View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12673_low_23 (Length: 214)

Name: NF12673_low_23
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12673_low_23
NF12673_low_23
[»] chr7 (4 HSPs)
chr7 (62-192)||(37247367-37247497)
chr7 (18-51)||(580598-580631)
chr7 (18-54)||(19921226-19921262)
chr7 (18-51)||(10012924-10012957)
[»] chr1 (3 HSPs)
chr1 (18-54)||(40679210-40679246)
chr1 (18-54)||(34428513-34428549)
chr1 (18-51)||(19280580-19280613)
[»] chr5 (3 HSPs)
chr5 (18-51)||(23616835-23616868)
chr5 (18-51)||(23848234-23848267)
chr5 (18-51)||(4151875-4151908)
[»] scaffold1544 (1 HSPs)
scaffold1544 (18-52)||(1296-1330)
[»] chr4 (2 HSPs)
chr4 (18-52)||(48710790-48710824)
chr4 (18-51)||(11673479-11673512)
[»] chr8 (2 HSPs)
chr8 (22-51)||(11306477-11306506)
chr8 (18-51)||(14774846-14774879)
[»] chr3 (1 HSPs)
chr3 (18-51)||(22721126-22721159)


Alignment Details
Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 37247497 - 37247367
Alignment:
Q  62 taaattgtatggtcaagtaatttaatctagaagtatatgaagtgtaagtttaacgataagagttcgatcatttaattgtaagagacacaatttaaatttt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||  ||||||||||||    
T  37247497 taaattgtatggtcaagtaatttaatctagaagtatatgaagtgtaagtttagcaataagagtttgatcatttaattgtaagagacgaaatttaaatttt 37247398  T
Q  162 atctgaaacatttgtaaaatgactcttagag 192  Q
    |||||||||||||||||||||||||||||||    
T  37247397 atctgaaacatttgtaaaatgactcttagag 37247367  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 580631 - 580598
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggt 51  Q
    ||||||||||||||||||||||||||||||||||    
T  580631 aaagggggaccaaaccaaaaccttttcaaaaggt 580598  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 19921262 - 19921226
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggtaga 54  Q
    |||||||||||||| ||||||||||||||||||||||    
T  19921262 aaagggggaccaaatcaaaaccttttcaaaaggtaga 19921226  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 10012957 - 10012924
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggt 51  Q
    ||||||||||| ||||||||||||||||||||||    
T  10012957 aaagggggaccgaaccaaaaccttttcaaaaggt 10012924  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 40679246 - 40679210
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggtaga 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  40679246 aaagggggaccaaaccaaaaccttttcaaaaggtaga 40679210  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 34428549 - 34428513
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggtaga 54  Q
    |||||||||||| ||||||||||||||||||||||||    
T  34428549 aaagggggaccataccaaaaccttttcaaaaggtaga 34428513  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 19280580 - 19280613
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggt 51  Q
    |||||||||||||||||||||||||| |||||||    
T  19280580 aaagggggaccaaaccaaaacctttttaaaaggt 19280613  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 23616835 - 23616868
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggt 51  Q
    ||||||||||||||||||||||||||||||||||    
T  23616835 aaagggggaccaaaccaaaaccttttcaaaaggt 23616868  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 23848234 - 23848267
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggt 51  Q
    ||||||||||||||||||||||||||||||||||    
T  23848234 aaagggggaccaaaccaaaaccttttcaaaaggt 23848267  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 4151908 - 4151875
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggt 51  Q
    ||||||||||||||||||||||||||||| ||||    
T  4151908 aaagggggaccaaaccaaaaccttttcaataggt 4151875  T

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Target: scaffold1544 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1544
Description:

Target: scaffold1544; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 1330 - 1296
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggta 52  Q
    |||||||||| ||||||||||||||||||||||||    
T  1330 aaagggggacaaaaccaaaaccttttcaaaaggta 1296  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 48710824 - 48710790
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggta 52  Q
    ||||||||||||||| |||||||||||||||||||    
T  48710824 aaagggggaccaaactaaaaccttttcaaaaggta 48710790  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 11673479 - 11673512
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggt 51  Q
    ||||||||||| ||||||||||||||||||||||    
T  11673479 aaagggggaccgaaccaaaaccttttcaaaaggt 11673512  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 11306506 - 11306477
Alignment:
Q  22 ggggaccaaaccaaaaccttttcaaaaggt 51  Q
    ||||||||||||||||||||||||||||||    
T  11306506 ggggaccaaaccaaaaccttttcaaaaggt 11306477  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 14774846 - 14774879
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggt 51  Q
    |||||||||| |||||||||||||||||||||||    
T  14774846 aaagggggactaaaccaaaaccttttcaaaaggt 14774879  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 22721126 - 22721159
Alignment:
Q  18 aaagggggaccaaaccaaaaccttttcaaaaggt 51  Q
    ||||||||||||||||||||||||||||| ||||    
T  22721126 aaagggggaccaaaccaaaaccttttcaataggt 22721159  T

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