View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12673_low_15 (Length: 239)
Name: NF12673_low_15
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12673_low_15 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 18343845 - 18344057
Alignment:
| Q |
16 |
gttttgatataaggttctaacgaatccatatttctcnnnnnnnnn---attatcatattggcaaaaatttctaaattcaaaaaac-ccacattttcgcgg |
111 |
Q |
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| T |
18343845 |
gttttgatataaggttctaacgaatccatatttgtcttttttttttttattatcatattggcaaaaatttctaaattcaaaaaaatccacattttcgcgg |
18343944 |
T |
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| Q |
112 |
gcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18343945 |
gcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccat |
18344044 |
T |
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| Q |
212 |
ctaacgaatcagt |
224 |
Q |
| |
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|||| |||||||| |
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| T |
18344045 |
ctaatgaatcagt |
18344057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 36639037 - 36638877
Alignment:
| Q |
61 |
attatcatattggcaaaaatttctaaatt-caaaaaacccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggtta |
159 |
Q |
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| T |
36639037 |
attatcatattggcaaaaaaaattaaattaaaaaaaatccacattttcgcgggcgaatattcactctttcattataaatttaagatgtaatgttgggtta |
36638938 |
T |
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| Q |
160 |
gtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaacgaat |
220 |
Q |
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| T |
36638937 |
gtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaatgaat |
36638877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 36639088 - 36639056
Alignment:
| Q |
16 |
gttttgatataaggttctaacgaatccatattt |
48 |
Q |
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| T |
36639088 |
gttttgatataatgttctaacgaatccatattt |
36639056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 67 - 224
Target Start/End: Complemental strand, 163439 - 163279
Alignment:
| Q |
67 |
atattggcaaaaatttctaaattcaaaaaac--ccacattttcgcgggcgaatattt-actctttcattataaatttaagatgtaatgttgggttagtcc |
163 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
163439 |
atattggcaaaaatttctaaattaaaaaaaaatccacattttcgcgggcgaatattttactctttcattataaatttaagatgtgatgttggattagtcc |
163340 |
T |
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| Q |
164 |
acaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaacgaatcagt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
163339 |
acaactcctcaaaaaataatgaattcttagttccgtccaccatcccatctaatgaatcagt |
163279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 163498 - 163466
Alignment:
| Q |
16 |
gttttgatataaggttctaacgaatccatattt |
48 |
Q |
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| T |
163498 |
gttttgatataaggttctaacgaatccatattt |
163466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 9857838 - 9857678
Alignment:
| Q |
64 |
atcatattggcaaaaatttctaaattcaaaaaac-ccacattttcgcgggcgaatattt-actctttcattataaatttaagatgtaatgttgggttagt |
161 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||| | | |||||||| ||||||||||||||||||||||||||||||| | |||| |
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| T |
9857838 |
atcatattggcaaaaatttataaattcaaaaaaatccacattttcacatgtgaatattttactctttcattataaatttaagatgtaatgtcagattagc |
9857739 |
T |
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| Q |
162 |
ccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaacgaatca |
222 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||| |
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| T |
9857738 |
ccacaactcctcaaaaaataatgaattcttagttttgtccaccatccaatctaatgaatca |
9857678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 31878264 - 31878210
Alignment:
| Q |
91 |
aaaaaacccacattttcgcgggcgaatatttactctttcattataaatttaagat |
145 |
Q |
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|||||| ||||||||| ||| |||||| ||||||||| |||||||||||||||| |
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| T |
31878264 |
aaaaaatccacatttttgcgaccgaataattactctttaattataaatttaagat |
31878210 |
T |
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