View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12673_low_3 (Length: 490)
Name: NF12673_low_3
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12673_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 14 - 474
Target Start/End: Complemental strand, 48537316 - 48536856
Alignment:
| Q |
14 |
gcataggagaatcatggccaatgacgaaagaaagagcctattttgagtcattggcattgaaagaagagggtaaattgagtcctgatcatgttcctgaagt |
113 |
Q |
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| T |
48537316 |
gcataggagaatcatggccaatgacgaaagaaagagcctattttgagtcattggcattgaaagaagagggtaaattgagtcctgatcatgttcctgaagt |
48537217 |
T |
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| Q |
114 |
gtatcattttgatcgtactatgtccttgattggtatgcgttatttggagccaccacatataattctcagaaaagggttgattgctggtgttgagtatcct |
213 |
Q |
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| T |
48537216 |
gtatcattttgatcgtactatgtctttgattggtatgcgttatttggagccaccacatataattctcagaaaagggttgattgctggtgttgagtatcct |
48537117 |
T |
|
| Q |
214 |
ttgttggctgatcacatgtctgattttatggctaatacactcttctttacttctttgctttaccgttctacgacggagcataaacgggatggtatgaact |
313 |
Q |
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| T |
48537116 |
ttgttggctgatcacatgtctgattttatggctaatacactcttctttacttctttgctttaccgttctacgacggagcataaacgggatggtatgaact |
48537017 |
T |
|
| Q |
314 |
ttcccttttcaccttttcataccctcaacatatttatttatttgcaattaaaagtttgttactctaagtctatttgtccaatacagtgtttgaaagcatc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48537016 |
ttcccttttcaccttttcataccctcaacatatttatttatttgcaattaaaagtttgttactctaagtctatttgtccaatacagtgtttgaaagcatc |
48536917 |
T |
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| Q |
414 |
gtactttccctgaaattcaattgagcttgtttttgtattggaaacattggttccttgatgt |
474 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48536916 |
gtactttccctgaaattcaattgagcttatttttgtattggaaacattggttccttgatgt |
48536856 |
T |
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