View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12673_low_7 (Length: 351)

Name: NF12673_low_7
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12673_low_7
NF12673_low_7
[»] chr1 (27 HSPs)
chr1 (20-337)||(2896073-2896388)
chr1 (31-145)||(1815242-1815353)
chr1 (30-144)||(5898228-5898339)
chr1 (116-186)||(398810-398880)
chr1 (62-177)||(9709773-9709885)
chr1 (61-144)||(36878447-36878527)
chr1 (30-119)||(40181879-40181968)
chr1 (27-187)||(10577694-10577851)
chr1 (78-166)||(15641040-15641125)
chr1 (30-108)||(43492456-43492534)
chr1 (30-107)||(18190070-18190147)
chr1 (30-107)||(40258895-40258972)
chr1 (27-107)||(51410045-51410125)
chr1 (54-113)||(30749854-30749913)
chr1 (54-113)||(30771305-30771364)
chr1 (39-143)||(29163352-29163453)
chr1 (20-78)||(32461405-32461463)
chr1 (116-166)||(40917715-40917765)
chr1 (116-157)||(5376545-5376586)
chr1 (116-165)||(10572634-10572683)
chr1 (116-165)||(48040507-48040556)
chr1 (116-188)||(609503-609575)
chr1 (30-78)||(9828104-9828152)
chr1 (116-144)||(17831576-17831604)
chr1 (59-119)||(28674808-28674868)
chr1 (63-145)||(39953141-39953220)
chr1 (126-186)||(48548017-48548077)
[»] chr6 (21 HSPs)
chr6 (32-155)||(9658854-9658974)
chr6 (30-166)||(34595098-34595231)
chr6 (62-175)||(5732504-5732614)
chr6 (116-186)||(7938060-7938130)
chr6 (62-166)||(13851700-13851801)
chr6 (30-145)||(28152084-28152195)
chr6 (63-145)||(7265588-7265667)
chr6 (59-141)||(19040341-19040420)
chr6 (69-166)||(9027142-9027236)
chr6 (116-175)||(16766652-16766711)
chr6 (39-143)||(7377966-7378067)
chr6 (116-186)||(8777018-8777088)
chr6 (116-186)||(9107415-9107485)
chr6 (116-165)||(3398584-3398633)
chr6 (30-145)||(17841551-17841663)
chr6 (30-78)||(9107321-9107369)
chr6 (116-175)||(426559-426618)
chr6 (116-157)||(12696297-12696338)
chr6 (116-173)||(18803556-18803613)
chr6 (50-107)||(24645501-24645558)
chr6 (30-63)||(31959214-31959247)
[»] chr7 (27 HSPs)
chr7 (50-186)||(25481846-25481979)
chr7 (20-166)||(598172-598315)
chr7 (30-108)||(32287425-32287503)
chr7 (21-144)||(5835233-5835353)
chr7 (30-119)||(27093375-27093464)
chr7 (30-119)||(27184837-27184926)
chr7 (50-143)||(20549778-20549868)
chr7 (50-144)||(22484011-22484102)
chr7 (70-186)||(17851375-17851488)
chr7 (116-177)||(11061121-11061182)
chr7 (116-165)||(27945006-27945055)
chr7 (87-150)||(32308100-32308160)
chr7 (71-141)||(2948672-2948739)
chr7 (116-164)||(13770657-13770705)
chr7 (87-157)||(22868015-22868082)
chr7 (30-78)||(26033412-26033460)
chr7 (61-113)||(39138458-39138510)
chr7 (20-119)||(21880160-21880259)
chr7 (30-73)||(43027426-43027469)
chr7 (116-186)||(1433398-1433468)
chr7 (120-166)||(11722147-11722193)
chr7 (30-162)||(12278797-12278932)
chr7 (31-119)||(1401033-1401119)
chr7 (116-165)||(5235951-5236000)
chr7 (116-157)||(24105651-24105692)
chr7 (116-165)||(24339607-24339656)
chr7 (87-157)||(29787388-29787455)
[»] chr4 (17 HSPs)
chr4 (30-166)||(23292948-23293081)
chr4 (31-119)||(8423681-8423769)
chr4 (20-177)||(35157937-35158091)
chr4 (28-78)||(30982827-30982877)
chr4 (30-165)||(12895236-12895368)
chr4 (30-166)||(49430990-49431123)
chr4 (31-118)||(9996849-9996936)
chr4 (116-187)||(20633428-20633499)
chr4 (26-76)||(903984-904034)
chr4 (69-119)||(4672086-4672136)
chr4 (30-108)||(35161055-35161133)
chr4 (116-145)||(17345460-17345489)
chr4 (87-186)||(24343451-24343547)
chr4 (134-186)||(21873426-21873478)
chr4 (134-186)||(21929287-21929339)
chr4 (116-144)||(35723430-35723458)
chr4 (51-107)||(54580006-54580062)
[»] chr3 (13 HSPs)
chr3 (31-145)||(18426934-18427045)
chr3 (59-165)||(8842295-8842397)
chr3 (30-107)||(40993297-40993374)
chr3 (39-165)||(4466571-4466694)
chr3 (30-98)||(23657768-23657836)
chr3 (27-166)||(28917965-28918103)
chr3 (62-166)||(8383221-8383322)
chr3 (116-186)||(24205086-24205156)
chr3 (69-166)||(38731182-38731276)
chr3 (116-166)||(10335331-10335381)
chr3 (20-78)||(14209173-14209231)
chr3 (87-186)||(3164044-3164140)
chr3 (86-165)||(11610486-11610562)
[»] chr8 (16 HSPs)
chr8 (32-119)||(14134707-14134794)
chr8 (54-144)||(4786324-4786411)
chr8 (27-165)||(31556962-31557096)
chr8 (116-187)||(22651919-22651990)
chr8 (40-78)||(29447504-29447542)
chr8 (116-186)||(29510349-29510419)
chr8 (116-165)||(25192392-25192441)
chr8 (27-107)||(3951495-3951575)
chr8 (39-119)||(20679366-20679446)
chr8 (30-78)||(22652036-22652084)
chr8 (30-78)||(29510255-29510303)
chr8 (30-104)||(8293848-8293922)
chr8 (116-165)||(4673470-4673519)
chr8 (30-79)||(29447061-29447110)
chr8 (63-145)||(34897070-34897149)
chr8 (30-118)||(40332200-40332288)
[»] scaffold0652 (1 HSPs)
scaffold0652 (30-177)||(424-568)
[»] chr5 (23 HSPs)
chr5 (27-119)||(30502347-30502439)
chr5 (27-119)||(30542690-30542782)
chr5 (20-107)||(43564901-43564988)
chr5 (30-166)||(17123012-17123144)
chr5 (30-162)||(21191018-21191147)
chr5 (116-163)||(15410493-15410540)
chr5 (116-186)||(15382421-15382491)
chr5 (116-166)||(21137653-21137703)
chr5 (116-186)||(21522694-21522764)
chr5 (116-186)||(21533260-21533330)
chr5 (116-165)||(19820439-19820488)
chr5 (116-165)||(22013379-22013428)
chr5 (30-165)||(26312734-26312866)
chr5 (69-145)||(3966488-3966561)
chr5 (69-177)||(13287400-13287505)
chr5 (59-139)||(28588665-28588742)
chr5 (116-149)||(6035464-6035497)
chr5 (30-83)||(39268560-39268613)
chr5 (116-144)||(2436908-2436936)
chr5 (126-186)||(6401442-6401502)
chr5 (71-119)||(17593725-17593773)
chr5 (116-144)||(27144449-27144477)
chr5 (30-78)||(39698601-39698649)
[»] scaffold0053 (1 HSPs)
scaffold0053 (31-175)||(8753-8894)
[»] chr2 (14 HSPs)
chr2 (66-177)||(18276474-18276582)
chr2 (30-157)||(18840975-18841099)
chr2 (27-119)||(5367200-5367292)
chr2 (28-144)||(31808063-31808176)
chr2 (30-107)||(2438681-2438758)
chr2 (30-145)||(15972858-15972970)
chr2 (27-107)||(5040754-5040834)
chr2 (53-155)||(20242712-20242811)
chr2 (87-155)||(21616737-21616802)
chr2 (34-157)||(21091696-21091816)
chr2 (30-145)||(37558962-37559074)
chr2 (71-145)||(23718011-23718082)
chr2 (71-145)||(24105683-24105754)
chr2 (34-140)||(37411210-37411313)
[»] scaffold0027 (1 HSPs)
scaffold0027 (69-186)||(46626-46740)
[»] scaffold0022 (1 HSPs)
scaffold0022 (28-119)||(90851-90942)
[»] scaffold0003 (1 HSPs)
scaffold0003 (116-166)||(241558-241608)
[»] scaffold0007 (1 HSPs)
scaffold0007 (116-177)||(225313-225374)
[»] scaffold0116 (1 HSPs)
scaffold0116 (119-186)||(9842-9909)
[»] scaffold0223 (1 HSPs)
scaffold0223 (116-165)||(20137-20186)
[»] scaffold0050 (1 HSPs)
scaffold0050 (30-107)||(70298-70375)
[»] scaffold0004 (1 HSPs)
scaffold0004 (116-145)||(92792-92821)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 2896073 - 2896388
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||       
