View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12673_high_4 (Length: 351)

Name: NF12673_high_4
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12673_high_4
NF12673_high_4
[»] chr1 (27 HSPs)
chr1 (20-337)||(2896073-2896388)
chr1 (31-145)||(1815242-1815353)
chr1 (30-144)||(5898228-5898339)
chr1 (116-186)||(398810-398880)
chr1 (62-177)||(9709773-9709885)
chr1 (61-144)||(36878447-36878527)
chr1 (30-119)||(40181879-40181968)
chr1 (27-187)||(10577694-10577851)
chr1 (78-166)||(15641040-15641125)
chr1 (30-108)||(43492456-43492534)
chr1 (30-107)||(18190070-18190147)
chr1 (30-107)||(40258895-40258972)
chr1 (27-107)||(51410045-51410125)
chr1 (54-113)||(30749854-30749913)
chr1 (54-113)||(30771305-30771364)
chr1 (39-143)||(29163352-29163453)
chr1 (20-78)||(32461405-32461463)
chr1 (116-166)||(40917715-40917765)
chr1 (116-157)||(5376545-5376586)
chr1 (116-165)||(10572634-10572683)
chr1 (116-165)||(48040507-48040556)
chr1 (116-188)||(609503-609575)
chr1 (30-78)||(9828104-9828152)
chr1 (116-144)||(17831576-17831604)
chr1 (59-119)||(28674808-28674868)
chr1 (63-145)||(39953141-39953220)
chr1 (126-186)||(48548017-48548077)
[»] chr6 (21 HSPs)
chr6 (32-155)||(9658854-9658974)
chr6 (30-166)||(34595098-34595231)
chr6 (62-175)||(5732504-5732614)
chr6 (116-186)||(7938060-7938130)
chr6 (62-166)||(13851700-13851801)
chr6 (30-145)||(28152084-28152195)
chr6 (63-145)||(7265588-7265667)
chr6 (59-141)||(19040341-19040420)
chr6 (69-166)||(9027142-9027236)
chr6 (116-175)||(16766652-16766711)
chr6 (39-143)||(7377966-7378067)
chr6 (116-186)||(8777018-8777088)
chr6 (116-186)||(9107415-9107485)
chr6 (116-165)||(3398584-3398633)
chr6 (30-145)||(17841551-17841663)
chr6 (30-78)||(9107321-9107369)
chr6 (116-175)||(426559-426618)
chr6 (116-157)||(12696297-12696338)
chr6 (116-173)||(18803556-18803613)
chr6 (50-107)||(24645501-24645558)
chr6 (30-63)||(31959214-31959247)
[»] chr7 (27 HSPs)
chr7 (50-186)||(25481846-25481979)
chr7 (20-166)||(598172-598315)
chr7 (30-108)||(32287425-32287503)
chr7 (21-144)||(5835233-5835353)
chr7 (30-119)||(27093375-27093464)
chr7 (30-119)||(27184837-27184926)
chr7 (50-143)||(20549778-20549868)
chr7 (50-144)||(22484011-22484102)
chr7 (70-186)||(17851375-17851488)
chr7 (116-177)||(11061121-11061182)
chr7 (116-165)||(27945006-27945055)
chr7 (87-150)||(32308100-32308160)
chr7 (71-141)||(2948672-2948739)
chr7 (116-164)||(13770657-13770705)
chr7 (87-157)||(22868015-22868082)
chr7 (30-78)||(26033412-26033460)
chr7 (61-113)||(39138458-39138510)
chr7 (20-119)||(21880160-21880259)
chr7 (30-73)||(43027426-43027469)
chr7 (116-186)||(1433398-1433468)
chr7 (120-166)||(11722147-11722193)
chr7 (30-162)||(12278797-12278932)
chr7 (31-119)||(1401033-1401119)
chr7 (116-165)||(5235951-5236000)
chr7 (116-157)||(24105651-24105692)
chr7 (116-165)||(24339607-24339656)
chr7 (87-157)||(29787388-29787455)
[»] chr4 (17 HSPs)
chr4 (30-166)||(23292948-23293081)
chr4 (31-119)||(8423681-8423769)
chr4 (20-177)||(35157937-35158091)
chr4 (28-78)||(30982827-30982877)
chr4 (30-165)||(12895236-12895368)
chr4 (30-166)||(49430990-49431123)
chr4 (31-118)||(9996849-9996936)
chr4 (116-187)||(20633428-20633499)
chr4 (26-76)||(903984-904034)
chr4 (69-119)||(4672086-4672136)
chr4 (30-108)||(35161055-35161133)
chr4 (116-145)||(17345460-17345489)
chr4 (87-186)||(24343451-24343547)
chr4 (134-186)||(21873426-21873478)
chr4 (134-186)||(21929287-21929339)
chr4 (116-144)||(35723430-35723458)
chr4 (51-107)||(54580006-54580062)
[»] chr3 (13 HSPs)
chr3 (31-145)||(18426934-18427045)
chr3 (59-165)||(8842295-8842397)
chr3 (30-107)||(40993297-40993374)
chr3 (39-165)||(4466571-4466694)
chr3 (30-98)||(23657768-23657836)
chr3 (27-166)||(28917965-28918103)
chr3 (62-166)||(8383221-8383322)
chr3 (116-186)||(24205086-24205156)
chr3 (69-166)||(38731182-38731276)
chr3 (116-166)||(10335331-10335381)
chr3 (20-78)||(14209173-14209231)
chr3 (87-186)||(3164044-3164140)
chr3 (86-165)||(11610486-11610562)
[»] chr8 (16 HSPs)
chr8 (32-119)||(14134707-14134794)
chr8 (54-144)||(4786324-4786411)
chr8 (27-165)||(31556962-31557096)
chr8 (116-187)||(22651919-22651990)
chr8 (40-78)||(29447504-29447542)
chr8 (116-186)||(29510349-29510419)
chr8 (116-165)||(25192392-25192441)
chr8 (27-107)||(3951495-3951575)
chr8 (39-119)||(20679366-20679446)
chr8 (30-78)||(22652036-22652084)
chr8 (30-78)||(29510255-29510303)
chr8 (30-104)||(8293848-8293922)
chr8 (116-165)||(4673470-4673519)
chr8 (30-79)||(29447061-29447110)
chr8 (63-145)||(34897070-34897149)
chr8 (30-118)||(40332200-40332288)
[»] scaffold0652 (1 HSPs)
scaffold0652 (30-177)||(424-568)
[»] chr5 (23 HSPs)
chr5 (27-119)||(30502347-30502439)
chr5 (27-119)||(30542690-30542782)
chr5 (20-107)||(43564901-43564988)
chr5 (30-166)||(17123012-17123144)
chr5 (30-162)||(21191018-21191147)
chr5 (116-163)||(15410493-15410540)
chr5 (116-186)||(15382421-15382491)
chr5 (116-166)||(21137653-21137703)
chr5 (116-186)||(21522694-21522764)
chr5 (116-186)||(21533260-21533330)
chr5 (116-165)||(19820439-19820488)
chr5 (116-165)||(22013379-22013428)
chr5 (30-165)||(26312734-26312866)
chr5 (69-145)||(3966488-3966561)
chr5 (69-177)||(13287400-13287505)
chr5 (59-139)||(28588665-28588742)
chr5 (116-149)||(6035464-6035497)
chr5 (30-83)||(39268560-39268613)
chr5 (116-144)||(2436908-2436936)
chr5 (126-186)||(6401442-6401502)
chr5 (71-119)||(17593725-17593773)
chr5 (116-144)||(27144449-27144477)
chr5 (30-78)||(39698601-39698649)
[»] scaffold0053 (1 HSPs)
scaffold0053 (31-175)||(8753-8894)
[»] chr2 (14 HSPs)
chr2 (66-177)||(18276474-18276582)
chr2 (30-157)||(18840975-18841099)
chr2 (27-119)||(5367200-5367292)
chr2 (28-144)||(31808063-31808176)
chr2 (30-107)||(2438681-2438758)
chr2 (30-145)||(15972858-15972970)
chr2 (27-107)||(5040754-5040834)
chr2 (53-155)||(20242712-20242811)
chr2 (87-155)||(21616737-21616802)
chr2 (34-157)||(21091696-21091816)
chr2 (30-145)||(37558962-37559074)
chr2 (71-145)||(23718011-23718082)
chr2 (71-145)||(24105683-24105754)
chr2 (34-140)||(37411210-37411313)
[»] scaffold0027 (1 HSPs)
scaffold0027 (69-186)||(46626-46740)
[»] scaffold0022 (1 HSPs)
scaffold0022 (28-119)||(90851-90942)
[»] scaffold0003 (1 HSPs)
scaffold0003 (116-166)||(241558-241608)
[»] scaffold0007 (1 HSPs)
scaffold0007 (116-177)||(225313-225374)
[»] scaffold0116 (1 HSPs)
scaffold0116 (119-186)||(9842-9909)
[»] scaffold0223 (1 HSPs)
scaffold0223 (116-165)||(20137-20186)
[»] scaffold0050 (1 HSPs)
scaffold0050 (30-107)||(70298-70375)
[»] scaffold0004 (1 HSPs)
scaffold0004 (116-145)||(92792-92821)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 2896073 - 2896388
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||       
T  2896073 gacacttcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattatgtgattttctcaaatta--- 2896169  T
Q  120 ttagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatagccacatactcatgatttatggctgctcttattt 219  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2896170 ttagcggtgtcggcgtgtcagtgtccgtgttgtgtccgttgtccgtgactgtatccgttcttcatagccacatactcatgatttatggctgctcttattt 2896269  T
Q  220 tctcaaatatttcttcatgtcttgcatgttccttgtgtccactgtg-aattgtgtcataccatcttttgtttcctcaatcctaaagctttggtcgtggcc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2896270 tctcaaatatttcttcatgtcttgcatgttccttgtgtccactgtgcaattgtgtcataccatcttttgtttcctcaatcctaaagctttggtcgtggcc 2896369  T
Q  319 tatatttacatactacagt 337  Q
    |||||||||||||||||||    
T  2896370 tatatttacatactacagt 2896388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 1815353 - 1815242
Alignment:
Q  31 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtc 130  Q
    ||||||| |||||||||| |||||||  ||||||||| ||||||||||  | ||  |||||||||||| ||||||||  ||||| |||||| |   ||||    
T  1815353 gattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaattatgtgattttttaaaataattatttg---tgtc 1815257  T
Q  131 ggcgtgtcagtgtcc 145  Q
    |||||||||||||||    
T  1815256 ggcgtgtcagtgtcc 1815242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 5898228 - 5898339
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||||  |||||||||| | |||||| |||||||||||||||||||  |||||  |||||||||||| ||||||||   |    ||||||||||||||    
T  5898228 ggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatgtgattttttca---gattattagcggtgt 5898324  T
