagagcctctactcgccatggcgagtt 21815072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 21815437 - 21815401
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  21815437 ctcgcgaggcgagagcctctactcgccatggcgagtt 21815401  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 21818530 - 21818494
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  21818530 ctcgcgaggcgagagcctctactcgccatggcgagtt 21818494  T

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Target: scaffold0282 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 18047 - 17935
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||||||| |||||| ||||||  || |||||||||||| |||||| |||||||| |||||||||||     ||||||||||||||   ||||||||    
T  18047 cccaaggatcaactcataacatctcgggcgacaaagatcgcagaaaccctaaacaaggttgtctgacactgtgcagctcgcgaggcgaggcactctactc 17948  T
Q  158 gctatggcgagtt 170  Q
    |||||||||||||    
T  17947 gctatggcgagtt 17935  T

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Target: scaffold0379 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 4468 - 4386
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||| |||||||||||     |||||||||||||||  |||||||||||||||||||||    
T  4468 acaaagatcgcaagaacccaaaacaaggttgtctgacactgtgcagctcgcgaggcgagccactctactcgctatggcgagtt 4386  T

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Target: scaffold0379; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 14462 - 14378
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttta 172  Q
    ||||||||||||| ||||| |||||||| ||||||| |||     ||||| |||||||||  ||||| |||||||||||||||||    
T  14462 acaaagatcgcaagaaccctaaacaaggttgtctgatactgtgcagctcgtgaggcgagccactctagtcgctatggcgagttta 14378  T

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Target: scaffold0108 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 3420 - 3526
Alignment:
Q  61 aaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgct 160  Q
    |||||||| |||||| ||||||  || ||||||||||||||||||| ||||||||||||||||||||     ||||||||||||||   |||||||| ||    
T  3420 aaggatcaactcataacatctcgggcgacaaagatcgcaaaaaccctaaacaaggctgtctgacactgtgcagctcgcgaggcgaggcactctactcact 3519  T
Q  161 atggcga 167  Q
    |||||||    
T  3520 atggcga 3526  T

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Target: scaffold1419 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1419
Description:

Target: scaffold1419; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 337 - 423
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    |||||||||||||| |||||||||||| ||||||||||||  |||  ||| ||||| ||||||||||| |||| ||||||||||||||    
T  337 gctcgcgaggcgagggcctctactcgccatggcgagtttaggaaa-atggatgttcaccttggcgaacaagctgctcgccttggcgaa 423  T

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Target: scaffold0321 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 616 - 534
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||| |||||||| || ||| |||| |   |||||||||||||||  |||||||||||||||||||||    
T  616 acaaagatcgcaagaaccctaaacaaggttgactgccactgagtagctcgcgaggcgagccactctactcgctatggcgagtt 534  T

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Target: scaffold0074 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 8368 - 8533
Alignment:
Q  6 ttatgtcagactcactaaacatcaacgatattttaataaatctttat-cttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaac 104  Q
    |||||||||||||||| |||||| || ||||| |||  || ||  || | || |||| |||||| |||| | |||||| ||| ||||||||||||| |||    
T  8368 ttatgtcagactcactgaacatcgacaatattataagcaacctccattcctaccccacggatcaactcacatcatctcgtgcgacaaagatcgcaagaac 8467  T
Q  105 ccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    || |||||||| |||||||||||      |||||||||||||   |||||||||||||| ||||||    
T  8468 cctaaacaaggatgtctgacactgtgcaactcgcgaggcgaggcactctactcgctatgacgagtt 8533  T

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Target: scaffold0750 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 3838 - 3996
Alignment:
Q  60 caaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgc 159  Q
    ||||||||| |||||| |||||| ||  ||||||||||| ||||||| ||||||||||||||| | ||  |  |||||||||||||| |    | |||||    
T  3838 caaggatcaactcataacatctcgtgtgacaaagatcgc-aaaaccctaaacaaggctgtctgcctctgcacagctcgcgaggcgagggagattgctcgc 3936  T
Q  160 tatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||| | |||| |||| | ||||||| |||||   |||| ||||||||||||||    
T  3937 tatggcgagttcagaaaa-ttggctattcgcctcggcgagtaagctgctcgccttggcgaa 3996  T

