View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12673_low_1 (Length: 795)
Name: NF12673_low_1
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12673_low_1 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0054 (2 HSPs) |
| | |
|
| [»] scaffold1720 (1 HSPs) |
| | |
|
| [»] scaffold0022 (2 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 732; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 732; E-Value: 0
Query Start/End: Original strand, 1 - 780
Target Start/End: Original strand, 17019488 - 17020266
Alignment:
| Q |
1 |
aaacaagaattacatctattttggcttcaaccacctcttttggtttctacccaaaactttgaatatcaaggcaactattgccaaatttcaccatttgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17019488 |
aaacaagaattacatctattttggcttcaaccacctcttttggtttctacccaaaactttgaatatcaagacaactattgccaaatttcaccatttgatt |
17019587 |
T |
|
| Q |
101 |
ttcaattagggaccataaaaattccttatcatcaatacaatcaaatttatggtcaattgaccattatttcctgaagcttcaaacctaagtatttcaatag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17019588 |
ttcaattagggaccataaaaattccttatcacaaatacaatcaaatttatggccaattgaccattatttcctgaagcttcaaacctaagtatt-caatag |
17019686 |
T |
|
| Q |
201 |
tatttttatttatggtctcttaaccatcttttgctaactgccagccactaaggccttcttaatctcatgctccggctaaacaaccgtgattttggtataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17019687 |
tatttttatttatggtctcttaaccatctttttctaactgccagccactaaggccttcttaatctcatgctccggctaaacaaccgtgattttggtataa |
17019786 |
T |
|
| Q |
301 |
gcattttgcttagatgtgatgatcatcctcatcattccctaaggttagggaacttagattttccacattcggtcctatgtcaagagtctggtcttaacgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17019787 |
gcattttgcttagatgtgatgatcatcctcatcattccctaaggttagggaacttagattttccacattcggtcctatgtcaagagtctggtcttaacgg |
17019886 |
T |
|
| Q |
401 |
cttgcagcaatgcctttttgaacctctggtaccttctccatggagtccttgtcatgggggtcttccccttgtaattgttgttgtaagcaaacttctttga |
500 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17019887 |
cttgaagcaatgcctttttgaacctctggtaccttctccattgagtccttgtcatgggggtcttccccttgtaattgctgttgtaagcaaacttctttga |
17019986 |
T |
|
| Q |
501 |
cgcaaaggcatcaccatttttgttatcaacaattctggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaacccac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17019987 |
cgcaaaggcatcaccatttttgttatcaacaattatggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaacccac |
17020086 |
T |
|
| Q |
601 |
tttgtatcacgtgcacaaggaacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttag |
700 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17020087 |
tttgtatcaggtgcacaaggaacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttag |
17020186 |
T |
|
| Q |
701 |
taaaggaaaacttaggtttatgatcatcgaaccatttccctcttttcttaggttttgggatagaactttcaaggcctttg |
780 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17020187 |
taaaggaaaacttaggtttatgatcatcgaaccatttccctcttttcttaggttttgggatagaactttcaaggcctttg |
17020266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 520 - 779
Target Start/End: Complemental strand, 21312329 - 21312070
Alignment:
| Q |
520 |
ttgttatcaacaattctggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaacccactttgtatcacgtgcacaag |
619 |
Q |
| |
|
|||||||| |||| || ||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| | ||||| ||| |
|
|
| T |
21312329 |
ttgttatccacaacacttgtgtttcttttcaccacattgttcttcccatgctgcacattcttatgggtcgactgaacccatttttggttgggtgcataag |
21312230 |
T |
|
| Q |
620 |
gaacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggttt |
719 |
Q |
| |
|
| || |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
21312229 |
ggactaaagcttttccttgaccactttgattgacataattggtggtcgaagagttattgatgaaaggaatataactctttgtaaaggaaaacttaggtct |
21312130 |
T |
|
| Q |
720 |
atgatcatcgaaccatttccctcttttcttaggttttgggatagaactttcaaggccttt |
779 |
Q |
| |
|
||||||| | ||||||||||| |||||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
21312129 |
atgatcaccataccatttccctattttcttaggatttgggatagaaccttcgaggccttt |
21312070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 422 - 766
Target Start/End: Complemental strand, 18217921 - 18217574
Alignment:
| Q |
422 |
acctctggtaccttctccatggagtccttgtcatgggggtcttccccttgtaattgttgttgtaagcaaacttctttgacgcaaaggcatcaccattttt |
521 |
Q |
| |
|
||||||||||||| |||||| |||| |||||||| || | || |||||||| || | | |||||| ||||||| ||| |||||||| ||||||||| |
|
|
| T |
18217921 |
acctctggtacctcctccattgagttcttgtcataggattatttcccttgtagtttcttctataagcatacttcttcgactcaaaggcagtaccattttt |
18217822 |
T |
|
| Q |
522 |
gtt---atcaacaattctggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaacccactttgtatcacgtgcacaa |
618 |
Q |
| |
|
||| ||| |||| || ||||||| |||||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||| | ||||| || |
|
|
| T |
18217821 |
gttgttatccacaacacttgtgtttcctttcaccatattgttcttcccatgttgcacattcttgtgggtcgactgaacccatttttggtttggtgcataa |
18217722 |
T |
|
| Q |
619 |
ggaacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggtt |
718 |
Q |
| |
|
| || |||| |||||| |||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
18217721 |
gtgaccaaagtttttccctgaccactttgattgacataattggtggtcgaagagttattgatgaaaggaatataactctttgtaaaagaacacttaggtc |
