View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12673_low_27 (Length: 205)
Name: NF12673_low_27
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12673_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 48250789 - 48250613
Alignment:
| Q |
20 |
gggtcttcacaaagaaggaattgtagctgaaactgaagttaaagctttcaaaactcacttgcttgagacccttatcgcgtctcctccggaacaagaacac |
119 |
Q |
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| T |
48250789 |
gggtcttcacaaagaaggaattgtagctgaaactgaagttaaagctttcaaaactcacttgcttgagacccttatcgcgtctcctccggaacaagaacac |
48250690 |
T |
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| Q |
120 |
cccatcataataagagacaagcttctgtttttgcaggttagtatcaatttcagtaccctttgaattcaccagtgaac |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48250689 |
cccatcataataagagacaagcttctgtttttgcaggttagtatcaatttcagtaccctttgaattcaccattgaac |
48250613 |
T |
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