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Target: scaffold0338 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 11457 - 11357
Alignment:
Q  70 ctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagt 169  Q
    |||||| |||||| ||| ||||| ||||||| || || |||||||| |||||| |||| |   |||||||||||||||  ||||||||| ||||||||||    
T  11457 ctcataacatctcgtgcgacaaatatcgcaagaatcctaaacaaggttgtctgccactgagtagctcgcgaggcgagccactctactcgttatggcgagt 11358  T
Q  170 t 170  Q
    |    
T  11357 t 11357  T

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Target: scaffold0151 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 30456 - 30540
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagttta 172  Q
    ||||||||||||| ||||| |||||||| |||||| || | |    ||||||||||||||  |||||||||||||||||||||||    
T  30456 acaaagatcgcaagaaccctaaacaaggttgtctgccaatgagcaactcgcgaggcgagccactctactcgctatggcgagttta 30540  T

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Target: scaffold0914 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0914
Description:

Target: scaffold0914; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 2019 - 2105
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    |||||||||||||| | |  |||||||||||| |||||||  ||  ||||||||||||||||||||   |||||||||||||||||||    
T  2019 gctcgcgaggcgagggacattactcgctatggtgagtttaggaat-ttggttgttcgccttggcgagtaagctactcgccttggcgaa 2105  T

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Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 128776 - 128691
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    |||||||||||||| ||||||||||||||||||||||| |  ||| ||||   |||||||||||||   |||||||||||||||||||    
T  128776 gctcgcgaggcgagagcctctactcgctatggcgagttcaggaaa-ttgg-aattcgccttggcgagtaagctactcgccttggcgaa 128691  T

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Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 169
Target Start/End: Original strand, 835 - 998
Alignment:
Q  6 ttatgtcagactcactaaacatcaacgatattttaataaatctttatcttaacccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacc 105  Q
    |||| ||||||||||| |||||||||  |||| |||| || ||  ||| || ||||||| |||||||||| | || |  || || |||||||||||||||    
T  835 ttatatcagactcactgaacatcaacagtattataatcaacctccatcctaccccaagggtcatctcataacttcacgagcgactaagatcgcaaaaacc 934  T
Q  106 caaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagt 169  Q
    | ||||||| |||| | |||||     | ||||||| |||||  ||||||||||||||||||||    
T  935 ctaaacaagactgtttaacactgtgcagttcgcgagccgagccactctactcgctatggcgagt 998  T

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Target: scaffold0010; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 60519 - 60483
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  60519 ctcgcgaggcgagagcctctactcgctatggcgagtt 60483  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 97319 - 97405
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcga 219  Q
    ||||||||||||||| ||||||||||||||||||||||| ||  ||  ||| || || |||||||||   ||||||||||||||||||    
T  97319 ggctcgcgaggcgagagcctctactcgctatggcgagttcac-taacatggctgctctccttggcgagtaagctactcgccttggcga 97405  T

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Target: scaffold0006; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 106597 - 106683
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcga 219  Q
    ||||||||||||||| ||||||||||||||||||||||| ||  ||  ||| || || |||||||||   ||||||||||||||||||    
T  106597 ggctcgcgaggcgagagcctctactcgctatggcgagttcac-taacatggctgctctccttggcgagtaagctactcgccttggcga 106683  T

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Target: scaffold0409 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0409
Description:

Target: scaffold0409; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 665 - 747
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||| |||||||| |  ||| |||| |   |||||||||||||||  |||||||||||||||||||||    
T  665 acaaagatcgcaagaaccctaaacaaggttaactgccactaagtagctcgcgaggcgagccactctactcgctatggcgagtt 747  T