18217622 |
T |
|
| Q |
719 |
tatgatcatcgaaccatttccctcttttcttaggttttgggatagaac |
766 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18217621 |
tatgatcagcagaccatttcccccttttcttaggttttgggatagaac |
18217574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 220 - 352
Target Start/End: Original strand, 4598290 - 4598423
Alignment:
| Q |
220 |
ttaaccatcttttgctaactgccagccactaaggccttcttaatctcatgctccggctaa-acaaccgtgattttggtataagcattttgcttagatgtg |
318 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||| || |||||| |||| ||||| |||||||||||| | |||||| ||||||||||||| |
|
|
| T |
4598290 |
ttaaccatctttttataagtaccagccactaaggcctttttgatctcacactccagctaacacaaccgtgattcaattctaagcaccttgcttagatgtg |
4598389 |
T |
|
| Q |
319 |
atgatcatcctcatcattccctaaggttagggaa |
352 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||| |
|
|
| T |
4598390 |
acgatcatccttatcattccctaaggttagggaa |
4598423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 619 - 726
Target Start/End: Complemental strand, 21307549 - 21307442
Alignment:
| Q |
619 |
ggaacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggtt |
718 |
Q |
| |
|
|||||| ||||||| ||||||||| |||| || || |||| || |||||||||||||||||||||| |||||||||||||| || || ||||| |||| |
|
|
| T |
21307549 |
ggaacataagctttcccttgaccatttttgttaacataattagtggtcgaagagttattgatgaaagagatataactcttagtgaaagagaactttggtt |
21307450 |
T |
|
| Q |
719 |
tatgatca |
726 |
Q |
| |
|
|||||||| |
|
|
| T |
21307449 |
tatgatca |
21307442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 664 - 758
Target Start/End: Original strand, 20863514 - 20863608
Alignment:
| Q |
664 |
gtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggtttatgatcatcgaaccatttccctcttttcttaggttttgg |
758 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||| ||| || ||| | | ||||||| ||||||||||| | |||||| |
|
|
| T |
20863514 |
gtcgaagagttattgatgaaaggaatataactcttagtaaaagagaactttggtctaagattaacagaccattttcctcttttcttggattttgg |
20863608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 619 - 749
Target Start/End: Complemental strand, 22616320 - 22616190
Alignment:
| Q |
619 |
ggaacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggtt |
718 |
Q |
| |
|
|||||||||| ||| ||||||||| | ||||| || |||| || |||||| |||||||||||||| |||||||||||||||||| || || || ||| |
|
|
| T |
22616320 |
ggaacaaaagttttcccttgaccattcttattaacataattagtggtcgaatagttattgatgaaaaaaatataactcttagtaaaagagaatttgggtc |
22616221 |
T |
|
| Q |
719 |
tatgatcatcgaaccatttccctcttttctt |
749 |
Q |
| |
|
|||||||| | ||||||| ||||||||||| |
|
|
| T |
22616220 |
tatgatcagcataccattttcctcttttctt |
22616190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 510
Target Start/End: Complemental strand, 21306675 - 21306594
Alignment:
| Q |
429 |
gtaccttctccatggagtccttgtcatgggggtcttccccttgtaattgttgttgtaagcaaacttctttgacgcaaaggca |
510 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |||| |||||||| ||||| | |||||||||||| | ||| |||||||| |
|
|
| T |
21306675 |
gtaccttctccattgagttcttgtcatgggattctttcccttgtagttgtttctataagcaaacttcctcgactcaaaggca |
21306594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 599
Target Start/End: Complemental strand, 22616398 - 22616346
Alignment:
| Q |
547 |
ttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaaccca |
599 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
22616398 |
ttcaccacattgttcttcccatactgaacattcttatgggtcgaatgaaccca |
22616346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 399 - 778
Target Start/End: Original strand, 35130 - 35505
Alignment:
| Q |
399 |
ggcttgcagcaatgccttttt-gaacctctggtaccttctccatggagtccttgtcatgggggtcttccccttgtaattgttgttgtaagcaaacttctt |
497 |
Q |
| |
|
||||||||||||||||||||| | || ||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35130 |
ggcttgcagcaatgccttttttggacatctactaccttctccattgagttcttgtcatggggttcttccccttgtaattgttgttgtaagcatacttctt |
35229 |
T |
|
| Q |
498 |
tgacgcaaaggcatcaccatttttgttatcaacaattctggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaacc |
597 |
Q |
| |
|
|||| |||||||| ||||||| || |||| | |||||| || |||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35230 |
tgactcaaaggcaataccattt-----ataaacagtactggtgctttctttcaccacattatttttcccatgttgcacattcttatgagtcgactgaacc |
35324 |
T |
|
| Q |
598 |
cactttgtatcacgtgcacaaggaacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactct |
697 |
Q |
| |
|
|| ||| | || ||||| ||||||||||||||||| ||| ||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
35325 |
catttttgaccaggtgcataaggaacaaaagctttttctttaccccttttatagacgtaattggtggtcgaagagttattgatgaaaggaatatagctct |
35424 |
T |
|
| Q |
698 |
tagtaaaggaaaacttaggtttatgatcatcgaaccatttccctcttttcttaggttttgggatagaactttcaaggcctt |
778 |
Q |
| |
|
|| ||||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
35425 |
taataaaggaaaacttaggtctatgatcaccagaccatttccttcttttcttaggttttgggatggaactttcaagacctt |
35505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 8e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 399 - 779
Target Start/End: Original strand, 22803977 - 22804356