Q  130 cggcgtgtcagtgtc 144  Q
    |||||| ||||||||    
T  5898325 cggcgtctcagtgtc 5898339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 398810 - 398880
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| | | |||||||| ||| ||||    
T  398810 attattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgcgtccgtatccgtgcttcatag 398880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 9709885 - 9709773
Alignment:
Q  62 cgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgt 161  Q
    |||||| |||||||||| |||||  ||||  |||||| |||||||||  |||||||||   ||||||| ||| ||||||||||| ||| ||||| |||||    
T  9709885 cgtgtccgacaccgacacatataattacaacgaattatgtgattttctcaaattatta---gcggtgtaggcatgtcagtgtccgtgtcgtgtctgatgt 9709789  T
Q  162 ccgtgactgtatccgt 177  Q
    || || ||||||||||    
T  9709788 ccatgtctgtatccgt 9709773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 36878527 - 36878447
Alignment:
Q  61 tcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtc 144  Q
    ||||||| ||||||||||  ||||  |||||||||||| |||||||||  |||||||||   ||||||||||||||||||||||    
T  36878527 tcgtgtcagacaccgacacctataattacactgaattatgtgattttctcaaattatta---gcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 40181968 - 40181879
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||| |||||||||| | |||||| ||| ||||| |||||||| | |||||  |||||||||||| |||||||||  |||||||||    
T  40181968 ggattaggcgtgtcccggtgtaggacacgtgttgtgtccgacaccgatacatataattacactgaattatgtgattttctcaaattatta 40181879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 10577694 - 10577851
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcgg 126  Q
    ||||||| ||| ||||||| || || |||||  |||||||| | | |||||| |||||  ||||||| |||  ||||||||| ||||  ||||   || |    
T  10577694 cttggataaggcgtgtccccgtgtcagacacgcgtcgtgtccgcccccgacacatataattacactgcattttgtgattttctaaaaaaatta---gctg 10577790  T
Q  127 tgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatagc 187  Q
    |||||||||||| |||||| ||| ||||||| |||||||| | |||||||| ||| |||||    
T  10577791 tgtcggcgtgtcggtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcatagc 10577851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 15641040 - 15641125
Alignment:
Q  78 atatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||| |||||||||| | |||||||||  |||||||||   || |||||||| ||||||||||| |||  |||||||||||||||    
T  15641040 atatatagttacactgaatcatgtgattttcttaaattatta---gcagtgtcggcatgtcagtgtccgtgtcatgtccgatgtccgtg 15641125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 43492456 - 43492534
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttc 108  Q
    |||||||| |||| ||||| |||||||  ||| |||||||||||||||| | |||  ||||| ||||||||||||||||    
T  43492456 ggattaggcgtgtgccggtgtcggacatgtgttgtgtctgacaccgacacacataattacaccgaattacgtgattttc 43492534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 18190070 - 18190147
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    ||||||||||||||||||| |||||||| ||| |||||||||| |||||  | ||  |||||||||||| || |||||    
T  18190070 ggattaggtgtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaattatgtaatttt 18190147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 40258895 - 40258972
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    |||||||| |||||| ||| |||||||  ||||||||||||||||||||  | ||  |||||||||||| ||||||||    
T  40258895 ggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgatttt 40258972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 51410125 - 51410045
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    ||||||||||| ||||| |||| ||||| || ||||||||| ||||||||||  | ||  |||||||||||| ||||||||    
T  51410125 cttggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 51410045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 30749913 - 30749854
Alignment:
Q  54 acacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaa 113  Q
    |||||||| ||||| |||||||||| |||||  |||||||||||| ||||||||| ||||    
T  30749913 acacatgtggtgtccgacaccgacacatataattacactgaattatgtgattttctaaaa 30749854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 30771364 - 30771305
Alignment:
Q  54 acacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaa 113  Q
    |||||||| ||||| |||||||||| |||||  |||||||||||| ||||||||| ||||    
T  30771364 acacatgtggtgtccgacaccgacacatataattacactgaattatgtgattttctaaaa 30771305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 29163352 - 29163453
Alignment:
Q  39 gtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtc 138  Q
    |||||||||| || | ||| ||||||||| |||||||||| |||||  || | ||||||| |||||||||  ||||| |||   ||||||||||||||||    
T  29163352 gtgtcccggtgtcaggcacgtgtcgtgtccgacaccgacacatataattaaattgaattatgtgattttcctaaattttta---gcggtgtcggcgtgtc 29163448  T
Q  139 agtgt 143  Q
     ||||    
T  29163449 tgtgt 29163453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 32461405 - 32461463
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    ||||| |||||||||||| ||||||| || || ||||| ||||||||| ||||||||||    
T  32461405 gacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgaca 32461463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 40917765 - 40917715
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    ||||||||| |||||||||||||||| ||| ||| ||||||| ||||||||    
T  40917765 attattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 40917715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 5376545 - 5376586
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccg 157  Q
    |||||||||||||||||||||| ||||||| ||| |||||||    
T  5376545 attattagcggtgtcggcgtgttagtgtccgtgtcgtgtccg 5376586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 10572634 - 10572683
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    |||||||| ||||||||||||||||||| | ||| ||||||| |||||||    
T  10572634 attattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgt 10572683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 48040507 - 48040556
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||| | |||||||||||||||||||| ||| ||||||| |||||||    
T  48040507 attattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 48040556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 609503 - 609575
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatagcc 188  Q
    |||||||| |||||||||||||||||||   ||| |||||||||||| ||| | |||| ||| ||| ||||||    
T  609503 attattagtggtgtcggcgtgtcagtgttgatgtcgtgtccgatgtctgtgtccgtatacgtgcttcatagcc 609575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 9828152 - 9828104
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    |||||||  |||||||||| |||||||| ||||||||||||||| ||||    
T  9828152 ggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggaca 9828104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 17831576 - 17831604
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtc 144  Q
    |||||||||||||||||||||||||||||    
T  17831576 attattagcggtgtcggcgtgtcagtgtc 17831604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 28674868 - 28674808
Alignment:
Q  59 tgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||||||||| |||||||||  || ||||||||| || ||||||  |||||||||    
T  28674868 tgtcgtgtctgacaccaacatatataattatactgaattatgtaattttctcaaattatta 28674808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 39953141 - 39953220
Alignment:
Q  63 gtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtcc 145  Q
    ||||| |||||||||| ||| |  |||||| ||||| ||||||||| |||||||   |||||||||||||||| || ||||||    
T  39953141 gtgtccgacaccgacacatacaattacactaaattatgtgattttctaaaatta---ttagcggtgtcggcgtttccgtgtcc 39953220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 48548017 - 48548077
Alignment:
Q  126 gtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||||||||||| ||||| | ||||||||| |||||||| | |||||||| ||| ||||    
T  48548017 gtgtcggcgtgtcattgtccgtattgtgtccggtgtccgtgtccgtatccgtgcttcatag 48548077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 9658974 - 9658854
Alignment:
Q  32 attaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcg 131  Q
    |||||| |||| ||||| || ||||| |||||||||| ||||||||| |||||  |||||||||||| |||||||||  ||   ||||||||||||||||    
T  9658974 attaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaa---attattagcggtgtcg 9658878  T