T  2896073 gacacttcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattatgtgattttctcaaatta--- 2896169  T
Q  120 ttagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatagccacatactcatgatttatggctgctcttattt 219  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2896170 ttagcggtgtcggcgtgtcagtgtccgtgttgtgtccgttgtccgtgactgtatccgttcttcatagccacatactcatgatttatggctgctcttattt 2896269  T
Q  220 tctcaaatatttcttcatgtcttgcatgttccttgtgtccactgtg-aattgtgtcataccatcttttgtttcctcaatcctaaagctttggtcgtggcc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2896270 tctcaaatatttcttcatgtcttgcatgttccttgtgtccactgtgcaattgtgtcataccatcttttgtttcctcaatcctaaagctttggtcgtggcc 2896369  T
Q  319 tatatttacatactacagt 337  Q
    |||||||||||||||||||    
T  2896370 tatatttacatactacagt 2896388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 1815353 - 1815242
Alignment:
Q  31 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtc 130  Q
    ||||||| |||||||||| |||||||  ||||||||| ||||||||||  | ||  |||||||||||| ||||||||  ||||| |||||| |   ||||    
T  1815353 gattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaattatgtgattttttaaaataattatttg---tgtc 1815257  T
Q  131 ggcgtgtcagtgtcc 145  Q
    |||||||||||||||    
T  1815256 ggcgtgtcagtgtcc 1815242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 5898228 - 5898339
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||||  |||||||||| | |||||| |||||||||||||||||||  |||||  |||||||||||| ||||||||   |    ||||||||||||||    
T  5898228 ggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatgtgattttttca---gattattagcggtgt 5898324  T
Q  130 cggcgtgtcagtgtc 144  Q
    |||||| ||||||||    
T  5898325 cggcgtctcagtgtc 5898339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 398810 - 398880
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||| | | |||||||| ||| ||||    
T  398810 attattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgcgtccgtatccgtgcttcatag 398880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 9709885 - 9709773
Alignment:
Q  62 cgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgt 161  Q
    |||||| |||||||||| |||||  ||||  |||||| |||||||||  |||||||||   ||||||| ||| ||||||||||| ||| ||||| |||||    
T  9709885 cgtgtccgacaccgacacatataattacaacgaattatgtgattttctcaaattatta---gcggtgtaggcatgtcagtgtccgtgtcgtgtctgatgt 9709789  T
Q  162 ccgtgactgtatccgt 177  Q
    || || ||||||||||    
T  9709788 ccatgtctgtatccgt 9709773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 36878527 - 36878447
Alignment:
Q  61 tcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtc 144  Q
    ||||||| ||||||||||  ||||  |||||||||||| |||||||||  |||||||||   ||||||||||||||||||||||    
T  36878527 tcgtgtcagacaccgacacctataattacactgaattatgtgattttctcaaattatta---gcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 40181968 - 40181879
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||| |||||||||| | |||||| ||| ||||| |||||||| | |||||  |||||||||||| |||||||||  |||||||||    
T  40181968 ggattaggcgtgtcccggtgtaggacacgtgttgtgtccgacaccgatacatataattacactgaattatgtgattttctcaaattatta 40181879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 10577694 - 10577851
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcgg 126  Q
    ||||||| ||| ||||||| || || |||||  |||||||| | | |||||| |||||  ||||||| |||  ||||||||| ||||  ||||   || |    
T  10577694 cttggataaggcgtgtccccgtgtcagacacgcgtcgtgtccgcccccgacacatataattacactgcattttgtgattttctaaaaaaatta---gctg 10577790  T
Q  127 tgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatagc 187  Q
    |||||||||||| |||||| ||| ||||||| |||||||| | |||||||| ||| |||||    
T  10577791 tgtcggcgtgtcggtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcatagc 10577851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 15641040 - 15641125
Alignment:
Q  78 atatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||| |||||||||| | |||||||||  |||||||||   || |||||||| ||||||||||| |||  |||||||||||||||    
T  15641040 atatatagttacactgaatcatgtgattttcttaaattatta---gcagtgtcggcatgtcagtgtccgtgtcatgtccgatgtccgtg 15641125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 43492456 - 43492534
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttc 108  Q
    |||||||| |||| ||||| |||||||  ||| |||||||||||||||| | |||  ||||| ||||||||||||||||    
T  43492456 ggattaggcgtgtgccggtgtcggacatgtgttgtgtctgacaccgacacacataattacaccgaattacgtgattttc 43492534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 18190070 - 18190147
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    ||||||||||||||||||| |||||||| ||| |||||||||| |||||  | ||  |||||||||||| || |||||    
T  18190070 ggattaggtgtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaattatgtaatttt 18190147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 40258895 - 40258972
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    |||||||| |||||| ||| |||||||  ||||||||||||||||||||  | ||  |||||||||||| ||||||||    
T  40258895 ggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgatttt 40258972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 51410125 - 51410045
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    ||||||||||| ||||| |||| ||||| || ||||||||| ||||||||||  | ||  |||||||||||| ||||||||    
T  51410125 cttggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 51410045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 30749913 - 30749854
Alignment:
Q  54 acacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaa 113  Q
    |||||||| ||||| |||||||||| |||||  |||||||||||| ||||||||| ||||    
T  30749913 acacatgtggtgtccgacaccgacacatataattacactgaattatgtgattttctaaaa 30749854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 30771364 - 30771305
Alignment:
Q  54 acacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaa 113  Q
    |||||||| ||||| |||||||||| |||||  |||||||||||| ||||||||| ||||    
T  30771364 acacatgtggtgtccgacaccgacacatataattacactgaattatgtgattttctaaaa 30771305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 29163352 - 29163453
Alignment:
Q  39 gtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtc 138  Q
    |||||||||| || | ||| ||||||||| |||||||||| |||||  || | ||||||| |||||||||  ||||| |||   ||||||||||||||||    
T  29163352 gtgtcccggtgtcaggcacgtgtcgtgtccgacaccgacacatataattaaattgaattatgtgattttcctaaattttta---gcggtgtcggcgtgtc 29163448  T
Q  139 agtgt 143  Q
     ||||    
T  29163449 tgtgt 29163453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 32461405 - 32461463
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    ||||| |||||||||||| ||||||| || || ||||| ||||||||| ||||||||||    