Alignment:
| Q |
399 |
ggcttgcagcaatgccttttt-gaacctctggtaccttctccatggagtccttgtcatgggggtcttccccttgtaattgttgttgtaagcaaacttctt |
497 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||||| |||| || ||||| ||||||||||||||| ||||||| |
|
|
| T |
22803977 |
ggcttgcagcaacgccttttttggacctctggtaccttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcatacttctt |
22804076 |
T |
|
| Q |
498 |
tgacgcaaaggcatcaccatttttgttatcaacaatt---ctggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactga |
594 |
Q |
| |
|
|||| |||||||| |||||||||||| |||||||| || || ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22804077 |
tgactcaaaggcagtaccatttttgttgtcaacaatagtactattgcttcttttcaccacattgttcttcccatgttgcacattcttatgggtcgactga |
22804176 |
T |
|
| Q |
595 |
acccactttgtatcacgtgcacaaggaacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataac |
694 |
Q |
| |
|
||||| || | | ||||| ||||||| ||||||||||||| ||||| ||| |||||| ||||||| || ||||||||||| ||||| || ||| |
|
|
| T |
22804177 |
acccatttctggttaggtgcataaggaaccaaagcttttcctttaccacctttgttgacgtaattggtggtagaagagttattaatgaatgg-----aac |
22804271 |
T |
|
| Q |
695 |
tcttagtaaaggaaaacttaggtttatgatcatcgaaccatttccctcttttcttaggttttgggatagaactttcaaggccttt |
779 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
22804272 |
tctttgtaaaggaaaacttaggtctatgatcaccataccatttccctcttttcttagggtttgggatagaactttcaacgccttt |
22804356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 3 - 304
Target Start/End: Original strand, 17989602 - 17989904
Alignment:
| Q |
3 |
acaagaattacatctattttggcttcaaccacctcttttggtttct-acccaaaactttgaatatcaaggcaactattgccaaatttcaccatttgattt |
101 |
Q |
| |
|
|||||||||| ||||||||||| |||||| | |||| | |||||| ||| |||||||||||| | |||| ||||| |||||||||||||||||| ||| |
|
|
| T |
17989602 |
acaagaattatatctattttggtttcaacatcttcttctagtttcttaccaaaaactttgaatcttaaggaaactaatgccaaatttcaccatttaattc |
17989701 |
T |
|
| Q |
102 |
tcaatt-agggaccataaaaattccttatcatcaatacaatcaaatttatggtcaattgaccattatttcctgaagcttcaaacctaagtatttcaatag |
200 |
Q |
| |
|
| |||| ||| | | | |||||||| ||| | |||||||||||| ||| | || ||||| ||| ||| ||| |||| | |||||||||| |||| |
|
|
| T |
17989702 |
ttaattcaggaattacatcaattccttgtcaaagacacaatcaaatttgtggcctatcgaccaaaattcccttaagtctcaa-cttaagtatttccatag |
17989800 |
T |
|
| Q |
201 |
tatttttatttatggtctcttaaccatcttttgctaactgccagccactaaggccttcttaatctcatgctccggctaaacaaccgtgattttggtataa |
300 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||| || ||||| ||||||||| || ||| || ||||||| |||||||| ||||| || | ||| |
|
|
| T |
17989801 |
tatctttattaatggtctcttaaccatcttttgctaaatgttagccaataaggcctttttgatcccacactccggcaaaacaaccatgattctgttctaa |
17989900 |
T |
|
| Q |
301 |
gcat |
304 |
Q |
| |
|
|||| |
|
|
| T |
17989901 |
gcat |
17989904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 751
Target Start/End: Complemental strand, 20062561 - 20062466
Alignment:
| Q |
656 |
aattggtagtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggtttatgatcatcgaaccatttccctcttttcttag |
751 |
Q |
| |
|
||||||| || ||||| |||||||||||||||||||||||||||||||| || ||||| ||| |||||||| ||||||| ||||| ||||||| |
|
|
| T |
20062561 |
aattggtggttgaagaattattgatgaaaggaatataactcttagtaaaagagaactttggtctatgatcagtagaccattttcctctcttcttag |
20062466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 622 - 758
Target Start/End: Original strand, 21379756 - 21379892
Alignment:
| Q |
622 |
acaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggtttat |
721 |
Q |
| |
|
||||||| ||| ||||||||| | ||||| || || | || || |||||||||||||||||| ||||||||| || || || |||||||| ||| ||| |
|
|
| T |
21379756 |
acaaaagttttcccttgaccattcttattaacataactagtggttgaagagttattgatgaaatgaatataacgtttggtgaatgaaaactttggtctat |
21379855 |
T |
|
| Q |
722 |
gatcatcgaaccatttccctcttttcttaggttttgg |
758 |
Q |
| |
|
||||| | |||||||| ||||||||||| | |||||| |
|
|
| T |
21379856 |
gatcaacaaaccattttcctcttttctttgattttgg |
21379892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 8e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 11886194 - 11885836
Alignment:
| Q |
1 |
aaacaagaattacatctattttggcttcaaccacctcttttggtttctacccaaaactttgaatatcaa-ggcaactattgccaaatttcaccatttgat |
99 |
Q |
| |
|
||||| |||| |||||||| |||||||| ||||| ||||||| |||||||||||||||| |||||||| |||||||| |||||||||| || |||| || |
|
|
| T |
11886194 |
aaacaggaatcacatctatattggcttcgaccacttcttttgacttctacccaaaactttcaatatcaaaggcaactaatgccaaattttactatttaat |
11886095 |
T |
|
| Q |
100 |
tttcaattagggaccataaaaattccttatcatcaatacaatcaaatttatggtcaattgaccattatttcctgaagcttcaaacctaagtatttcaata |
199 |
Q |
| |
|
|| |||||||| |||||| |||||||||||||| || ||||||||||| ||| | |||||||| ||||||||| |||||||||||| ||| |
|
|
| T |
11886094 |
ttccaattaggaaccatacaaattccttatcatagatgcaatcaaatttttggccgattgacca----------aagcttcaa-cctaagtatttcgata |
11886006 |
T |
|
| Q |
200 |
gtatttttatttatggtctcttaaccatcttttgctaactgccagccactaaggccttcttaatctcatgctccggctaaacaaccgtgattttggtata |
299 |
Q |
| |
|
|||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | || |
|
|
| T |
11886005 |
gtatctctattaatggtctcttaaccatcttttgctaactgctcgccactaaggccttcttgatctcatgctccggctaaacaaccgtgattttgttcta |