Q  132 gcgtgtcagtgtccttgttgtgtc 155  Q
    |||||||||||||| ||| |||||    
T  9658877 gcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 34595231 - 34595098
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    ||||||||||||||||||| || ||||| ||||||||| ||||||||||  | ||  |||||||||||| ||||||||   ||   ||||||||  ||||    
T  34595231 ggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaa---attattagttgtgt 34595135  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||||| ||||| ||| ||||||| ||||||||    
T  34595134 cggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 34595098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 5732504 - 5732614
Alignment:
Q  62 cgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgt 161  Q
    |||||| |||||||||| |||||  |||||| || || |||||||||  |||||||||    |||||||||||||||||||||| ||| ||||||  |||    
T  5732504 cgtgtccgacaccgacacatataattacactaaaatatgtgattttctcaaattattaa---cggtgtcggcgtgtcagtgtccatgtcgtgtccagtgt 5732600  T
Q  162 ccgtgactgtatcc 175  Q
    ||||| ||||||||    
T  5732601 ccgtgtctgtatcc 5732614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 7938130 - 7938060
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| |||||||| | |||||||| ||| ||||    
T  7938130 attattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatccgtgcttcatag 7938060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 13851801 - 13851700
Alignment:
Q  62 cgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgt 161  Q
    |||||| |||| ||||| |||||  ||||||||||||||| ||||||  |||||||||   ||||||||| ||||||||||||| ||| |||| | ||||    
T  13851801 cgtgtcagacatcgacacatataattacactgaattacgttattttctcaaattatta---gcggtgtcgacgtgtcagtgtccgtgtcgtgttcaatgt 13851705  T
Q  162 ccgtg 166  Q
    |||||    
T  13851704 ccgtg 13851700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 28152195 - 28152084
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    ||||||||  ||||||||| |||||||| ||||||||| ||||||||||  | ||  |||||||||||| ||||||||  |||    ||||||||  |||    
T  28152195 ggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttttcaaa----ttattagctttgt 28152100  T
Q  130 cggcgtgtcagtgtcc 145  Q
    ||||||||||||||||    
T  28152099 cggcgtgtcagtgtcc 28152084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 7265588 - 7265667
Alignment:
Q  63 gtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtcc 145  Q
    ||||| |||||||||| |||||  |||||||||||| |||||||||  ||   |||||||||||||| |||||||||||||||    
T  7265588 gtgtccgacaccgacacatataattacactgaattatgtgattttctcaa---attattagcggtgttggcgtgtcagtgtcc 7265667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 19040420 - 19040341
Alignment:
Q  59 tgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagt 141  Q
    ||||||||| ||||| |||| |||||  |||||||||||| |||||||||  ||   ||||||||||||||||||||||||||    
T  19040420 tgtcgtgtccgacacagacacatataattacactgaattatgtgattttctcaa---attattagcggtgtcggcgtgtcagt 19040341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 9027236 - 9027142
Alignment:
Q  69 gacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||||| |||||  ||||| |||||| |||||| ||  |||||||||   ||||||||||||||||||||||| ||| |||||||  |||||||    
T  9027236 gacaccgacacatataattacacggaattatgtgattatctcaaattatta---gcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgtg 9027142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 16766711 - 16766652
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatcc 175  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| |||||||| | ||||||    
T  16766711 attattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatcc 16766652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 7378067 - 7377966
Alignment:
Q  39 gtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtc 138  Q
    |||||||||| |||||  ||||||||||| |||||||||| |||||  |||| ||||||| |||||||||  ||   ||| ||||||||||||| |||||    
T  7378067 gtgtcccggtgtcggatgcatgtcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaa---atttttagcggtgtcggggtgtc 7377971  T
Q  139 agtgt 143  Q
     ||||    
T  7377970 tgtgt 7377966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 8777018 - 8777088
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||  |||||||||||||||||||| ||| ||||||| |||||||| | |||||||| ||| ||||    
T  8777018 attattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgtatccgtgcttcatag 8777088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 9107415 - 9107485
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||| |||||||||||| ||||||| ||| ||||||| |||||||| | |||||||| ||| ||||    
T  9107415 attattagctgtgtcggcgtgttagtgtccgtgtcgtgtccggtgtccgtgtcagtatccgtgcttcatag 9107485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 3398633 - 3398584
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||| |||||||||||||||||||| ||| |||| ||||||||||    
T  3398633 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgt 3398584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 17841551 - 17841663
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||||| ||||| | || |||||||||||||||||| ||||||| ||  | ||  |||||| ||||| ||||||||   ||   ||||||||| ||||    
T  17841551 ggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacaccgtcacttgtaattacactaaattatgtgattttttcaa---attattagctgtgt 17841647  T
Q  130 cggcgtgtcagtgtcc 145  Q
    ||||||||||||||||    
T  17841648 cggcgtgtcagtgtcc 17841663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 9107321 - 9107369
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    ||||||||||||||||||| ||||||||| || ||||| ||||||||||    
T  9107321 ggattaggtgtgtcccggtgtcggacacacgttgtgtccgacaccgaca 9107369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 426559 - 426618
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatcc 175  Q
    ||||||| | |||||||||||||||||||| ||| ||||||| | |||||| ||||||||    
T  426559 attattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtctgtatcc 426618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 12696338 - 12696297
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccg 157  Q
    ||||||||| |||||||||||||||||||| ||| |||||||    
T  12696338 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 12696297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 18803556 - 18803613
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtat 173  Q
    |||||||||||||||||| |||||||||   ||| ||||||||||||| || ||||||    
T  18803556 attattagcggtgtcggcatgtcagtgtttgtgtcgtgtccgatgtccatgtctgtat 18803613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 24645558 - 24645501
Alignment:
Q  50 tcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    |||||||| ||||||||||||||||||||  | || ||| ||||||||| ||||||||    
T  24645558 tcggacacgtgtcgtgtctgacaccgacacttgtaactatactgaattatgtgatttt 24645501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 31959247 - 31959214
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcg 63  Q
    ||||||||||||||||||| ||||||||||||||    
T  31959247 ggattaggtgtgtcccggtgtcggacacatgtcg 31959214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 186
Target Start/End: Complemental strand, 25481979 - 25481846
Alignment:
Q  50 tcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgt 149  Q
    |||||||||| ||||||| |||||| |||  | ||  |||||||||||| ||||||||   ||   ||||||||| |||||||||||||| ||||| |||    
T  25481979 tcggacacatatcgtgtccgacaccaacacttgtaattacactgaattatgtgattttttcaa---attattagctgtgtcggcgtgtcattgtccatgt 25481883  T
Q  150 tgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||||||||||| |||||||||| ||| ||||    
T  25481882 tgtgtccgatgtccgtgtctgtatccgtgcttcatag 25481846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 598315 - 598172
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    ||||| ||| |||||||| |||||||||| |||||||| ||||||||||||||||||||  || |  |||| | |||||||||||||||  ||   ||||    
T  598315 gacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattacatttaattacgtgattttcttaa---atta 598219  T
Q  120 ttagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    ||||||||||||  |||||||||||| |||  |||| | ||||||||    
T  598218 ttagcggtgtcgatgtgtcagtgtccgtgtcatgtctggtgtccgtg 598172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 32287425 - 32287503
