View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12673_high_19 (Length: 212)
Name: NF12673_high_19
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12673_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 17888809 - 17888735
Alignment:
| Q |
112 |
agaagtatacatccaaactaaacatctatctaataatgaatactttcgaacaaaggcaattaactaaataaaaccgata |
190 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17888809 |
agaagtatacatccaaactaaacatcta----ataatgaatactttcgaacaaaggcaattaactaaataaaaccgata |
17888735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 17888901 - 17888860
Alignment:
| Q |
21 |
atcatctagactataacaatgcagtgttatgccgttagatgg |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17888901 |
atcatctagactataacaatgcagtgttatgccgttagatgg |
17888860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University