11885906 |
T |
|
| Q |
300 |
agcattttgcttagatgtgatgatcatcctcatcattccctaaggttagggaacttagattttccacatt |
369 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||||| |
|
|
| T |
11885905 |
tgcatttttcttagatgtgatgatcatcctcatcattccctaaggctagggaattcagattctccacatt |
11885836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 3 - 389
Target Start/End: Complemental strand, 19886464 - 19886079
Alignment:
| Q |
3 |
acaagaattacatctattttggcttcaaccacctcttttggtttct-acccaaaactttgaatatcaaggcaactattgccaaatttcaccatttgattt |
101 |
Q |
| |
|
||||||| || ||||||||| | ||||||||| |||| |||||||| | ||||| ||||||| |||||||||||| || ||||||||||||||| |||| |
|
|
| T |
19886464 |
acaagaactatatctattttagtttcaaccacttcttctggtttcttaaccaaagttttgaatgtcaaggcaactaatgtcaaatttcaccatttaattt |
19886365 |
T |
|
| Q |
102 |
tcaattagggaccataaaaattccttatcatcaatacaatcaaatttatggtcaattgaccattatttcctgaagcttcaaacctaagtatttcaatagt |
201 |
Q |
| |
|
| || |||| | ||| |||||| ||||| ||||||||||||| ||| | |||||||| |||| | ||| ||||| |||||||||||| ||||| |
|
|
| T |
19886364 |
t-aagtaggaatgatactaattccccatcatagttacaatcaaatttgtggcctattgaccaacatttaattaagtttcaa-cctaagtatttcgatagt |
19886267 |
T |
|
| Q |
202 |
atttttatttatggtctcttaaccatcttttgctaactgccagccactaaggccttcttaatctcatgctccggctaaacaaccgtgattttggtataag |
301 |
Q |
| |
|
||||| | ||| ||||||||||| |||||||| | |||||||||| ||||||||| |||||| | ||||||||||||||||||||| || | |||| |
|
|
| T |
19886266 |
attttcgctaatgacttcttaaccatcatttgctaaataccagccactagggccttctttatctcaagatccggctaaacaaccgtgattatgttctaag |
19886167 |
T |
|
| Q |
302 |
cattttgcttagatgtgatgatcatcctcatcattccctaaggttagggaacttagattttccacattcggtcctatgtcaagagtct |
389 |
Q |
| |
|
|| |||| |||||||||||| | ||||||||||||||| ||||||| | |||| ||| |||| ||| || |||| ||||||| |
|
|
| T |
19886166 |
aatcttgcctagatgtgatgactgtattcatcattccctaagagtagggaattcagatcttcggcattaggttctgtgtcgagagtct |
19886079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 14943572 - 14943625
Alignment:
| Q |
546 |
tttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaaccca |
599 |
Q |
| |
|
||||||||| ||||| ||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
14943572 |
tttcaccactttgttcttcccatactgaacatttttatgggtcgactgaaccca |
14943625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 7e-76; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 424 - 779
Target Start/End: Complemental strand, 24987817 - 24987459
Alignment:
| Q |
424 |
ctctggtaccttctccatggagtccttgtcatgggggtcttccccttgtaattgttgttgtaagcaaacttctttgacgcaaaggcatcaccatttttgt |
523 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||| | || |||||||| |||||| | |||||||||||||| ||| |||||| | ||||||||||| |
|
|
| T |
24987817 |
ctctggtaccttctccattgagttcttatcatgggattatttcccttgtagttgttgctataagcaaacttcttcgactcaaaggtagtaccatttttgt |
24987718 |
T |
|
| Q |
524 |
tat---caacaattctggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaacccactttgtatcacgtgcacaagg |
620 |
Q |
| |
|
||| |||||| |||||| ||| ||||||| ||||||| || ||||||||||||||||||||||| || |||||||| ||| | ||||| |||| |
|
|
| T |
24987717 |
tattatcaacaacactggtggttcttttcaccgcattgttcttaccatgttgcacattcttatgggtagattgaacccatttttggttgggtgcataagg |
24987618 |
T |
|
| Q |
621 |
aacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggttta |
720 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
24987617 |
gactaaagcttttccttgaccacttttattgacataattggtggtcgaagagttattgatgaaaggaatataactctttgtaaaggaaaacttaggtcta |
24987518 |
T |
|
| Q |
721 |
tgatcatcgaaccatttccctcttttcttaggttttgggatagaactttcaaggccttt |
779 |
Q |
| |
|
|||||| |||| || || |||||||||||||||||||| |||| || |||||||| |
|
|
| T |
24987517 |
tgatcactagaccactttccccttttcttaggttttgggatggaacctttgaggccttt |
24987459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 422 - 768
Target Start/End: Complemental strand, 25566782 - 25566433
Alignment:
| Q |
422 |
acctctggtaccttctccatggagtccttgtcatgggggtcttccccttgtaattgttgttgtaagcaaacttctttgacgcaaaggcatcaccattttt |
521 |
Q |
| |
|
||||| ||||||| |||||| || | ||||||||| | |||| || ||| || ||||| | ||| |||||||| | || |||||| | |||||||||| |
|
|
| T |
25566782 |
acctccggtacctcctccattgatttcttgtcatgtgattctttcctttgcaactgttgctataaacaaacttcctcgattcaaagggaacaccattttt |
25566683 |
T |
|
| Q |
522 |
gttatca---acaattctggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaacccactttgtatcacgtgcacaa |
618 |
Q |
| |
|
||||| | |||| |||||||||| | |||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| | | ||||| || |
|
|
| T |
25566682 |
gttattatccacaacactggtgtttcttgtcaccatattgttcttcccatgttgcacattcttatgggtcgactgaacccatttttggttaggtgcataa |
25566583 |
T |
|
| Q |
619 |
ggaacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggtt |
718 |
Q |
| |
|
|| || |||||||||||||||||| ||| |||||| ||||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||||||| || |
|
|
| T |
25566582 |
gggactaaagcttttccttgaccaatttgattgacataattggtggtcgaagagttattaatgaaaggaatatagctctttgtaaatgaaaacttatgtc |
25566483 |
T |
|
| Q |
719 |
tatgatcatcgaaccatttccctcttttcttaggttttgggatagaactt |
768 |
Q |
| |
|