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttc 108  Q
    ||||||||||||||||||| |||||||| |||| |||| |||||||||| |||||  | |||||||||| |||||||||    
T  32287425 ggattaggtgtgtcccggtgtcggacacttgtcatgtccgacaccgacacatatacttgcactgaattatgtgattttc 32287503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 5835353 - 5835233
Alignment:
Q  21 acacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattat 120  Q
    |||| ||| |||||| | |||||||||| || |||||||||| ||||||||||||||| |||||  |||||||||||| || ||||||  ||   | |||    
T  5835353 acacttctcggattaagcgtgtcccggtatcagacacatgtcatgtctgacaccgacacatataattacactgaattatgttattttctcaa---actat 5835257  T
Q  121 tagcggtgtcggcgtgtcagtgtc 144  Q
    ||| ||||||||||| ||||||||    
T  5835256 tagtggtgtcggcgtatcagtgtc 5835233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 27093375 - 27093464
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||||||||  || ||||||||||||||||||| ||||||||  |||||  |||||| ||||| |||||||||  |||||||||    
T  27093375 ggattaggtgtgtcctagtgtcggacacatgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattatta 27093464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 27184926 - 27184837
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||||||||  || ||||||||||||||||||| ||||||||  |||||  |||||| ||||| |||||||||  |||||||||    
T  27184926 ggattaggtgtgtcctagtgtcggacacatgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattatta 27184837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 20549868 - 20549778
Alignment:
Q  50 tcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgt 143  Q
    |||||||  ||| ||||| |||||||||| |||||  ||||||||||||||||||||||  ||   ||||||||||||||||| ||||||||||    
T  20549868 tcggacatgtgttgtgtccgacaccgacacatataattacactgaattacgtgattttctcaa---attattagcggtgtcggtgtgtcagtgt 20549778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 22484102 - 22484011
Alignment:
Q  50 tcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtc 144  Q
    |||||||  |||| ||||||||||||||| |||||  || ||||||||| |  |||||| ||||||||||   ||||||||||||||||||||||    
T  22484102 tcggacatgtgtcatgtctgacaccgacacatataattatactgaattatgcaattttctaaaattatta---gcggtgtcggcgtgtcagtgtc 22484011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 17851488 - 17851375
Alignment:
Q  70 acaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgact 169  Q
    |||| |||| |||||  |||||||||||| ||||||||| ||||||||||   ||||| |||  ||||| || ||| ||| ||||||| |||||||| ||    
T  17851488 acacagacacatataattacactgaattatgtgattttctaaaattatta---gcggtatcgatgtgtcggtatccatgtcgtgtccggtgtccgtgtct 17851392  T
Q  170 gtatccgttcttgatag 186  Q
    |||||||| ||| ||||    
T  17851391 gtatccgtgcttcatag 17851375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 11061121 - 11061182
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgt 177  Q
    ||||||||| ||||||| |||||||||||| ||| || ||||||||||||| | ||||||||    
T  11061121 attattagctgtgtcggtgtgtcagtgtccgtgtcgtatccgatgtccgtgtccgtatccgt 11061182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 27945055 - 27945006
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    |||||||| ||||||||||||||||||||| ||| ||||||| |||||||    
T  27945055 attattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 27945006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 32308160 - 32308100
Alignment:
Q  87 tacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgtt 150  Q
    |||||||||||| |||||||||  |||||||||   ||||||||||||||||||||||| ||||    
T  32308160 tacactgaattatgtgattttctcaaattatta---gcggtgtcggcgtgtcagtgtccatgtt 32308100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 2948739 - 2948672
Alignment:
Q  71 caccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagt 141  Q
    |||||||| |||||  |||||| ||||||||||||||| |||   ||||| ||||||||||||||||||||    
T  2948739 caccgacacatataattacactaaattacgtgattttctaaa---attatcagcggtgtcggcgtgtcagt 2948672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 13770705 - 13770657
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccg 164  Q
    ||||||||| |||||||||| ||||||||| ||| ||||||||||||||    
T  13770705 attattagctgtgtcggcgtatcagtgtccgtgtcgtgtccgatgtccg 13770657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 22868082 - 22868015
Alignment:
Q  87 tacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccg 157  Q
    |||||||||||| |||||||||  |   ||||||||| ||||||||||||||||||||  |||||||||||    
T  22868082 tacactgaattatgtgattttctca---tattattagtggtgtcggcgtgtcagtgtcggtgttgtgtccg 22868015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 26033412 - 26033460
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    |||||||||||||| |||| |||||||| |||| |||||||||||||||    
T  26033412 ggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgaca 26033460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 39138510 - 39138458
Alignment:
Q  61 tcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaa 113  Q
    ||||||| ||||||||||||||||  |||||||||||| ||||||||| ||||    
T  39138510 tcgtgtccgacaccgacatatataattacactgaattatgtgattttctaaaa 39138458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 21880259 - 21880160
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    ||||| ||| |||||||| |||||| ||| |||||||  ||||||||| ||||||||||  | ||  |||||||||||| || ||||||  |||||||||    
T  21880259 gacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaattatta 21880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 43027426 - 43027469
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacac 73  Q
    |||||||| |||||||||| |||||||| |||||||||||||||    
T  43027426 ggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacac 43027469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 1433468 - 1433398
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||| |||||||||||||||| ||||| ||| |||| || |||||||| | |||||||| ||| ||||    
T  1433468 attattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgtgcccgtatccgtgcttcatag 1433398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 11722147 - 11722193
Alignment:
Q  120 ttagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  11722147 ttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtg 11722193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 12278932 - 12278797
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcg-tgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcg--- 125  Q
    ||||||||||||||||||| || |||||  || | |||| ||||| |||| |||||  |||||||||||| || ||||||  |||||||||| || |       
T  12278932 ggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacac-gacacatataattacactgaattatgtcattttcttaaattattatcagtgttg 12278834  T
Q  126 gtgtcggcgtgtcagtgtccttgttgtgtccgatgtc 162  Q
    |||| ||| ||||||||||| ||| ||||||||||||    
T  12278833 gtgttggcttgtcagtgtccgtgtcgtgtccgatgtc 12278797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 1401119 - 1401033
Alignment:
Q  31 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||||||||| | |||||||  ||||||||| |||||||| |  ||||  |||||||||||| |||| ||||  |||||||||    
T  1401119 gattaggtgtgtcccgatgtcggaca--tgtcgtgtcggacaccgatacttataattacactgaattatgtgagtttctcaaattatta 1401033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 5236000 - 5235951
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    |||||||||||||||| ||||||||||||  ||| |||||| ||||||||    
T  5236000 attattagcggtgtcgacgtgtcagtgtctgtgtcgtgtccaatgtccgt 5235951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 24105692 - 24105651
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccg 157  Q
    ||||||||| |||||||||||||||||||| ||| |||||||    
T  24105692 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 24105651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 24339656 - 24339607
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||| |||||||||||||| ||||| ||| ||||||| |||||||    
T  24339656 attattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtccgt 24339607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 29787388 - 29787455
Alignment:
Q  87 tacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccg 157  Q
    |||||||||||| |||||||||  ||||||   |||||||||||||||||| | ||||| |||||| ||||    