T  32461405 gacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgaca 32461463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 40917765 - 40917715
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    ||||||||| |||||||||||||||| ||| ||| ||||||| ||||||||    
T  40917765 attattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtg 40917715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 5376545 - 5376586
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccg 157  Q
    |||||||||||||||||||||| ||||||| ||| |||||||    
T  5376545 attattagcggtgtcggcgtgttagtgtccgtgtcgtgtccg 5376586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 10572634 - 10572683
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    |||||||| ||||||||||||||||||| | ||| ||||||| |||||||    
T  10572634 attattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgt 10572683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 48040507 - 48040556
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||| | |||||||||||||||||||| ||| ||||||| |||||||    
T  48040507 attattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 48040556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 609503 - 609575
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatagcc 188  Q
    |||||||| |||||||||||||||||||   ||| |||||||||||| ||| | |||| ||| ||| ||||||    
T  609503 attattagtggtgtcggcgtgtcagtgttgatgtcgtgtccgatgtctgtgtccgtatacgtgcttcatagcc 609575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 9828152 - 9828104
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    |||||||  |||||||||| |||||||| ||||||||||||||| ||||    
T  9828152 ggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggaca 9828104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 17831576 - 17831604
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtc 144  Q
    |||||||||||||||||||||||||||||    
T  17831576 attattagcggtgtcggcgtgtcagtgtc 17831604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 28674868 - 28674808
Alignment:
Q  59 tgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||||||||| |||||||||  || ||||||||| || ||||||  |||||||||    
T  28674868 tgtcgtgtctgacaccaacatatataattatactgaattatgtaattttctcaaattatta 28674808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 39953141 - 39953220
Alignment:
Q  63 gtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtcc 145  Q
    ||||| |||||||||| ||| |  |||||| ||||| ||||||||| |||||||   |||||||||||||||| || ||||||    
T  39953141 gtgtccgacaccgacacatacaattacactaaattatgtgattttctaaaatta---ttagcggtgtcggcgtttccgtgtcc 39953220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 48548017 - 48548077
Alignment:
Q  126 gtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||||||||||| ||||| | ||||||||| |||||||| | |||||||| ||| ||||    
T  48548017 gtgtcggcgtgtcattgtccgtattgtgtccggtgtccgtgtccgtatccgtgcttcatag 48548077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 9658974 - 9658854
Alignment:
Q  32 attaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcg 131  Q
    |||||| |||| ||||| || ||||| |||||||||| ||||||||| |||||  |||||||||||| |||||||||  ||   ||||||||||||||||    
T  9658974 attaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaa---attattagcggtgtcg 9658878  T
Q  132 gcgtgtcagtgtccttgttgtgtc 155  Q
    |||||||||||||| ||| |||||    
T  9658877 gcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 34595231 - 34595098
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    ||||||||||||||||||| || ||||| ||||||||| ||||||||||  | ||  |||||||||||| ||||||||   ||   ||||||||  ||||    
T  34595231 ggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaa---attattagttgtgt 34595135  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||||| ||||| ||| ||||||| ||||||||    
T  34595134 cggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 34595098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 5732504 - 5732614
Alignment:
Q  62 cgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgt 161  Q
    |||||| |||||||||| |||||  |||||| || || |||||||||  |||||||||    |||||||||||||||||||||| ||| ||||||  |||    
T  5732504 cgtgtccgacaccgacacatataattacactaaaatatgtgattttctcaaattattaa---cggtgtcggcgtgtcagtgtccatgtcgtgtccagtgt 5732600  T
Q  162 ccgtgactgtatcc 175  Q
    ||||| ||||||||    
T  5732601 ccgtgtctgtatcc 5732614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 7938130 - 7938060
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| |||||||| | |||||||| ||| ||||    
T  7938130 attattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatccgtgcttcatag 7938060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 13851801 - 13851700
Alignment:
Q  62 cgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgt 161  Q
    |||||| |||| ||||| |||||  ||||||||||||||| ||||||  |||||||||   ||||||||| ||||||||||||| ||| |||| | ||||    
T  13851801 cgtgtcagacatcgacacatataattacactgaattacgttattttctcaaattatta---gcggtgtcgacgtgtcagtgtccgtgtcgtgttcaatgt 13851705  T
Q  162 ccgtg 166  Q
    |||||    
T  13851704 ccgtg 13851700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 28152195 - 28152084
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    ||||||||  ||||||||| |||||||| ||||||||| ||||||||||  | ||  |||||||||||| ||||||||  |||    ||||||||  |||    
T  28152195 ggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttttcaaa----ttattagctttgt 28152100  T
Q  130 cggcgtgtcagtgtcc 145  Q
    ||||||||||||||||    
T  28152099 cggcgtgtcagtgtcc 28152084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 7265588 - 7265667
Alignment:
Q  63 gtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtcc 145  Q
    ||||| |||||||||| |||||  |||||||||||| |||||||||  ||   |||||||||||||| |||||||||||||||    
T  7265588 gtgtccgacaccgacacatataattacactgaattatgtgattttctcaa---attattagcggtgttggcgtgtcagtgtcc 7265667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 19040420 - 19040341
Alignment:
Q  59 tgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagt 141  Q
    ||||||||| ||||| |||| |||||  |||||||||||| |||||||||  ||   ||||||||||||||||||||||||||    
T  19040420 tgtcgtgtccgacacagacacatataattacactgaattatgtgattttctcaa---attattagcggtgtcggcgtgtcagt 19040341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 9027236 - 9027142
Alignment:
Q  69 gacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||||| |||||  ||||| |||||| |||||| ||  |||||||||   ||||||||||||||||||||||| ||| |||||||  |||||||    
T  9027236 gacaccgacacatataattacacggaattatgtgattatctcaaattatta---gcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgtg 9027142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 16766711 - 16766652