|||||||| | |||||||||| | ||||||||||||||||||| |||| |
|
|
| T |
25566482 |
tatgatcaccagaccatttccccttcttcttaggttttgggataggactt |
25566433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 212 - 349
Target Start/End: Original strand, 25578941 - 25579078
Alignment:
| Q |
212 |
atggtctcttaaccatcttttgctaactgccagccactaaggccttcttaatctcatgctccggctaaacaaccgtgattttggtataagcattttgctt |
311 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| |||||| |||||| |||||||||| ||| ||||||||||||||| ||||| | ||||||||||| | |
|
|
| T |
25578941 |
atggtttcttaaccatcttttgttaactgccaaccactatggcctttttaatctcatactctggctaaacaaccgtggttttgctccaagcattttgcat |
25579040 |
T |
|
| Q |
312 |
agatgtgatgatcatcctcatcattccctaaggttagg |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25579041 |
agatgtgatgatcatcctcatcattccctaaggctagg |
25579078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 212 - 365
Target Start/End: Complemental strand, 25567875 - 25567721
Alignment:
| Q |
212 |
atggtctcttaaccatcttttgctaactgccagccactaaggccttcttaatctcatgctccggctaaa-caaccgtgattttggtataagcattttgct |
310 |
Q |
| |
|
||||| ||||||||||||||||| || | | ||||| |||||||| || || | || ||||||||||| ||||||||||| | | |||| || ||||| |
|
|
| T |
25567875 |
atggtttcttaaccatcttttgccaagtactagccattaaggcctgtttgattttatactccggctaaaacaaccgtgattcagctctaagaatcttgct |
25567776 |
T |
|
| Q |
311 |
tagatgtgatgatcatcctcatcattccctaaggttagggaacttagattttcca |
365 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||| | |||||||||| |
|
|
| T |
25567775 |
tagatgtggtgatcatcttcagcattccctaaggttagggaattcagattttcca |
25567721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 25578841 - 25578937
Alignment:
| Q |
1 |
aaacaagaattacatctattttggcttcaaccacctcttttggtttctacccaaaactttgaatatc-aaggcaactattgccaaatttcaccatttg |
97 |
Q |
| |
|
||||| |||| | ||||||||| || || || || | |||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||| |
|
|
| T |
25578841 |
aaacaggaatcaaatctattttagcctcgactacttattttggtttctacccaaaactttgaatatcaaaggcaactgatgcc-aattttaccatttg |
25578937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 1e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 422 - 779
Target Start/End: Original strand, 24899832 - 24900192
Alignment:
| Q |
422 |
acctctggtaccttctccatggagtccttgtcatgggggtcttccccttgtaattgttgttgtaagcaaacttctttgacgcaaaggcatcaccattttt |
521 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||| | |||||| |||| || || |||||| | || |||||| |
|
|
| T |
24899832 |
acctctggtaccttctccattgagtccttgtcatgggattctttcccttgtagttgttgctataagcatactttttcaactcaaaggtagtacaattttt |
24899931 |
T |
|
| Q |
522 |
gtt---atcaacaattctggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaacccactttgtatcacgtgcacaa |
618 |
Q |
| |
|
||| |||||||| ||| || ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || | ||||| || |
|
|
| T |
24899932 |
gttgttatcaacaacactgatgcttcttttcaccacattgttcttcccatgttgcacattcttatgggtagactgaacccatttctggttgggtgcataa |
24900031 |
T |
|
| Q |
619 |
ggaacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggtt |
718 |
Q |
| |
|
||||| |||| ||||| ||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
24900032 |
ggaaccaaagtttttcgttgaccactcttattgacataattgatggtcgaagagttattgatgaaaggaatataactctttgtaaagaaaaacttaggtc |
24900131 |
T |
|
| Q |
719 |
tatgatcatcgaaccatttccctcttttcttaggttttgggatagaactttcaaggccttt |
779 |
Q |
| |
|
|||||||| | ||||||| || |||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
24900132 |
tatgatcaccataccatttgccccttttcttaggttttgggatagaatcttcgaggccttt |
24900192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 536 - 599
Target Start/End: Original strand, 22261452 - 22261515
Alignment:
| Q |
536 |
tggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaaccca |
599 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22261452 |
tggtgtttcttttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaaccca |
22261515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 919453 - 919383
Alignment:
| Q |
186 |
taagtatttcaatagtatttttatttatggtctcttaaccatcttttgctaactgccagccactaaggcct |
256 |
Q |
| |
|
||||| |||||||||||| ||| || ||||| ||||||||||||||||| || | | |||||||||||||| |
|
|
| T |
919453 |
taagtgtttcaatagtatctttgttaatggtatcttaaccatcttttgccaaatactagccactaaggcct |
919383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 2e-70; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 20245857 - 20246200
Alignment:
| Q |
1 |
aaacaagaattacatctattttggcttcaaccacctcttttggtttctacccaaaactttgaatatcaa-ggcaactattgccaaatttcaccatttgat |
99 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||||| |||||||| ||||| ||| |||||| ||| |
|
|
| T |
20245857 |
aaacaataattacatctattgtggcttcaaccacttcttttggtttctactcaatactttgaatatcaaaggcaactaatgccactttt-accattcgat |
20245955 |
T |
|
| Q |
100 |
tttcaattagggaccataaaaattccttatcatca---atacaatcaaatttatggtcaattgaccattatttcctgaagcttcaaacctaagtatttca |
196 |
Q |
| |
|
| ||||||||| | |||| |||| ||| ||||||| |||| || |||||||||| ||||||||||| ||||||| || || |||| |||| | || |
|
|
| T |
20245956 |
tctcaattaggaatcatacaaatacctaatcatcatagatacgataaaatttatggccaattgaccatcatttccttcagttttaaac-taagaactttg |