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Target: scaffold0409; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 8920 - 9002
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||| |||||||| |  ||| |||| |   |||||||||||||||  |||||||||||||||||||||    
T  8920 acaaagatcgcaagaaccctaaacaaggttaactgccactaagtagctcgcgaggcgagccactctactcgctatggcgagtt 9002  T

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Target: scaffold0139 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 38632 - 38670
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  38632 ggctcgcgaggcgagagcctctactcgctatggcgagtt 38670  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 95724 - 95813
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtttacaaaa 177  Q
    |||| |||||||| ||||| |||||||| || ||| |||| |    ||||||||||||||  ||||||||||||||||||||||| ||||    
T  95724 acaatgatcgcaagaaccctaaacaaggttgactgccactgagtaactcgcgaggcgagccactctactcgctatggcgagtttagaaaa 95813  T

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Target: scaffold0621 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0621
Description:

Target: scaffold0621; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 8785 - 8821
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  8785 ctcgcgaggcgagggcctctactcgctatggcgagtt 8821  T

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Target: scaffold0507 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 7863 - 7827
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  7863 ctcgcgaggcgagagcctctactcgctatggcgagtt 7827  T

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Target: scaffold0165 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 27524 - 27488
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  27524 ctcgcgaggcgagggcctctactcgctatggcgagtt 27488  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 10843 - 10879
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  10843 ctcgcgaggcgagagcctctactcgctatggcgagtt 10879  T

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Target: scaffold0075 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 53353 - 53317
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  53353 ctcgcgaggcgagggcctctactcgctatggcgagtt 53317  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 136172 - 136136
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  136172 ctcgcgaggcgagagcctctactcgctatggcgagtt 136136  T

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Target: scaffold0021; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 144880 - 144844
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||||||||||    
T  144880 ctcgcgaggcgagagcctctactcgctatggcgagtt 144844  T

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Target: scaffold0076 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 24477 - 24430
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacc 105  Q
    ||||||||||| |||||| |||||| ||| ||||||||||||||||||    
T  24477 cccaaggatcaactcataacatctcgtgcgacaaagatcgcaaaaacc 24430  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 3702 - 3627
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatg 163  Q
    ||||||||||||| ||| | ||||||||||| ||| |||| ||   ||||||||||||||  ||||||||||||||    
T  3702 acaaagatcgcaagaacactaaacaaggctgactgccactgaacaactcgcgaggcgagctactctactcgctatg 3627  T

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Target: scaffold1351 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 320 - 358
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  320 ggctcacgaggcgagagcctctactcgctatggcgagtt 358  T

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Target: scaffold0628 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 4143 - 4061
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||| | |||||||| || |||||||| |    ||||||||||||||  |||||||| ||||||||||||    
T  4143 acaaagatcgcaagaacactaaacaaggttgactgacactgagtaactcgcgaggcgagccactctactcactatggcgagtt 4061  T

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Target: scaffold0628; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 8703 - 8621
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||| | |||||||| || |||||||| |    ||||||||||||||  |||||||| ||||||||||||    
T  8703 acaaagatcgcaagaacactaaacaaggttgactgacactgagtaactcgcgaggcgagccactctactcactatggcgagtt 8621  T

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Target: scaffold0628; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 2608 - 2572
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  2608 ctcgcgaggcgagagcctctactcgccatggcgagtt 2572  T

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Target: scaffold0138 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 18044 - 18006
Alignment:
Q  132 ggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  18044 ggctcgcgaggcgagagcctccactcgctatggcgagtt 18006  T

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Target: scaffold0138; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 13254 - 13291
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  13254 gctcgcgaggcgagggcctctactcgccatggcgagtt 13291  T