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatcc 175  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| |||||||| | ||||||    
T  16766711 attattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatcc 16766652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 7378067 - 7377966
Alignment:
Q  39 gtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtc 138  Q
    |||||||||| |||||  ||||||||||| |||||||||| |||||  |||| ||||||| |||||||||  ||   ||| ||||||||||||| |||||    
T  7378067 gtgtcccggtgtcggatgcatgtcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaa---atttttagcggtgtcggggtgtc 7377971  T
Q  139 agtgt 143  Q
     ||||    
T  7377970 tgtgt 7377966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 8777018 - 8777088
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||  |||||||||||||||||||| ||| ||||||| |||||||| | |||||||| ||| ||||    
T  8777018 attattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgtatccgtgcttcatag 8777088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 9107415 - 9107485
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||| |||||||||||| ||||||| ||| ||||||| |||||||| | |||||||| ||| ||||    
T  9107415 attattagctgtgtcggcgtgttagtgtccgtgtcgtgtccggtgtccgtgtcagtatccgtgcttcatag 9107485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 3398633 - 3398584
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||| |||||||||||||||||||| ||| |||| ||||||||||    
T  3398633 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgt 3398584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 17841551 - 17841663
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||||| ||||| | || |||||||||||||||||| ||||||| ||  | ||  |||||| ||||| ||||||||   ||   ||||||||| ||||    
T  17841551 ggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacaccgtcacttgtaattacactaaattatgtgattttttcaa---attattagctgtgt 17841647  T
Q  130 cggcgtgtcagtgtcc 145  Q
    ||||||||||||||||    
T  17841648 cggcgtgtcagtgtcc 17841663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 9107321 - 9107369
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    ||||||||||||||||||| ||||||||| || ||||| ||||||||||    
T  9107321 ggattaggtgtgtcccggtgtcggacacacgttgtgtccgacaccgaca 9107369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 426559 - 426618
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatcc 175  Q
    ||||||| | |||||||||||||||||||| ||| ||||||| | |||||| ||||||||    
T  426559 attattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtctgtatcc 426618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 12696338 - 12696297
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccg 157  Q
    ||||||||| |||||||||||||||||||| ||| |||||||    
T  12696338 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 12696297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 18803556 - 18803613
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtat 173  Q
    |||||||||||||||||| |||||||||   ||| ||||||||||||| || ||||||    
T  18803556 attattagcggtgtcggcatgtcagtgtttgtgtcgtgtccgatgtccatgtctgtat 18803613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 24645558 - 24645501
Alignment:
Q  50 tcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    |||||||| ||||||||||||||||||||  | || ||| ||||||||| ||||||||    
T  24645558 tcggacacgtgtcgtgtctgacaccgacacttgtaactatactgaattatgtgatttt 24645501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 31959247 - 31959214
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcg 63  Q
    ||||||||||||||||||| ||||||||||||||    
T  31959247 ggattaggtgtgtcccggtgtcggacacatgtcg 31959214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 186
Target Start/End: Complemental strand, 25481979 - 25481846
Alignment:
Q  50 tcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgt 149  Q
    |||||||||| ||||||| |||||| |||  | ||  |||||||||||| ||||||||   ||   ||||||||| |||||||||||||| ||||| |||    
T  25481979 tcggacacatatcgtgtccgacaccaacacttgtaattacactgaattatgtgattttttcaa---attattagctgtgtcggcgtgtcattgtccatgt 25481883  T
Q  150 tgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||||||||||| |||||||||| ||| ||||    
T  25481882 tgtgtccgatgtccgtgtctgtatccgtgcttcatag 25481846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 598315 - 598172
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    ||||| ||| |||||||| |||||||||| |||||||| ||||||||||||||||||||  || |  |||| | |||||||||||||||  ||   ||||    
T  598315 gacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattacatttaattacgtgattttcttaa---atta 598219  T
Q  120 ttagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    ||||||||||||  |||||||||||| |||  |||| | ||||||||    
T  598218 ttagcggtgtcgatgtgtcagtgtccgtgtcatgtctggtgtccgtg 598172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 32287425 - 32287503
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttc 108  Q
    ||||||||||||||||||| |||||||| |||| |||| |||||||||| |||||  | |||||||||| |||||||||    
T  32287425 ggattaggtgtgtcccggtgtcggacacttgtcatgtccgacaccgacacatatacttgcactgaattatgtgattttc 32287503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 5835353 - 5835233
Alignment:
Q  21 acacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattat 120  Q
    |||| ||| |||||| | |||||||||| || |||||||||| ||||||||||||||| |||||  |||||||||||| || ||||||  ||   | |||    
T  5835353 acacttctcggattaagcgtgtcccggtatcagacacatgtcatgtctgacaccgacacatataattacactgaattatgttattttctcaa---actat 5835257  T
Q  121 tagcggtgtcggcgtgtcagtgtc 144  Q
    ||| ||||||||||| ||||||||    
T  5835256 tagtggtgtcggcgtatcagtgtc 5835233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 27093375 - 27093464
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||||||||  || ||||||||||||||||||| ||||||||  |||||  |||||| ||||| |||||||||  |||||||||    
T  27093375 ggattaggtgtgtcctagtgtcggacacatgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattatta 27093464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 27184926 - 27184837
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||||||||  || ||||||||||||||||||| ||||||||  |||||  |||||| ||||| |||||||||  |||||||||    
T  27184926 ggattaggtgtgtcctagtgtcggacacatgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattatta 27184837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 20549868 - 20549778
Alignment:
Q  50 tcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgt 143  Q
    |||||||  ||| ||||| |||||||||| |||||  ||||||||||||||||||||||  ||   ||||||||||||||||| ||||||||||    