T  29787388 tacactgaattatgtgattttctcaaatta---ttagcggtgtcggcgtgttaatgtccgtgttgtatccg 29787455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 23292948 - 23293081
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||||| |||||||||| |||||||| ||||||||| ||||||||||  | ||  || ||||||||| ||||||||   |||||||||   || ||||    
T  23292948 ggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaattatgtgattttttcaaattatta---gctgtgt 23293044  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||||| ||||| ||| ||||||| ||||||||    
T  23293045 cggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 23293081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 8423681 - 8423769
Alignment:
Q  31 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    ||||||| |||||||||| |||||||  ||||||||| ||||||||||| ||||  |||||||||||| |||||||||  |||||||||    
T  8423681 gattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaattatgtgattttctcaaattatta 8423769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 35157937 - 35158091
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    ||||| ||| |||||| | |||| ||||| | |||||  ||||||||| ||||||||||  ||||  |||||| ||||| ||||||||   |||||||||    
T  35157937 gacacttctcggattaagcgtgttccggtgttggacatgtgtcgtgtcagacaccgacacttataattacactaaattatgtgatttttccaaattatta 35158036  T
Q  120 ttagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgt 177  Q
     | |||   ||||||||||||||||| ||||||||||| |||||||| | ||||||||    
T  35158037 gttgcg---tcggcgtgtcagtgtccgtgttgtgtccggtgtccgtgtccgtatccgt 35158091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 30982827 - 30982877
Alignment:
Q  28 ttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    |||||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  30982827 ttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgaca 30982877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 12895236 - 12895368
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||||| |||||||| | ||||| |||||||||||| ||||||||||  ||||  |||||  ||||| ||||||||   |||||||||||    ||||    
T  12895236 ggattaggcgtgtcccgatgtcggatacatgtcgtgtccgacaccgacacttataattacacaaaattatgtgattttttcaaattattatt---tgtgt 12895332  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    |||||||||| ||| | ||| || |||| |||||||    
T  12895333 cggcgtgtcattgttcgtgtcgtatccggtgtccgt 12895368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 49431123 - 49430990
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||| ||| |||||||||| | |||||| ||||||||| ||||||||||  | ||  |||||||||||| ||||||||    ||  ||||||||| ||||    
T  49431123 ggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaattatgtgatttttttcaa--attattagctgtgt 49431026  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||||| |||||  || ||||||| ||||||||    
T  49431025 cggcgtgtcactgtccgagtcgtgtccg-tgtccgtg 49430990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 9996936 - 9996849
Alignment:
Q  31 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatt 118  Q
    |||||||||||| || || |||||||| |||  ||||||||||||| | |||||  || ||||||||| |||||||||  ||||||||    
T  9996936 gattaggtgtgttccagtgtcggacacgtgttatgtctgacaccgagacatataattatactgaattatgtgattttctcaaattatt 9996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 20633499 - 20633428
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatagc 187  Q
    |||||||||||||||| ||||||||||||| | | ||||| | |||||||| | |||||||| ||| |||||    
T  20633499 attattagcggtgtcgacgtgtcagtgtccgtatcgtgtctggtgtccgtgtccgtatccgtgcttcatagc 20633428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 904034 - 903984
Alignment:
Q  26 tcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccga 76  Q
    ||||||||||| |||||||| || ||||||||||||||||||  |||||||    
T  904034 tcttggattagatgtgtcccagtgtcggacacatgtcgtgtccaacaccga 903984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 4672086 - 4672136
Alignment:
Q  69 gacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||| ||||||||||||||||||| || ||||||  |||||||||    
T  4672086 gacaccgacacatatagctacactgaattatgtaattttcccaaattatta 4672136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 35161133 - 35161055
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttc 108  Q
    ||||||||||||| ||||| |||||||| ||||||||| ||| | || |  ||||  |||||||||||| |||||||||    
T  35161133 ggattaggtgtgttccggtgtcggacacgtgtcgtgtccgactctgatacttataattacactgaattatgtgattttc 35161055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 17345460 - 17345489
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtcc 145  Q
    ||||||||||||||||||||||||||||||    
T  17345460 attattagcggtgtcggcgtgtcagtgtcc 17345489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 24343547 - 24343451
Alignment:
Q  87 tacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||||||||| || ||||||  ||||||||||   | ||||||||||||| | |||| ||| ||||||| |||||||| |||| ||||| ||| ||||    
T  24343547 tacactgaattatgtaattttctcaaattattat---ccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcatag 24343451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 21873426 - 21873478
Alignment:
Q  134 gtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||||||||| ||| |||||| ||||||||| |||||||||| ||| ||||    
T  21873426 gtgtcagtgtccgtgtcgtgtccaatgtccgtgtctgtatccgtgcttaatag 21873478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 21929287 - 21929339
Alignment:
Q  134 gtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||||||||| ||| |||||| ||||||||| |||||||||| ||| ||||    
T  21929287 gtgtcagtgtccgtgtcgtgtccaatgtccgtgtctgtatccgtgcttaatag 21929339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 35723430 - 35723458
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtc 144  Q
    |||||||||||||||||||||||||||||    
T  35723430 attattagcggtgtcggcgtgtcagtgtc 35723458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 54580006 - 54580062
Alignment:
Q  51 cggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    ||||||| ||||||||| ||||||||||  ||||  |||||||||||| ||||||||    
T  54580006 cggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgtgatttt 54580062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 18427045 - 18426934
Alignment:
Q  31 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtc 130  Q
    ||||||||||||||||||  ||||||| |||||| || ||||||||||||||||  ||||| |||||| ||||||||   ||   |||||||| ||||||    
T  18427045 gattaggtgtgtcccggtgccggacacgtgtcgtatccgacaccgacatatataattacaccgaattatgtgattttttgaa---attattagtggtgtc 18426949  T
Q  131 ggcgtgtcagtgtcc 145  Q
    |||||||| ||||||    
T  18426948 ggcgtgtccgtgtcc 18426934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 8842397 - 8842295
Alignment:
Q  59 tgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccga 158  Q
    ||||||||||||||||||||||||||  |||||  ||||| ||||||||||||    |||||||||||||||||| ||||| | ||| ||| || ||||     
T  8842397 tgtcgtgtctgacaccgacatatataattacaccaaattatgtgattttcaaa----attattagcggtgtcggcatgtcaatttccgtgtcgtatccgg 8842302  T
Q  159 tgtccgt 165  Q
    |||||||    
T  8842301 tgtccgt 8842295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 40993297 - 40993374
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    |||||||| |||||||||| |||||||  ||||||||| |||||||||| |||||  |||||||||||| ||||||||    
T  40993297 ggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgatttt 40993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 4466571 - 4466694
Alignment:
Q  39 gtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtc 138  Q
    ||||||| || |||||||||| | || || ||||||| || |||||||||||||||||||  ||||||||  ||   ||||||| ||||||||| |||||    
T  4466571 gtgtcccagtgtcggacacatcttgtatccgacaccggcacatatagctacactgaattatatgattttcttaa---attattaccggtgtcggagtgtc 4466667  T
Q  139 agtgtccttgttgtgtccgatgtccgt 165  Q
    ||||| | |||  |||||| |||||||    
T  4466668 agtgttcgtgtcatgtccggtgtccgt 4466694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 23657836 - 23657768
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaatta 98  Q
    ||||||||||||||||||| ||||||| ||||| |||| |||||||| || ||||  ||||||||||||    
T  23657836 ggattaggtgtgtcccggtatcggacaaatgtcatgtccgacaccgatatttataattacactgaatta 23657768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 28918103 - 28917965