20246054 |
T |
|
| Q |
197 |
atagtatttttatttatggtctcttaaccatcttttgctaactgccagccactaaggccttcttaatctcatgctccggctaaacaaccgtgattttggt |
296 |
Q |
| |
|
||||||| ||| | |||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||| || |||||||||||||||||||| | |
|
|
| T |
20246055 |
atagtatctttgctaatggtctcataaccatcttttgctaaatgtcagccactatggccttcttaatctcatataccagctaaacaaccgtgattttgct |
20246154 |
T |
|
| Q |
297 |
ataagcattttgcttagatgtgatgatcatcctcatcattccctaa |
342 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20246155 |
ctaagcactttgcttagatgttatgatcatcctcatcattccctaa |
20246200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 22139841 - 22140184
Alignment:
| Q |
1 |
aaacaagaattacatctattttggcttcaaccacctcttttggtttctacccaaaactttgaatatcaa-ggcaactattgccaaatttcaccatttgat |
99 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||||| |||||||| ||||| ||| |||||| ||| |
|
|
| T |
22139841 |
aaacaataattacatctattgtggcttcaaccacttcttttggtttctactcaatactttgaatatcaaaggcaactaatgccactttt-accattcgat |
22139939 |
T |
|
| Q |
100 |
tttcaattagggaccataaaaattccttatcatca---atacaatcaaatttatggtcaattgaccattatttcctgaagcttcaaacctaagtatttca |
196 |
Q |
| |
|
| ||||||||| | |||| |||| ||| ||||||| |||| || |||||||||| ||||||||||| ||||||| || || |||| |||| | || |
|
|
| T |
22139940 |
tctcaattaggaatcatacaaatacctaatcatcatagatacgataaaatttatggccaattgaccatcatttccttcagttttaaac-taagaactttg |
22140038 |
T |
|
| Q |
197 |
atagtatttttatttatggtctcttaaccatcttttgctaactgccagccactaaggccttcttaatctcatgctccggctaaacaaccgtgattttggt |
296 |
Q |
| |
|
||||||| ||| | |||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||| || |||||||||||||||||||| | |
|
|
| T |
22140039 |
atagtatctttgctaatggtctcataaccatcttttgctaaatgtcagccactatggccttcttaatctcatataccagctaaacaaccgtgattttgct |
22140138 |
T |
|
| Q |
297 |
ataagcattttgcttagatgtgatgatcatcctcatcattccctaa |
342 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22140139 |
ctaagcactttgcttagatgttatgatcatcctcatcattccctaa |
22140184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 237 - 368
Target Start/End: Original strand, 20195748 - 20195880
Alignment:
| Q |
237 |
actgccagccact-aaggccttcttaatctcatgctccggctaaacaaccgtgattttggtataagcattttgcttagatgtgatgatcatcctcatcat |
335 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||||||||||||||||||| ||||||| | |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
20195748 |
actgccggccacttaaggccttcttaatctaatgctccggctaaacaaccatgatttttctctaagcatttttctttgatgtgatgatcatcctcatcat |
20195847 |
T |
|
| Q |
336 |
tccctaaggttagggaacttagattttccacat |
368 |
Q |
| |
|
|| |||| | ||||||||||||||||||||||| |
|
|
| T |
20195848 |
tctctaaagctagggaacttagattttccacat |
20195880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 237 - 368
Target Start/End: Original strand, 22089771 - 22089903
Alignment:
| Q |
237 |
actgccagccact-aaggccttcttaatctcatgctccggctaaacaaccgtgattttggtataagcattttgcttagatgtgatgatcatcctcatcat |
335 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||||||||||||||||||| ||||||| | |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
22089771 |
actgccggccacttaaggccttcttaatctaatgctccggctaaacaaccatgatttttctctaagcatttttctttgatgtgatgatcatcctcatcat |
22089870 |
T |
|
| Q |
336 |
tccctaaggttagggaacttagattttccacat |
368 |
Q |
| |
|
|| |||| | ||||||||||||||||||||||| |
|
|
| T |
22089871 |
tctctaaagctagggaacttagattttccacat |
22089903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 218 - 369
Target Start/End: Original strand, 25948048 - 25948199
Alignment:
| Q |
218 |
tcttaaccatcttttgctaactgccagccactaaggccttcttaatctcatgctccggctaaacaaccgtgattttggtataagcattttgcttagatgt |
317 |
Q |
| |
|
|||||||||||||||||||| | |||||| ||||||||||||| |||||| | | ||||||||||||||| ||| || | ||||||| |||||||||||| |
|
|
| T |
25948048 |
tcttaaccatcttttgctaaataccagcctctaaggccttctttatctcaagatacggctaaacaaccgttattctgttctaagcatcttgcttagatgt |
25948147 |
T |
|
| Q |
318 |
gatgatcatcctcatcattccctaaggttagggaacttagattttccacatt |
369 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||||| | |||| ||||||||| |
|
|
| T |
25948148 |
gatgaccatcttcatcattccctaagactagggaattcagatcttccacatt |
25948199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 25947900 - 25948000
Alignment:
| Q |
3 |
acaagaattacatctattttggcttcaaccacctcttttggtttct-acccaaaactttgaatatcaaggcaactattgccaaatttcaccatttgattt |
101 |
Q |
| |
|
|||||||||| ||||||||| | ||||||||| ||||||||||||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25947900 |
acaagaattatatctattttagtttcaaccacttcttttggtttcttacctaaaattttgaatatcaaggcaactaatgccaaatttcaccatttgattt |
25947999 |
T |
|
| Q |
102 |
t |
102 |
Q |
| |
|
| |
|
|
| T |
25948000 |
t |
25948000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 135; Significance: 6e-70; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 428 - 779
Target Start/End: Complemental strand, 80037 - 79684
Alignment:
| Q |
428 |
ggtaccttctccatggagtccttgtcatgggggtcttccccttgtaattgttgttgtaagcaaacttctttgacgcaaaggcatcac-catttttgtt-- |
524 |
Q |
| |
|