T  20549868 tcggacatgtgttgtgtccgacaccgacacatataattacactgaattacgtgattttctcaa---attattagcggtgtcggtgtgtcagtgt 20549778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 22484102 - 22484011
Alignment:
Q  50 tcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtc 144  Q
    |||||||  |||| ||||||||||||||| |||||  || ||||||||| |  |||||| ||||||||||   ||||||||||||||||||||||    
T  22484102 tcggacatgtgtcatgtctgacaccgacacatataattatactgaattatgcaattttctaaaattatta---gcggtgtcggcgtgtcagtgtc 22484011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 17851488 - 17851375
Alignment:
Q  70 acaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgact 169  Q
    |||| |||| |||||  |||||||||||| ||||||||| ||||||||||   ||||| |||  ||||| || ||| ||| ||||||| |||||||| ||    
T  17851488 acacagacacatataattacactgaattatgtgattttctaaaattatta---gcggtatcgatgtgtcggtatccatgtcgtgtccggtgtccgtgtct 17851392  T
Q  170 gtatccgttcttgatag 186  Q
    |||||||| ||| ||||    
T  17851391 gtatccgtgcttcatag 17851375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 11061121 - 11061182
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgt 177  Q
    ||||||||| ||||||| |||||||||||| ||| || ||||||||||||| | ||||||||    
T  11061121 attattagctgtgtcggtgtgtcagtgtccgtgtcgtatccgatgtccgtgtccgtatccgt 11061182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 27945055 - 27945006
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    |||||||| ||||||||||||||||||||| ||| ||||||| |||||||    
T  27945055 attattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 27945006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 32308160 - 32308100
Alignment:
Q  87 tacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgtt 150  Q
    |||||||||||| |||||||||  |||||||||   ||||||||||||||||||||||| ||||    
T  32308160 tacactgaattatgtgattttctcaaattatta---gcggtgtcggcgtgtcagtgtccatgtt 32308100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 2948739 - 2948672
Alignment:
Q  71 caccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagt 141  Q
    |||||||| |||||  |||||| ||||||||||||||| |||   ||||| ||||||||||||||||||||    
T  2948739 caccgacacatataattacactaaattacgtgattttctaaa---attatcagcggtgtcggcgtgtcagt 2948672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 13770705 - 13770657
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccg 164  Q
    ||||||||| |||||||||| ||||||||| ||| ||||||||||||||    
T  13770705 attattagctgtgtcggcgtatcagtgtccgtgtcgtgtccgatgtccg 13770657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 22868082 - 22868015
Alignment:
Q  87 tacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccg 157  Q
    |||||||||||| |||||||||  |   ||||||||| ||||||||||||||||||||  |||||||||||    
T  22868082 tacactgaattatgtgattttctca---tattattagtggtgtcggcgtgtcagtgtcggtgttgtgtccg 22868015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 26033412 - 26033460
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    |||||||||||||| |||| |||||||| |||| |||||||||||||||    
T  26033412 ggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgaca 26033460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 39138510 - 39138458
Alignment:
Q  61 tcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaa 113  Q
    ||||||| ||||||||||||||||  |||||||||||| ||||||||| ||||    
T  39138510 tcgtgtccgacaccgacatatataattacactgaattatgtgattttctaaaa 39138458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 21880259 - 21880160
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    ||||| ||| |||||||| |||||| ||| |||||||  ||||||||| ||||||||||  | ||  |||||||||||| || ||||||  |||||||||    
T  21880259 gacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaattatta 21880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 43027426 - 43027469
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacac 73  Q
    |||||||| |||||||||| |||||||| |||||||||||||||    
T  43027426 ggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacac 43027469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 1433468 - 1433398
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||| |||||||||||||||| ||||| ||| |||| || |||||||| | |||||||| ||| ||||    
T  1433468 attattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgtgcccgtatccgtgcttcatag 1433398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 11722147 - 11722193
Alignment:
Q  120 ttagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  11722147 ttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtg 11722193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 12278932 - 12278797
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcg-tgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcg--- 125  Q
    ||||||||||||||||||| || |||||  || | |||| ||||| |||| |||||  |||||||||||| || ||||||  |||||||||| || |       
T  12278932 ggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacac-gacacatataattacactgaattatgtcattttcttaaattattatcagtgttg 12278834  T
Q  126 gtgtcggcgtgtcagtgtccttgttgtgtccgatgtc 162  Q
    |||| ||| ||||||||||| ||| ||||||||||||    
T  12278833 gtgttggcttgtcagtgtccgtgtcgtgtccgatgtc 12278797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 1401119 - 1401033
Alignment:
Q  31 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||||||||| | |||||||  ||||||||| |||||||| |  ||||  |||||||||||| |||| ||||  |||||||||    
T  1401119 gattaggtgtgtcccgatgtcggaca--tgtcgtgtcggacaccgatacttataattacactgaattatgtgagtttctcaaattatta 1401033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 5236000 - 5235951
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    |||||||||||||||| ||||||||||||  ||| |||||| ||||||||    
T  5236000 attattagcggtgtcgacgtgtcagtgtctgtgtcgtgtccaatgtccgt 5235951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 24105692 - 24105651
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccg 157  Q
    ||||||||| |||||||||||||||||||| ||| |||||||    
T  24105692 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 24105651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 24339656 - 24339607
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||| |||||||||||||| ||||| ||| ||||||| |||||||    
T  24339656 attattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtccgt 24339607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 29787388 - 29787455
Alignment:
Q  87 tacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccg 157  Q
    |||||||||||| |||||||||  ||||||   |||||||||||||||||| | ||||| |||||| ||||    
T  29787388 tacactgaattatgtgattttctcaaatta---ttagcggtgtcggcgtgttaatgtccgtgttgtatccg 29787455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 23292948 - 23293081