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtc--tgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagc 124  Q
    ||||||||||| ||||||| || |||||||| |||||||||   ||||||||||  | ||  |||||||||||| ||||||||   ||   |||||||||    
T  28918103 cttggattaggcgtgtcccagtgtcggacacgtgtcgtgtccacgacaccgacacttgtaattacactgaattatgtgattttttcaa---attattagc 28918007  T
Q  125 ggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
      ||||||||||||||| ||| ||| ||||||| ||||||||    
T  28918006 tatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgtg 28917965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 8383322 - 8383221
Alignment:
Q  62 cgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgt 161  Q
    |||||| ||||||||||  ||||  ||||||||||||  ||||||||  |||||||||   ||||||||||||||||| ||||| ||| ||||||  |||    
T  8383322 cgtgtccgacaccgacacttataattacactgaattatatgattttctcaaattatta---gcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgt 8383226  T
Q  162 ccgtg 166  Q
    |||||    
T  8383225 ccgtg 8383221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 24205086 - 24205156
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||| | |||||||||||||||||||| ||| ||||||| |||||||| |||| ||||| ||| ||||    
T  24205086 attattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcatag 24205156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 38731276 - 38731182
Alignment:
Q  69 gacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||||| ||||| ||||||||||||| ||||||||  |||   |||||||||||| ||| | |||| |||| | ||| ||||||| ||||||||    
T  38731276 gacaccgacacatataactacactgaattatgtgattttttaaa---attattagcggtatcgacatgtcggtgtacatgtcgtgtccgttgtccgtg 38731182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 10335331 - 10335381
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    ||||||||  |||||||||||||||||||| ||| ||||||| ||||||||    
T  10335331 attattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 10335381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 14209231 - 14209173
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    ||||| ||||||||||||||| ||||| | ||| |||| ||||||||| ||||||||||    
T  14209231 gacacttcttggattaggtgtatcccgatgtcgtacacgtgtcgtgtccgacaccgaca 14209173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 3164044 - 3164140
Alignment:
Q  87 tacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||||||||| ||||||||   ||   ||||||||| |||||| |||| || ||||| ||| ||||||| |||||||| |||||||||| ||| ||||    
T  3164044 tacactgaattatgtgattttttcaa---attattagctgtgtcgacgtgccattgtccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcatag 3164140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 11610562 - 11610486
Alignment:
Q  86 ctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||||||| ||||||||   ||   |||||||||||||| ||||||||||| ||  ||||||||| |||||||||    
T  11610562 ctacactgaattatgtgatttttttaa---attattagcggtgttggcgtgtcagtatctgtgttgtgtctgatgtccgt 11610486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 14134794 - 14134707
Alignment:
Q  32 attaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||| |||||| |||  ||||||| |||||||| |||||||||||||||||  |||||||||||| |||||||||  |||||||||    
T  14134794 attaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccgacatatataattacactgaattatgtgattttctcaaattatta 14134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 4786324 - 4786411
Alignment:
Q  54 acacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtc 144  Q
    ||||||||||| || |||||||||| |||||  |||||||||||| |||||||||  ||||||||| |   ||||||||||||||||||||    
T  4786324 acacatgtcgtatccgacaccgacacatataattacactgaattatgtgattttcttaaattattaat---ggtgtcggcgtgtcagtgtc 4786411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 31557096 - 31556962
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcgg 126  Q
    ||||||||||| |||||| ||| |||||||  |||||||||||||||||| |  | ||  |||||||||||| ||||||||  ||    ||||||| | |    
T  31557096 cttggattaggcgtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacactgaattatgtgatttttcaa----attattaactg 31557001  T
Q  127 tgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    |||||||||||||||| || |||  |||||| |||||||    
T  31557000 tgtcggcgtgtcagtgaccatgtcatgtccggtgtccgt 31556962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 22651990 - 22651919
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatagc 187  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| |||| ||| | |||||||| ||| |||||    
T  22651990 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcagtgtccgtatccgtacttcatagc 22651919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 29447542 - 29447504
Alignment:
Q  40 tgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  29447542 tgtcccggtgtcggacacatgtcgtgtctgacaccgaca 29447504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 29510349 - 29510419
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| ||||| || | |||||||| ||| ||||    
T  29510349 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccatgtcagtatccgtgcttcatag 29510419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 25192392 - 25192441
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||| |||||||||||||||||||| | | |||||||||||||||    
T  25192392 attattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgt 25192441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 3951495 - 3951575
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    ||||||||||| |||| || || || ||||| |||||||||||||||||||| |||||  ||||||| |||  ||||||||    
T  3951495 cttggattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacaccgacacatataagtacactgcattttgtgatttt 3951575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 20679366 - 20679446
Alignment:
Q  39 gtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||| |||||||| ||| | ||||||||||||||  ||||  ||||||||| || |||||||||  |||||||||    
T  20679366 gtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacactgaactatgtgattttctcaaattatta 20679446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 22652084 - 22652036
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    |||||||  |||||||||| |||||||||||||||||| ||||||||||    
T  22652084 ggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgaca 22652036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 29510255 - 29510303
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    ||||||||||||||||||| ||||||||  |||||||| ||||||||||    
T  29510255 ggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgaca 29510303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 8293922 - 8293848
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgat 104  Q
    ||||||||||||||| ||| || || |  |||| ||| ||||||||||| |||||  ||||||||||||||||||    
T  8293922 ggattaggtgtgtccaggtgtcagatatgtgtcatgtttgacaccgacacatataattacactgaattacgtgat 8293848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 4673470 - 4673519
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||| | |||||||||||||||||||  ||| |||||||||||||||    
T  4673470 attattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgt 4673519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 29447061 - 29447110
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacat 79  Q
    |||||||| |||||| ||| || ||||||||||||||| |||||||||||    
T  29447061 ggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgacat 29447110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 34897149 - 34897070
Alignment:
Q  63 gtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtcc 145  Q
    ||||| |||| ||||| |||||  |||||||||||| |||||||||  ||   |||||||||||||||| |||||| ||||||    
T  34897149 gtgtccgacatcgacacatataattacactgaattatgtgattttctcaa---attattagcggtgtcgacgtgtctgtgtcc 34897070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 40332288 - 40332200
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatt 118  Q
    |||||||| | |||||||| | |||||| |||||||||  |||||||||  | ||  |||||||||||| |||||||||  ||||||||    
T  40332288 ggattaggcgcgtcccggtgtgggacacgtgtcgtgtcccacaccgacacttgtaattacactgaattatgtgattttctcaaattatt 40332200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 424 - 568