|||||||||||||| |||| ||||||||| | |||| ||||||||||||||| | |||||||||||||||||| |||| | | || |||||||||| |
|
|
| T |
80037 |
ggtaccttctccattgagttcttgtcatgtgattctttcccttgtaattgttgctataagcaaacttctttgactcaaatgaagtacacatttttgtttt |
79938 |
T |
|
| Q |
525 |
-atcaacaattctggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaacccactttgtatcacgtgcacaaggaac |
623 |
Q |
| |
|
||| |||| ||||||||| ||| ||||||||||| ||||||| ||| ||||| || |||||| | |||||||| ||| ||| ||||| ||||||| |
|
|
| T |
79937 |
tatccacaacattggtgtttccttttaccacattgttcttcccattttgtacattattttgggtcaattgaacccattttttattcggtgcataaggaac |
79838 |
T |
|
| Q |
624 |
aaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggtttatga |
723 |
Q |
| |
|
|| |||||||||||| || |||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |
|
|
| T |
79837 |
aa--gcttttccttgaacaattttattgacataatttgtggtcgaagagttattgatgaaaggaatataactctttgtaaaggaaaactaaggtctatga |
79740 |
T |
|
| Q |
724 |
tcatcgaaccatttccctcttttcttaggttttgggatagaactttcaaggccttt |
779 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||| |||||| ||| |||||||| |
|
|
| T |
79739 |
tcaccagaccatttccctcttttcttaggttttggggtagaaccttcgaggccttt |
79684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 68 - 352
Target Start/End: Complemental strand, 80399 - 80114
Alignment:
| Q |
68 |
aaggcaactattgccaaatttcaccatttgattttcaa-ttagggaccataaaaattccttatcatcaatacaatcaaatttatggtcaattgaccatta |
166 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| | ||| | || | |||||||||||| |||||||||||| ||||| |||||| ||| | |
|
|
| T |
80399 |
aaggcaactaatgccaaatttcaccatttgattttcaactaaggaatcacatcaattccttatcaaagatacaatcaaatatatggccaattggccaaaa |
80300 |
T |
|
| Q |
167 |
tttcctgaagcttcaaacctaagtatttcaatagtatttttatttatggtctcttaaccatcttttgctaactgccagccactaaggccttcttaatctc |
266 |
Q |
| |
|
||| || |||| | || | ||||| |||| |||||| || ||| |||||| | ||||||||| | || | || |||| ||||||||| ||||| |
|
|
| T |
80299 |
ttttcttaagcct-aagcttaagtgtttcgatagtaccttcattaatggtcccctaaccatctcctaatacacgtcatttactatggccttcttgatctc |
80201 |
T |
|
| Q |
267 |
a-tgctccggctaaacaaccgtgattttggtataagcattttgcttagatgtgatgatcatcctcatcattccctaaggttagggaa |
352 |
Q |
| |
|
| || |||||||||| ||||||| || | ||||||| ||||||||||||||||| ||||||| |||||||||| || ||||||| |
|
|
| T |
80200 |
acatttcaggctaaacaatcgtgattatgttctaagcatcttgcttagatgtgatgaccatcctcgtcattccctacggctagggaa |
80114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 6e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 409 - 779
Target Start/End: Original strand, 16922410 - 16922784
Alignment:
| Q |
409 |
aatgccttt-ttgaacctctggtaccttctccatggagtccttgtcatgggggtcttccccttgtaattgttgttgtaagcaaacttctttgacgcaaag |
507 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||||| |||| ||||||||||| | || ||||||| ||||||| | || ||||||| | ||| ||||| |
|
|
| T |
16922410 |
aatgcctttcttggacctctggtacctcctccactgagttcttgtcatgggattatttaccttgtagttgttgtaatgagaaaacttcctcgactcaaag |
16922509 |
T |
|
| Q |
508 |
gcatcaccatttttgtt---atcaacaattctggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaacccactttg |
604 |
Q |
| |
|
||| |||||||||||| ||| |||| |||||||||| |||||||| |||||| |||||||||||||||||||| |||||||| |||||||| ||| |
|
|
| T |
16922510 |
gcagtaccatttttgttgttatccacaacactggtgtttcttttcaccatattgttcttcccatgttgcacattcttgtgggtcgattgaacccattttt |
16922609 |
T |
|
| Q |
605 |
tatcacgtgcacaaggaacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttagtaaa |
704 |
Q |
| |
|
| ||||| |||| || |||| |||||| |||||||| | |||||| |||||| || |||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
16922610 |
ggtttggtgcataagggaccaaagtttttccgtgaccactctgattgacataattggaggttgaagagttattgatgaaatgaatataactctttgtaaa |
16922709 |
T |
|
| Q |
705 |
ggaaaacttaggtttatgatcatcgaaccatttccctcttttcttaggttttgggatagaactttcaaggccttt |
779 |
Q |
| |
|
||||||| ||||| |||||||| | |||||||||| ||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
16922710 |
ggaaaacgtaggtatatgatcagcagaccatttcccccttttcttaggttttgggatagaaccttcgaggccttt |
16922784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 520 - 779
Target Start/End: Original strand, 2284591 - 2284850
Alignment:
| Q |
520 |
ttgttatcaacaattctggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaacccactttgtatcacgtgcacaag |
619 |
Q |
| |
|
|||||||| |||| |||||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||| | ||||| ||| |
|
|
| T |
2284591 |
ttgttatccacaacactggtgtttcttttcaccacattgttcttcccatgttgcacatacttatgggttgactgaacccaattttggttgggtgcataag |
2284690 |
T |
|
| Q |
620 |
gaacaaaagcttttccttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggttt |
719 |
Q |
| |
|
| || ||| |||||||||||||||||| ||| || | ||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
2284691 |
ggactaaaacttttccttgaccactttgattaacatagttggtggtggaagagttattgatcaaaggaatataactctttgtaaaggaaaacttaggtct |
2284790 |
T |
|
| Q |
720 |
atgatcatcgaaccatttccctcttttcttaggttttgggatagaactttcaaggccttt |
779 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
2284791 |
atgatcaccataccatttccctcttttcttaggttttgggatagaaccttcgagaccttt |
2284850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 535 - 776