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||||| |||||||||| |||||||| ||||||||| ||||||||||  | ||  || ||||||||| ||||||||   |||||||||   || ||||    
T  23292948 ggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaattatgtgattttttcaaattatta---gctgtgt 23293044  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||||| ||||| ||| ||||||| ||||||||    
T  23293045 cggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 23293081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 8423681 - 8423769
Alignment:
Q  31 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    ||||||| |||||||||| |||||||  ||||||||| ||||||||||| ||||  |||||||||||| |||||||||  |||||||||    
T  8423681 gattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaattatgtgattttctcaaattatta 8423769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 35157937 - 35158091
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    ||||| ||| |||||| | |||| ||||| | |||||  ||||||||| ||||||||||  ||||  |||||| ||||| ||||||||   |||||||||    
T  35157937 gacacttctcggattaagcgtgttccggtgttggacatgtgtcgtgtcagacaccgacacttataattacactaaattatgtgatttttccaaattatta 35158036  T
Q  120 ttagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgt 177  Q
     | |||   ||||||||||||||||| ||||||||||| |||||||| | ||||||||    
T  35158037 gttgcg---tcggcgtgtcagtgtccgtgttgtgtccggtgtccgtgtccgtatccgt 35158091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 30982827 - 30982877
Alignment:
Q  28 ttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    |||||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  30982827 ttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgaca 30982877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 12895236 - 12895368
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||||| |||||||| | ||||| |||||||||||| ||||||||||  ||||  |||||  ||||| ||||||||   |||||||||||    ||||    
T  12895236 ggattaggcgtgtcccgatgtcggatacatgtcgtgtccgacaccgacacttataattacacaaaattatgtgattttttcaaattattatt---tgtgt 12895332  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    |||||||||| ||| | ||| || |||| |||||||    
T  12895333 cggcgtgtcattgttcgtgtcgtatccggtgtccgt 12895368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 49431123 - 49430990
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||| ||| |||||||||| | |||||| ||||||||| ||||||||||  | ||  |||||||||||| ||||||||    ||  ||||||||| ||||    
T  49431123 ggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaattatgtgatttttttcaa--attattagctgtgt 49431026  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||||| |||||  || ||||||| ||||||||    
T  49431025 cggcgtgtcactgtccgagtcgtgtccg-tgtccgtg 49430990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 9996936 - 9996849
Alignment:
Q  31 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatt 118  Q
    |||||||||||| || || |||||||| |||  ||||||||||||| | |||||  || ||||||||| |||||||||  ||||||||    
T  9996936 gattaggtgtgttccagtgtcggacacgtgttatgtctgacaccgagacatataattatactgaattatgtgattttctcaaattatt 9996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 20633499 - 20633428
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatagc 187  Q
    |||||||||||||||| ||||||||||||| | | ||||| | |||||||| | |||||||| ||| |||||    
T  20633499 attattagcggtgtcgacgtgtcagtgtccgtatcgtgtctggtgtccgtgtccgtatccgtgcttcatagc 20633428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 904034 - 903984
Alignment:
Q  26 tcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccga 76  Q
    ||||||||||| |||||||| || ||||||||||||||||||  |||||||    
T  904034 tcttggattagatgtgtcccagtgtcggacacatgtcgtgtccaacaccga 903984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 4672086 - 4672136
Alignment:
Q  69 gacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||| ||||||||||||||||||| || ||||||  |||||||||    
T  4672086 gacaccgacacatatagctacactgaattatgtaattttcccaaattatta 4672136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 35161133 - 35161055
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttc 108  Q
    ||||||||||||| ||||| |||||||| ||||||||| ||| | || |  ||||  |||||||||||| |||||||||    
T  35161133 ggattaggtgtgttccggtgtcggacacgtgtcgtgtccgactctgatacttataattacactgaattatgtgattttc 35161055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 17345460 - 17345489
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtcc 145  Q
    ||||||||||||||||||||||||||||||    
T  17345460 attattagcggtgtcggcgtgtcagtgtcc 17345489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 24343547 - 24343451
Alignment:
Q  87 tacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||||||||| || ||||||  ||||||||||   | ||||||||||||| | |||| ||| ||||||| |||||||| |||| ||||| ||| ||||    
T  24343547 tacactgaattatgtaattttctcaaattattat---ccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcatag 24343451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 21873426 - 21873478
Alignment:
Q  134 gtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||||||||| ||| |||||| ||||||||| |||||||||| ||| ||||    
T  21873426 gtgtcagtgtccgtgtcgtgtccaatgtccgtgtctgtatccgtgcttaatag 21873478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 21929287 - 21929339
Alignment:
Q  134 gtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||||||||| ||| |||||| ||||||||| |||||||||| ||| ||||    
T  21929287 gtgtcagtgtccgtgtcgtgtccaatgtccgtgtctgtatccgtgcttaatag 21929339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 35723430 - 35723458
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtc 144  Q
    |||||||||||||||||||||||||||||    
T  35723430 attattagcggtgtcggcgtgtcagtgtc 35723458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 54580006 - 54580062
Alignment:
Q  51 cggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    ||||||| ||||||||| ||||||||||  ||||  |||||||||||| ||||||||    
T  54580006 cggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgtgatttt 54580062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 18427045 - 18426934
Alignment:
Q  31 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtc 130  Q
    ||||||||||||||||||  ||||||| |||||| || ||||||||||||||||  ||||| |||||| ||||||||   ||   |||||||| ||||||    
T  18427045 gattaggtgtgtcccggtgccggacacgtgtcgtatccgacaccgacatatataattacaccgaattatgtgattttttgaa---attattagtggtgtc 18426949  T
Q  131 ggcgtgtcagtgtcc 145  Q
    |||||||| ||||||    
T  18426948 ggcgtgtccgtgtcc 18426934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 8842397 - 8842295
Alignment:
Q  59 tgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccga 158  Q
    ||||||||||||||||||||||||||  |||||  ||||| ||||||||||||    |||||||||||||||||| ||||| | ||| ||| || ||||     
