View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12673_low_22 (Length: 220)
Name: NF12673_low_22
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12673_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 56378319 - 56378504
Alignment:
| Q |
18 |
tgaagcactcaactgctctgcctgccattgtcacagaaacttccacagaaaagaaatccaaggtgagactgaggatcaggagaactaccaccatcactca |
117 |
Q |
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| T |
56378319 |
tgaagcactcaactgctctgcctgccattgtcacagaaacttccacagaaaagaagtccaaggtgagactgaggatcaggagaactaccaccatcactca |
56378418 |
T |
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| Q |
118 |
gccttcaatttcaacttcaacagacagcagcaccaccacagcatgaggaaattcatgttacctcttcctgatcaggctcttggtct |
203 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56378419 |
gccttcaacttcaacttcaacagacagcagcaccaccacagcatgaggaaattcatgttacctcttcctgatcaggctcttggtct |
56378504 |
T |
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