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    ||||||||||||||||||| ||||||||  |||||||| ||||||||||  | ||  |||||||||||  ||||||||   ||   ||||||||| ||||    
T  424 ggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaattttgtgattttttcaa---attattagcagtgt 520  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgt 177  Q
    |||||| ||||||||| ||  |||| || |||||||| | ||||||||    
T  521 cggcgtatcagtgtccgtggcgtgttcggtgtccgtgtccgtatccgt 568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 30502347 - 30502439
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||||  |||||| || |||||||  ||||||||| |||||||||| |||||  |||||||||||| |||||||||  |||||||||    
T  30502347 cttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattatta 30502439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 30542690 - 30542782
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||||  |||||| || |||||||  ||||||||| |||||||||| |||||  |||||||||||| |||||||||  |||||||||    
T  30542690 cttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattatta 30542782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 43564988 - 43564901
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    ||||| ||| |||||||| |||||||||  |||||||||||||||||| ||||||||||  ||||  |||||| ||||| ||||||||    
T  43564988 gacacttctcggattaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttataattacactaaattatgtgatttt 43564901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 17123144 - 17123012
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||||| |||||||| | |||||||  | |||||||  |||||||||||||||  |  |||  |||| |||||||||  ||   ||||||||||||||    
T  17123144 ggattaggcgtgtcccg-tgtcggacatgtttcgtgtccaacaccgacatatataattgtacttgattatgtgattttctcaa---attattagcggtgt 17123049  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
     ||||||||||||||| |||| |||||||||||||||    
T  17123048 tggcgtgtcagtgtccatgttatgtccgatgtccgtg 17123012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 21191018 - 21191147
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||||| |||||||||  |||||||| ||| ||||| ||||||||||  | ||  |||||||||||| ||||||||   ||   ||||||||| ||||    
T  21191018 ggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaa---attattagctgtgt 21191114  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtc 162  Q
    |||| ||||||||||| ||| ||||||| ||||    
T  21191115 cggcatgtcagtgtccgtgtcgtgtccggtgtc 21191147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 15410493 - 15410540
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtcc 163  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  15410493 attattagcggtgtcggcgtgtcagtgtccgtgtcgtgtctgatgtcc 15410540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 15382491 - 15382421
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||| |||||||||||||| ||||| ||| ||||||| |||||||| | |||||||| ||| ||||    
T  15382491 attattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcatag 15382421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 21137703 - 21137653
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    ||||||| || ||||||||||||||||||| ||||||||||| ||||||||    
T  21137703 attattaccgatgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtg 21137653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 21522764 - 21522694
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| || ||||| | |||||||| ||| ||||    
T  21522764 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtgcttcatag 21522694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 21533330 - 21533260
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| || ||||| | |||||||| ||| ||||    
T  21533330 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtgcttcatag 21533260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 19820439 - 19820488
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||||||||||| |||||||||||| ||| ||||||| |||||||    
T  19820439 attattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgt 19820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 22013428 - 22013379
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| |||||||    
T  22013428 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 22013379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 26312866 - 26312734
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    ||||||||||||||| ||| || ||||| | ||||||| |||||||| | |||||  ||||||||||||  ||||||||  ||   |||||| ||||| |    
T  26312866 ggattaggtgtgtcctggtgtcagacacgtatcgtgtccgacaccgatacatataattacactgaattaattgattttctcaa---attatttgcggtat 26312770  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    |||| | ||||||||| ||| ||||||  |||||||    
T  26312769 cggcatatcagtgtccatgtcgtgtccagtgtccgt 26312734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 3966561 - 3966488
Alignment:
Q  69 gacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtcc 145  Q
    |||||||||| |||||  |||||||||||  |||||||||  |||||||||   ||||||||||| |||||||||||    
T  3966561 gacaccgacacatataattacactgaattgtgtgattttctcaaattatta---gcggtgtcggcatgtcagtgtcc 3966488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 13287400 - 13287505
Alignment:
Q  69 gacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgac 168  Q
    ||||||||||  | ||| |||||||||||| ||||||||   ||||||||||   | |||||| ||||| ||||||| ||| ||||||| |||||||| |    
T  13287400 gacaccgacacttgtagttacactgaattatgtgattttttcaaattattat---ctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgtgtc 13287496  T
Q  169 tgtatccgt 177  Q
     ||||||||    
T  13287497 cgtatccgt 13287505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 28588665 - 28588742
Alignment:
Q  59 tgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtca 139  Q
    ||||||||| ||||||||||  ||||  |||||||||||| |||||||||  ||   ||||||| ||||||||||||||||    
T  28588665 tgtcgtgtccgacaccgacacctataattacactgaattatgtgattttctcaa---attattaccggtgtcggcgtgtca 28588742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 6035497 - 6035464
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgt 149  Q
    ||||||||||||||||||||||||||||| ||||    
T  6035497 attattagcggtgtcggcgtgtcagtgtctttgt 6035464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 39268560 - 39268613
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatat 83  Q
    |||||||| ||||||| || ||||||||||||||||||  ||||||||| ||||    
T  39268560 ggattaggcgtgtcccagtgtcggacacatgtcgtgtccaacaccgacacatat 39268613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 2436936 - 2436908
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtc 144  Q
    |||||||||||||||||||||||||||||    
T  2436936 attattagcggtgtcggcgtgtcagtgtc 2436908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 6401502 - 6401442
Alignment:
Q  126 gtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||||||| |||||| ||| | ||||| |||||||| |||||||||| ||| ||||    
T  6401502 gtgtcggcgtgtcggtgtccgtgtcgcgtccggtgtccgtgtctgtatccgtgcttcatag 6401442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 17593725 - 17593773
Alignment:
Q  71 caccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||| |||||||||  ||||||||||||||||||||||  |||||||||    
T  17593725 caccaacatatataattacactgaattacgtgattttctcaaattatta 17593773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 27144477 - 27144449
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtc 144  Q
    |||||||||||||||||||||||||||||    
T  27144477 attattagcggtgtcggcgtgtcagtgtc 27144449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 39698649 - 39698601
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    |||||||| ||||| |||| ||||| |||||||||||| ||||||||||    
T  39698649 ggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgaca 39698601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 8894 - 8753
Alignment:
Q  31 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtc 130  Q
    ||||||| ||||| |||| |||||||| ||||||||| ||||||||||  | ||  |||||| ||| |  |||||||   |||||||||   || |||||    
T  8894 gattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaataatatgattttttcaaattatta---gctgtgtc 8798  T
Q  131 ggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatcc 175  Q
    ||||||||||||||| ||| ||||||| |||||||| | ||||||    
