View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12673_high_11 (Length: 246)
Name: NF12673_high_11
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12673_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 6495564 - 6495333
Alignment:
| Q |
1 |
tatcaagtatcaagccactattctgaaaccaacactctatctagtttactcactgtgacaccatttcgatgtgcttagacaaaatgcctcccaagaagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6495564 |
tatcaagtatcaagccactattctgaaaccaacactctatctagtttactcactgtgacaccatttcgatgtgcttagacaaaatgcctcccaagaagag |
6495465 |
T |
|
| Q |
101 |
gtaggtcaataaatttcatataagccaagaactgattgaaccactatatataatgttaagctatgttggattccctgattcaaacctcttcgctcatcaa |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6495464 |
gtaggtcaataaattccatataagccaagaactgattgaaccactatatataatgttaagctatgttggattccctaattcaaacctcttcgctcatcaa |
6495365 |
T |
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| Q |
201 |
agttagtaactaaattaaaatctcccatcgta |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6495364 |
agttagtaactaaattaaaatctcccatcgta |
6495333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 31730317 - 31730082
Alignment:
| Q |
1 |
tatcaagtatcaagccactattctgaaaccaacactctatctagtttactcactgtgacaccatttcgatgtgcttagacaaaatgcctcccaagaagag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31730317 |
tatcaagtatcaagccactattctgaaaccaacactctatctagtctactcattgtgacaccatttcgatgtgcttagacagaatgcctcccaagaagag |
31730218 |
T |
|
| Q |
101 |
gtaggtcaataaatttcatataagccaagaactgattgaaccactatatataat-----gttaagctatgttggattccctgattcaaacctcttcgctc |
195 |
Q |
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| T |
31730217 |
gcaggtcaataaattccatataagccaagaactgattgaaccactatatatgatatgatgttaagctatgttggattccc-gattcaaacctcttcgctc |
31730119 |
T |
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| Q |
196 |
atcaaagttagtaactaaattaaaatctcccatcgta |
232 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
31730118 |
atcaaagttagtaactaaattaaaatctcccatcgta |
31730082 |
T |
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