T  8842397 tgtcgtgtctgacaccgacatatataattacaccaaattatgtgattttcaaa----attattagcggtgtcggcatgtcaatttccgtgtcgtatccgg 8842302  T
Q  159 tgtccgt 165  Q
    |||||||    
T  8842301 tgtccgt 8842295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 40993297 - 40993374
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    |||||||| |||||||||| |||||||  ||||||||| |||||||||| |||||  |||||||||||| ||||||||    
T  40993297 ggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgatttt 40993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 4466571 - 4466694
Alignment:
Q  39 gtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtc 138  Q
    ||||||| || |||||||||| | || || ||||||| || |||||||||||||||||||  ||||||||  ||   ||||||| ||||||||| |||||    
T  4466571 gtgtcccagtgtcggacacatcttgtatccgacaccggcacatatagctacactgaattatatgattttcttaa---attattaccggtgtcggagtgtc 4466667  T
Q  139 agtgtccttgttgtgtccgatgtccgt 165  Q
    ||||| | |||  |||||| |||||||    
T  4466668 agtgttcgtgtcatgtccggtgtccgt 4466694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 23657836 - 23657768
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaatta 98  Q
    ||||||||||||||||||| ||||||| ||||| |||| |||||||| || ||||  ||||||||||||    
T  23657836 ggattaggtgtgtcccggtatcggacaaatgtcatgtccgacaccgatatttataattacactgaatta 23657768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 28918103 - 28917965
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtc--tgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagc 124  Q
    ||||||||||| ||||||| || |||||||| |||||||||   ||||||||||  | ||  |||||||||||| ||||||||   ||   |||||||||    
T  28918103 cttggattaggcgtgtcccagtgtcggacacgtgtcgtgtccacgacaccgacacttgtaattacactgaattatgtgattttttcaa---attattagc 28918007  T
Q  125 ggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
      ||||||||||||||| ||| ||| ||||||| ||||||||    
T  28918006 tatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgtg 28917965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 8383322 - 8383221
Alignment:
Q  62 cgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgt 161  Q
    |||||| ||||||||||  ||||  ||||||||||||  ||||||||  |||||||||   ||||||||||||||||| ||||| ||| ||||||  |||    
T  8383322 cgtgtccgacaccgacacttataattacactgaattatatgattttctcaaattatta---gcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgt 8383226  T
Q  162 ccgtg 166  Q
    |||||    
T  8383225 ccgtg 8383221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 24205086 - 24205156
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||| | |||||||||||||||||||| ||| ||||||| |||||||| |||| ||||| ||| ||||    
T  24205086 attattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcatag 24205156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 38731276 - 38731182
Alignment:
Q  69 gacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    |||||||||| ||||| ||||||||||||| ||||||||  |||   |||||||||||| ||| | |||| |||| | ||| ||||||| ||||||||    
T  38731276 gacaccgacacatataactacactgaattatgtgattttttaaa---attattagcggtatcgacatgtcggtgtacatgtcgtgtccgttgtccgtg 38731182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 10335331 - 10335381
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    ||||||||  |||||||||||||||||||| ||| ||||||| ||||||||    
T  10335331 attattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 10335381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 14209231 - 14209173
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    ||||| ||||||||||||||| ||||| | ||| |||| ||||||||| ||||||||||    
T  14209231 gacacttcttggattaggtgtatcccgatgtcgtacacgtgtcgtgtccgacaccgaca 14209173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 3164044 - 3164140
Alignment:
Q  87 tacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||||||||| ||||||||   ||   ||||||||| |||||| |||| || ||||| ||| ||||||| |||||||| |||||||||| ||| ||||    
T  3164044 tacactgaattatgtgattttttcaa---attattagctgtgtcgacgtgccattgtccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcatag 3164140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 11610562 - 11610486
Alignment:
Q  86 ctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||||||| ||||||||   ||   |||||||||||||| ||||||||||| ||  ||||||||| |||||||||    
T  11610562 ctacactgaattatgtgatttttttaa---attattagcggtgttggcgtgtcagtatctgtgttgtgtctgatgtccgt 11610486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 14134794 - 14134707
Alignment:
Q  32 attaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||| |||||| |||  ||||||| |||||||| |||||||||||||||||  |||||||||||| |||||||||  |||||||||    
T  14134794 attaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccgacatatataattacactgaattatgtgattttctcaaattatta 14134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 4786324 - 4786411
Alignment:
Q  54 acacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtc 144  Q
    ||||||||||| || |||||||||| |||||  |||||||||||| |||||||||  ||||||||| |   ||||||||||||||||||||    
T  4786324 acacatgtcgtatccgacaccgacacatataattacactgaattatgtgattttcttaaattattaat---ggtgtcggcgtgtcagtgtc 4786411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 31557096 - 31556962
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcgg 126  Q
    ||||||||||| |||||| ||| |||||||  |||||||||||||||||| |  | ||  |||||||||||| ||||||||  ||    ||||||| | |    
T  31557096 cttggattaggcgtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacactgaattatgtgatttttcaa----attattaactg 31557001  T
Q  127 tgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    |||||||||||||||| || |||  |||||| |||||||    
T  31557000 tgtcggcgtgtcagtgaccatgtcatgtccggtgtccgt 31556962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 22651990 - 22651919
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatagc 187  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| |||| ||| | |||||||| ||| |||||    
T  22651990 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcagtgtccgtatccgtacttcatagc 22651919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 29447542 - 29447504
Alignment:
Q  40 tgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  29447542 tgtcccggtgtcggacacatgtcgtgtctgacaccgaca 29447504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 29510349 - 29510419
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| ||||| || | |||||||| ||| ||||    
T  29510349 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccatgtcagtatccgtgcttcatag 29510419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 25192392 - 25192441
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||| |||||||||||||||||||| | | |||||||||||||||    