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Target: scaffold0077 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 55564 - 55405
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactc 157  Q
    ||||||| ||| |||||| |||||| ||| ||||||||||| ||||||| |||||| |||||||| | || |   ||||||||||||||   |  || ||    
T  55564 cccaagggtcaactcataacatctcgtgcgacaaagatcgc-aaaaccctaaacaaagctgtctgtctctaaggagctcgcgaggcgaggaacattaatc 55466  T
Q  158 gctatggcgagtttacaaaagttggttgttcgccttggcgaaccagctactcgccttggcgaa 220  Q
    ||||||||||||| |  |||  ||| |||||||||||||||   |||| ||||||||||||||    
T  55465 gctatggcgagttcaggaaa-atggatgttcgccttggcgagtaagct-ctcgccttggcgaa 55405  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 109603 - 109685
Alignment:
Q  88 acaaagatcgcaaaaacccaaaacaaggctgtctgacactcaaaggctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||| ||  ||||||| ||| |||| |    ||||||||||||||  |||||||||||||||||||||    
T  109603 acaaagatcgcaagaaccctaagtaaggctgactgccactgagtaactcgcgaggcgagccactctactcgctatggcgagtt 109685  T

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Target: scaffold0475 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 9390 - 9427
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  9390 gctcgcgaggcgagagcctctactcgccatggcgagtt 9427  T

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Target: scaffold0413 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 12883 - 12920
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  12883 gctcgcgaggcgagagcctctactccctatggcgagtt 12920  T

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Target: scaffold0413; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 15421 - 15385
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  15421 ctcgcgaggcgagagcctctgctcgctatggcgagtt 15385  T

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Target: scaffold0125 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 45597 - 45560
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  45597 gctcgcgaggcgagagcctctactcgccatggcgagtt 45560  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 778 - 834
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaagg 115  Q
    ||||||||||| ||||||  ||||| ||||||||||||||| ||||||| ||||||||    
T  778 cccaaggatcaactcataaaatctcgtgcaacaaagatcgc-aaaaccctaaacaagg 834  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 32850 - 32887
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  32850 gctcgcgaggcgagggcctctactcgccatggcgagtt 32887  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 15637 - 15600
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  15637 gctcgcgaggcgagggcctctactcgccatggcgagtt 15600  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 397979 - 398016
Alignment:
Q  133 gctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||||||||||||||  |||||||||||||||||||||    
T  397979 gctcgcgaggcgagccactctactcgctatggcgagtt 398016  T

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Target: scaffold0737 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 1598 - 1566
Alignment:
Q  138 cgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||| |||||||||||||||||||||||    
T  1598 cgaggcgagagcctctactcgctatggcgagtt 1566  T

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Target: scaffold0555 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 10346 - 10310
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  10346 ctcgcgaggcgagagcctctactcgctttggcgagtt 10310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 15904 - 15868
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  15904 ctcgcgaggcgagggcctatactcgctatggcgagtt 15868  T

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Target: scaffold0218 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 7881 - 7845
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  7881 ctcgcgaggcgagagcctttactcgctatggcgagtt 7845  T

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Target: scaffold0169 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 29303 - 29240
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaaacccaaaacaaggctgtctg 122  Q
    ||||||| ||| |||||| |||||| ||| ||||||||||| ||||||| |||||||| ||||||    
T  29303 cccaagggtcaactcataacatctcgtgcgacaaagatcgc-aaaaccctaaacaaggatgtctg 29240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 9964 - 9920
Alignment:
Q  58 cccaaggatcatctcatagcatctcttgcaacaaagatcgcaaaa 102  Q
    ||||||||||| |||||| |||||| ||| |||||||||||||||    
T  9964 cccaaggatcaactcataacatctcgtgcgacaaagatcgcaaaa 9920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 103443 - 103407
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    |||| |||||||| |||||||||||||||||||||||    
T  103443 ctcgtgaggcgagagcctctactcgctatggcgagtt 103407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 267967 - 268003
Alignment:
Q  134 ctcgcgaggcgagcgcctctactcgctatggcgagtt 170  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  267967 ctcgcgaggcgagagcctctactcgctatgccgagtt 268003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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