Target Start/End: Original strand, 17136265 - 17136506
Alignment:
| Q |
535 |
ctggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcgactgaacccactttgtatcacgtgcacaaggaacaaaagcttttc |
634 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |||||| ||| | ||||| |||| || ||| ||||| |
|
|
| T |
17136265 |
ctggtgtttcttttcaccacattgttttccccatgttgcacattcttgtgggtcgacttaacccatttttggtttggtgcataagggaccaaaatttttc |
17136364 |
T |
|
| Q |
635 |
cttgaccacttttattgacgaaattggtagtcgaagagttattgatgaaaggaatataactcttagtaaaggaaaacttaggtttatgatcatcgaacca |
734 |
Q |
| |
|
|||||||||| | |||||| ||||||| |||||||||||| ||||||| |||||||||||| || || |||||||||||| |||| ||| | |||| |
|
|
| T |
17136365 |
cttgaccactctgattgacataattggtgatcgaagagttatcgatgaaataaatataactcttggtgaaagaaaacttaggtctatggtcagcagacca |
17136464 |
T |
|
| Q |
735 |
tttccctcttttcttaggttttgggatagaactttcaaggcc |
776 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| ||||| |
|
|
| T |
17136465 |
tttccccattttcttaggttttgggatagaaccttcgaggcc |
17136506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 66 - 352
Target Start/End: Original strand, 2283272 - 2283559
Alignment:
| Q |
66 |
tcaaggcaactattgccaaatttcaccatttgattttcaattaggga-ccataaaaattccttatcatcaatacaatcaaattt-atggtcaattgacca |
163 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||||||||| ||| ||||| |||| ||||| | |||||| | ||||| |||| |||||||||| |
|
|
| T |
2283272 |
tcaaggcaacaaatgccgaatttcaccatttgattttcaattaaggaaccatatcaatttcttatgaaagatacaaaccaattttatggccaattgacca |
2283371 |
T |
|
| Q |
164 |
ttatttcctgaagcttcaaacctaagtatttcaatagtatttttatttatggtctcttaaccatcttttgctaactgccagccactaaggccttcttaat |
263 |
Q |
| |
|
||||||| |||| | | | ||||| |||| ||||||| |||||| |||||||| ||||||||| || ||| ||||||||||||||||| || || |
|
|
| T |
2283372 |
aaatttccttaagcatgag-cttaagtgtttcgatagtatctttattaatggtctcctaaccatctcttactacacaccagccactaaggcctttttgat |
2283470 |
T |
|
| Q |
264 |
ctcatgctccggctaaacaaccgtgattttggtataagcattttgcttagatgtgatgatcatcctcatcattccctaaggttagggaa |
352 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||||| ||| |||||||||||||||||| ||| | ||||| ||||||||||||||| |
|
|
| T |
2283471 |
ctcacactccggctaaacaaccgtgatccagttataatcatcttgcttagatgtgatgattatctttgtcatttcctaaggttagggaa |
2283559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 219 - 343
Target Start/End: Original strand, 17135963 - 17136087
Alignment:
| Q |
219 |
cttaaccatcttttgctaactgccagccactaaggccttcttaatctcatgctccggctaaacaaccgtgattttggtataagcattttgcttagatgtg |
318 |
Q |
| |
|
|||||||||||||| |||| | |||||||||| |||| |||| |||||| | |||||||||||| ||||||| | ||||||| ||||||||||||| |
|
|
| T |
17135963 |
cttaaccatcttttactaagtaccagccactatggccctcttgatctcacatttcggctaaacaactgtgatttgattctaagcatcttgcttagatgtg |
17136062 |
T |
|
| Q |
319 |
atgatcatcctcatcattccctaag |
343 |
Q |
| |
|
||||||| | ||||||||||||||| |
|
|
| T |
17136063 |
atgatcaccttcatcattccctaag |
17136087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1720 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold1720
Description:
Target: scaffold1720; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 686 - 779
Target Start/End: Complemental strand, 770 - 677
Alignment:
| Q |
686 |
gaatataactcttagtaaaggaaaacttaggtttatgatcatcgaaccatttccctcttttcttaggttttgggatagaactttcaaggccttt |
779 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||| | ||| ||||||||||| |
|
|
| T |
770 |
gaatataactctttgtaaaggaaaacctaggtttatgatcactagaccattttcctcttttcttaggttttgagatggtactctcaaggccttt |
677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 111824 - 111742
Alignment:
| Q |
270 |
ctccggctaaacaaccgtgattttggtataagcattttgcttagatgtgatgatcatcctcatcattccctaaggttagggaa |
352 |
Q |
| |
|
||||||||| ||||||||||||| | ||| ||| ||||||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
111824 |
ctccggctacacaaccgtgatttgattctaatcatcctgcttagatgtgatgatcatcttcatcattccccaaagttagggaa |
111742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 233
Target Start/End: Complemental strand, 114754 - 114590
Alignment:
| Q |
68 |
aaggcaactattgccaaatttcaccatttgattttcaat-tagggaccataaaaattccttatcatcaatacaatcaaatttatggtcaattgaccatta |
166 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| | | ||| | |||| |||||||||| |||| |||||||| ||||||||||||||| | |
|
|
| T |
114754 |
aaggcaactattgccaaatttcaccatttaattttaactaaaggaatcataccaattccttattggagatactatcaaattcatggtcaattgacca-aa |
114656 |
T |
|
| Q |
167 |
tttcctgaagcttcaaacctaagtatttcaatagtatttttatttatggtctcttaaccatcttttg |
233 |
Q |
| |
|
||||| |||| | |||| ||||| |||||||| ||| || || ||||| |||||||||||||||| |
|
|
| T |
114655 |
attccttaagcat-aaacttaagtgtttcaataatatcttcatcaatggtttcttaaccatcttttg |
114590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 63520 - 63602
Alignment:
| Q |
270 |
ctccggctaaacaaccgtgattttggtataagcattttgcttagatgtgatgatcatcctcatcattccctaaggttagggaa |
352 |
Q |
| |
|
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| T |
63520 |
ctccgactacacaaccatgatttagttctaagcatcttgcttagacttgatgatcatcttcatcatttcccaagcttagggaa |
63602 |
T |
|
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