View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12673_low_2 (Length: 583)
Name: NF12673_low_2
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12673_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Complemental strand, 1167420 - 1166952
Alignment:
| Q |
19 |
actttggtacttgttggtcaatttgaaggttgattttgaaagtagtttgaattaagtattaatctaatgtacttttactcttcttatcttccaagtactt |
118 |
Q |
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| T |
1167420 |
actttggtacttgttggtcaatttgaaggttgattt-gaaagtagtttaaattaagtattaatctaatgtaattttactcttcttatcttccaagtactt |
1167322 |
T |
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| Q |
119 |
tggacggttcctcttctaatgtatggtgttactgcactggaaacatgtgtcctccttagcccccactgcctt-gaggcttcaaagcatgggtagcaggtt |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |
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| T |
1167321 |
tggacggttcctcttctaatgtttggtgttactgcactggaaacatgtgtcctccttagcccccactgccttagagacttcgaagcatgggtagcaggtt |
1167222 |
T |
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| Q |
218 |
tgggcttggcaactttcgtgcccttcctgttactcttatgtttagatttcttgtactacttattgaactttccactattgaccatcatgatgatcttccc |
317 |
Q |
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| T |
1167221 |
tgggcttggcaactttcgtgcccttcctgttactcttatgtttagatttcttgtactacttattgaactttccacttttgaccatcatgatgatcttccc |
1167122 |
T |
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| Q |
318 |
ctttccttctttgatattctgtttagtag---------tgctcaaaaactctatctctcaccttcatcatcattctgagnnnnnnnctttgcatctttat |
408 |
Q |
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| T |
1167121 |
ctttccttttttgatattctgtttagcagttctcaacatgctcaaaaactctatctctcaccttcatcatcattctgataaaaaaactttgcatctttat |
1167022 |
T |
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| Q |
409 |
ttgtttattttagtaaattaaaaattagtttaaaacctaacaaatgactttattttgctagtagtcatat |
478 |
Q |
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| T |
1167021 |
ttgtttattttagttaattaaaaattagtttaaaacctaacaaatgactttattttgctagtagtcatat |
1166952 |
T |
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Target: chr3 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 481 - 573
Target Start/End: Original strand, 23918230 - 23918322
Alignment:
| Q |
481 |
agtgggtgtttggttacccggtagaaaagtgcaaaagcactttcattttctcaaaagcaattttgtgatgtttggttatctttcacccctatg |
573 |
Q |
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| T |
23918230 |
agtgggtgtttggttacccggtagaaaagtgcaaaagcactttcatcttctcaaaagtaattttgtgatgtttggttatctttcacccttatg |
23918322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 478 - 573
Target Start/End: Complemental strand, 10854127 - 10854032
Alignment:
| Q |
478 |
tttagtgggtgtttggttacccggtagaaaagtgcaaaagcactttcattttctcaaaagcaattttgtgatgtttggttatctttcacccctatg |
573 |
Q |
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| T |
10854127 |
tttagtgggtgtttggttacccgatgaaaaggtgcaaaagcacgttcattttctcaaaagcaattttataatgtttggttatctttcacccttatg |
10854032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 487 - 560
Target Start/End: Original strand, 37267081 - 37267154
Alignment:
| Q |
487 |
tgtttggttacccggtagaaaagtgcaaaagcactttcattttctcaaaagcaattttgtgatgtttggttatc |
560 |
Q |
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|||||||||||||||| ||| |||||||||||| ||||| |||||||||| |||||||||||||||||||||| |
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| T |
37267081 |
tgtttggttacccggtgaaaaggtgcaaaagcacgttcatcttctcaaaagtaattttgtgatgtttggttatc |
37267154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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