View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12673_low_4 (Length: 443)
Name: NF12673_low_4
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12673_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 79 - 421
Target Start/End: Complemental strand, 11484071 - 11483733
Alignment:
| Q |
79 |
caatgtgccttttcagatgttccaaagccaagtaatgcgtttaccaaatatggacagtaagattcaatgcttctaaatagggttgaatgaatctacttgg |
178 |
Q |
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| T |
11484071 |
caatgtgccttttcagatgttccaaagccaagctatgcgtttaccaaatatggacagtaagattcaatgcttctaa-tagggtcgaatgaatgtactcgg |
11483973 |
T |
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| Q |
179 |
agactaactataaaatacattattcttttttgactaacaatgtttatgttcctcttattgtaggacccacaacatgtgggttgtccagcaaagttacaat |
278 |
Q |
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| T |
11483972 |
agactaactataaaatacagcattcttttttgactaacaatatttatgttcctcttattgtaggacccacaacatgt-ggttatccagcaaagatacaat |
11483874 |
T |
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| Q |
279 |
tgattacgatgcattaaatgcatgttgcatatgttccagatcgtagtgcacaatgtttgaaaagcattttacagg-gttcacactttaggtgtatgactt |
377 |
Q |
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| T |
11483873 |
tgattacgatgcattaaatgcatgttgcatgtgttccagatcgtagggcacaaagtttg-aaagcatgttacaggtgttcacactttaggtgtatgactt |
11483775 |
T |
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| Q |
378 |
tggtgtaagaggagtgcataagtttcaactctccatgttaaata |
421 |
Q |
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| T |
11483774 |
tg--gtaagaggagtgcattagtttcaactctccatgttaaata |
11483733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 11477639 - 11477576
Alignment:
| Q |
18 |
aggaacgtacctcaaaaacttgggaaggaattattcttgaaaatgatagtgtagcatttagcaa |
81 |
Q |
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| T |
11477639 |
aggaacgtacctcagaaacttgggaaggaattattcttgaaaatgatagtgtagcatttagcaa |
11477576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 11477456 - 11477328
Alignment:
| Q |
122 |
ccaaatatggacagtaagattcaatgcttcta----aatagggttgaatgaatctacttggagactaactataaaatacattattcttttttgactaaca |
217 |
Q |
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| T |
11477456 |
ccaaatatggacagtaagattcaatgcttctaaatgaatagggtcgaatgaatc-acttggagactaactataaaat--attct--ttttttgactaaca |
11477362 |
T |
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| Q |
218 |
atgtttatgttcctcttattgtaggacccacaacatgt |
255 |
Q |
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| T |
11477361 |
atg-ttatgttcctctta---taggacccccaacatgt |
11477328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 11484199 - 11484135
Alignment:
| Q |
18 |
aggaacgtacctcaaaaacttgggaaggaattattcttgaaaatgatagtgtagcatttagcaat |
82 |
Q |
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| T |
11484199 |
aggaacgtacctcaaaaacctgggaataaattattcttgaaaataatagtgtagcatttagcaat |
11484135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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