T  8797 ggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatcc 8753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 18276582 - 18276474
Alignment:
Q  66 tctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||||||| | |||  |||||||||||| |||||||||  |||||||||   ||||||||||| | ||||||||  | | ||||||| |||||||    
T  18276582 tctgacaccgacacacataattacactgaattaagtgattttctcaaattatta---gcggtgtcggcatatcagtgtctgtatcgtgtccggtgtccgt 18276486  T
Q  166 gactgtatccgt 177  Q
    | ||||||||||    
T  18276485 gtctgtatccgt 18276474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 18840975 - 18841099
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    ||||||||||||||||||| |||||||  ||||||||||||||||||||  | ||  |||||| ||||| || |||||   ||   ||||||||  ||||    
T  18840975 ggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacacttaattatgtaattttttcaa---attattagttgtgt 18841071  T
Q  130 cggcgtgtcagtgtccttgttgtgtccg 157  Q
    | |||||||||||||| ||| |||||||    
T  18841072 cagcgtgtcagtgtccatgtcgtgtccg 18841099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 5367292 - 5367200
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    ||||||||||| |||||||||  ||||| |  ||||||||| |||||||||| |||||  |||||||||||| ||||||| |  |||||||||    
T  5367292 cttggattaggcgtgtcccggagtcggatatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgatttcctcaaattatta 5367200  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 31808176 - 31808063
Alignment:
Q  28 ttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggt 127  Q
    ||||||||||||||||| ||| ||| |||  ||||||||   |||| |||| |||||  |||||||||||| ||||||||   ||   ||||||||||||    
T  31808176 ttggattaggtgtgtccaggtgtcgaacatgtgtcgtgttcaacactgacacatataattacactgaattatgtgattttgttaa---attattagcggt 31808080  T
Q  128 gtcggcgtgtcagtgtc 144  Q
    ||||| |||||||||||    
T  31808079 gtcggtgtgtcagtgtc 31808063  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 2438681 - 2438758
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    |||||||| |||||||||| |||||||  ||||||||| ||||||||||  | ||  |||||||||||| ||||||||    
T  2438681 ggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 2438758  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 15972970 - 15972858
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    ||||||||||||||||||  |||||||| ||||||||| ||||||||||  | ||  |||||||||||  || |||||   ||||||||| |    ||||    
T  15972970 ggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattgtgtaattttttcaaattattaat---tgtgt 15972874  T
Q  130 cggcgtgtcagtgtcc 145  Q
    ||||||||||||||||    
T  15972873 cggcgtgtcagtgtcc 15972858  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 5040834 - 5040754
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    |||||| |||| |||||||||  |||||||||||||||||| ||||||||||  | ||  |||| ||||||| ||||||||    
T  5040834 cttggactaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttgtaattacattgaattatgtgatttt 5040754  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 20242712 - 20242811
Alignment:
Q  53 gacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgt 152  Q
    ||||| ||| ||||| |||||||||| |||||  |||||||||||| ||||||||| |||   |  |||||  |||||||||||||||||||| ||| ||    
T  20242712 gacacgtgttgtgtccgacaccgacacatataattacactgaattatgtgattttctaaa---aaaattagttgtgtcggcgtgtcagtgtccatgtcgt 20242808  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 21616802 - 21616737
Alignment:
Q  87 tacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtc 155  Q
    |||||||||||| |||||||||  |||||||||   |||||||||||||||| |||||| ||| |||||    
T  21616802 tacactgaattatgtgattttctcaaattatta---gcggtgtcggcgtgtccgtgtccgtgtcgtgtc 21616737  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 21091816 - 21091696
Alignment:
Q  34 taggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggc 133  Q
    ||||||||||||||| || ||||  || | |||||||||| ||||  | ||  ||||||||| || || ||||||  ||   |||||||||||||||||     
T  21091816 taggtgtgtcccggtgtccgacaggtggcttgtctgacactgacacttgtaattacactgaagtatgttattttcttaa---attattagcggtgtcggt 21091720  T
Q  134 gtgtcagtgtccttgttgtgtccg 157  Q
    |||||||||||| | |||||||||    
T  21091719 gtgtcagtgtccgtcttgtgtccg 21091696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 37559074 - 37558962
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||| | |||| ||||| |||||||| ||||  ||| ||||||||||  | ||  |||| ||||||| |||||||| | |||||||||   || ||||    
T  37559074 ggattaagcgtgtaccggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaattatgtgatttttacaaattatta---gctgtgt 37558978  T
Q  130 cggcgtgtcagtgtcc 145  Q
    ||||||||||||||||    
T  37558977 cggcgtgtcagtgtcc 37558962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 23718082 - 23718011
Alignment:
Q  71 caccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtcc 145  Q
    |||||||| |||||  |||||||||||| |||| ||||  |||||||||   |||||||||| ||||||||||||    
T  23718082 caccgacacatataattacactgaattatgtgactttctcaaattatta---gcggtgtcggtgtgtcagtgtcc 23718011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 24105754 - 24105683
Alignment:
Q  71 caccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtcc 145  Q
    |||||||| |||||  |||||||||||| |||| ||||  |||||||||   |||||||||| ||||||||||||    
T  24105754 caccgacacatataattacactgaattatgtgactttctcaaattatta---gcggtgtcggtgtgtcagtgtcc 24105683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 37411210 - 37411313
Alignment:
Q  34 taggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggc 133  Q
    |||| ||||||| || ||||||||  |||||||  |||| ||||| |||||   ||||||||||| |||||||||  ||   ||||||||||||||||||    
T  37411210 taggcgtgtcccagtgtcggacacgcgtcgtgttcgacatcgacacatataatcacactgaattatgtgattttctcaa---attattagcggtgtcggc 37411306  T
Q  134 gtgtcag 140  Q
     ||||||    
T  37411307 atgtcag 37411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 46740 - 46626
Alignment:
Q  69 gacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgac 168  Q
    ||||||||||| | ||  |||||||||||| ||||||||   |||||||||    | |||||||||||||| ||||| ||| |||||||||||||||| |    
T  46740 gacaccgacatttgtaattacactgaattatgtgattttttcaaattattaa---ctgtgtcggcgtgtcattgtccgtgtcgtgtccgatgtccgtgtc 46644  T
Q  169 tgtatccgttcttgatag 186  Q
     |||||||| ||| ||||    
T  46643 cgtatccgtgcttcatag 46626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 90942 - 90851
Alignment:
Q  28 ttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||| ||||   ||| |||||||| ||| |||||||||| |||||||||||  ||||||||||||  ||||||||  |||||||||    
T  90942 ttggattaggcgtgttttggtgtcggacacgtgttgtgtctgacatcgacatatataattacactgaattatatgattttctcaaattatta 90851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 241608 - 241558
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| ||||||||    
T  241608 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 241558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 225313 - 225374
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgt 177  Q
    ||||||| | |||||||||||||||||||| ||| ||||||| |||||||| |||| |||||    
T  225313 attattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgt 225374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 9909 - 9842
Alignment:
Q  119 attagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||| ||||||||||||| |||||| ||| ||||||| |||||||| | |||||||| ||| ||||    
T  9909 attagctgtgtcggcgtgtcggtgtccatgtcgtgtccggtgtccgtgtccgtatccgtgcttcatag 9842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 20186 - 20137
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||| |||||||||||||| ||||| ||| ||||||| |||||||    
T  20186 attattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 20137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 70375 - 70298
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    ||||||||  ||||| ||| |||||||| ||||||||| ||||||||||  ||||  |||||||||||| || |||||    
T  70375 ggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgttatttt 70298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 92821 - 92792
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtcc 145  Q
    ||||||||||||||||||||||||||||||    
T  92821 attattagcggtgtcggcgtgtcagtgtcc 92792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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