View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12673_low_17 (Length: 237)
Name: NF12673_low_17
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12673_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6495575 - 6495797
Alignment:
| Q |
1 |
atatgagttctattgaaagaagagtcagatcattggccacttttcattcgttacaattaagatgattggtggaataaaaaggtgtatgaggaaacaaagt |
100 |
Q |
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| T |
6495575 |
atatgggttctattcaaagatgagtcagatcattgaccgcttttcattggttacaattaagaagattggtggaataagaaggtgtatgaggaaacaaagt |
6495674 |
T |
|
| Q |
101 |
taaaaattcaaaagttgacgaaagaattgaatgtcttagatttgaggtgtgaatactaggctatcttgactagcaagattgagaaatgtaggaggttttt |
200 |
Q |
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| T |
6495675 |
taaaaattcaaaagttgatgaaggaattgaatgtcttagatttgaggtgtgaatactaggctatcttgactagcaagattgagaaatgtaggaggttttt |
6495774 |
T |
|
| Q |
201 |
tggaaagttatggatgttcttaa |
223 |
Q |
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||||||| ||||||||||||||| |
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| T |
6495775 |
tggaaaggtatggatgttcttaa |
6495797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 31730335 - 31730549
Alignment:
| Q |
8 |
ttctattgaaagaagagtcagatcattggccacttttcattcgttacaattaagatgattggtggaataaaaaggtgtatgaggaaacaaagttaaaaat |
107 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31730335 |
ttctattgaaagatgagtcagatcattgaccacttttcattcgttacaattaagaagattggtggaataagaaggtgtatgaggaaacaaagttaaaaat |
31730434 |
T |
|
| Q |
108 |
tcaaaagttgacgaaagaattgaatgtcttagatttgaggtgtgaatactaggctatcttgactagcaagattgagaaatgtaggagg-ttttttggaaa |
206 |
Q |
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|||||| |||| ||| |||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31730435 |
tcaaaaattgatgaaggaatcg--tgtcttagatttgaggtgtgaatactaagctatcttgactagcaagattgagaaatgtaggaggcttttttggaaa |
31730532 |
T |
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| Q |
207 |
gttatggatgttcttaa |
223 |
Q |
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||||||||||||||||| |
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| T |
31730533 |
gttatggatgttcttaa |
31730549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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