T  25192392 attattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgt 25192441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 3951495 - 3951575
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    ||||||||||| |||| || || || ||||| |||||||||||||||||||| |||||  ||||||| |||  ||||||||    
T  3951495 cttggattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacaccgacacatataagtacactgcattttgtgatttt 3951575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 20679366 - 20679446
Alignment:
Q  39 gtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||| |||||||| ||| | ||||||||||||||  ||||  ||||||||| || |||||||||  |||||||||    
T  20679366 gtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacactgaactatgtgattttctcaaattatta 20679446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 22652084 - 22652036
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    |||||||  |||||||||| |||||||||||||||||| ||||||||||    
T  22652084 ggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgaca 22652036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 29510255 - 29510303
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    ||||||||||||||||||| ||||||||  |||||||| ||||||||||    
T  29510255 ggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgaca 29510303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 8293922 - 8293848
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgat 104  Q
    ||||||||||||||| ||| || || |  |||| ||| ||||||||||| |||||  ||||||||||||||||||    
T  8293922 ggattaggtgtgtccaggtgtcagatatgtgtcatgtttgacaccgacacatataattacactgaattacgtgat 8293848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 4673470 - 4673519
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||| | |||||||||||||||||||  ||| |||||||||||||||    
T  4673470 attattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgt 4673519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 29447061 - 29447110
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacat 79  Q
    |||||||| |||||| ||| || ||||||||||||||| |||||||||||    
T  29447061 ggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgacat 29447110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 34897149 - 34897070
Alignment:
Q  63 gtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtcc 145  Q
    ||||| |||| ||||| |||||  |||||||||||| |||||||||  ||   |||||||||||||||| |||||| ||||||    
T  34897149 gtgtccgacatcgacacatataattacactgaattatgtgattttctcaa---attattagcggtgtcgacgtgtctgtgtcc 34897070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 40332288 - 40332200
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatt 118  Q
    |||||||| | |||||||| | |||||| |||||||||  |||||||||  | ||  |||||||||||| |||||||||  ||||||||    
T  40332288 ggattaggcgcgtcccggtgtgggacacgtgtcgtgtcccacaccgacacttgtaattacactgaattatgtgattttctcaaattatt 40332200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 424 - 568
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    ||||||||||||||||||| ||||||||  |||||||| ||||||||||  | ||  |||||||||||  ||||||||   ||   ||||||||| ||||    
T  424 ggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaattttgtgattttttcaa---attattagcagtgt 520  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgt 177  Q
    |||||| ||||||||| ||  |||| || |||||||| | ||||||||    
T  521 cggcgtatcagtgtccgtggcgtgttcggtgtccgtgtccgtatccgt 568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 30502347 - 30502439
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||||  |||||| || |||||||  ||||||||| |||||||||| |||||  |||||||||||| |||||||||  |||||||||    
T  30502347 cttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattatta 30502439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 30542690 - 30542782
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||||  |||||| || |||||||  ||||||||| |||||||||| |||||  |||||||||||| |||||||||  |||||||||    
T  30542690 cttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattatta 30542782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 43564988 - 43564901
Alignment:
Q  20 gacacctcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    ||||| ||| |||||||| |||||||||  |||||||||||||||||| ||||||||||  ||||  |||||| ||||| ||||||||    
T  43564988 gacacttctcggattaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttataattacactaaattatgtgatttt 43564901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 17123144 - 17123012
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||||| |||||||| | |||||||  | |||||||  |||||||||||||||  |  |||  |||| |||||||||  ||   ||||||||||||||    
T  17123144 ggattaggcgtgtcccg-tgtcggacatgtttcgtgtccaacaccgacatatataattgtacttgattatgtgattttctcaa---attattagcggtgt 17123049  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
     ||||||||||||||| |||| |||||||||||||||    
T  17123048 tggcgtgtcagtgtccatgttatgtccgatgtccgtg 17123012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 21191018 - 21191147
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||||| |||||||||  |||||||| ||| ||||| ||||||||||  | ||  |||||||||||| ||||||||   ||   ||||||||| ||||    
T  21191018 ggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaa---attattagctgtgt 21191114  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtc 162  Q
    |||| ||||||||||| ||| ||||||| ||||    
T  21191115 cggcatgtcagtgtccgtgtcgtgtccggtgtc 21191147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 15410493 - 15410540
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtcc 163  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  15410493 attattagcggtgtcggcgtgtcagtgtccgtgtcgtgtctgatgtcc 15410540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 15382491 - 15382421
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||| |||||||||||||| ||||| ||| ||||||| |||||||| | |||||||| ||| ||||    
T  15382491 attattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcatag 15382421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 21137703 - 21137653
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    ||||||| || ||||||||||||||||||| ||||||||||| ||||||||    
T  21137703 attattaccgatgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtg 21137653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 21522764 - 21522694
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| || ||||| | |||||||| ||| ||||    
T  21522764 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtgcttcatag 21522694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 21533330 - 21533260
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| || ||||| | |||||||| ||| ||||    
T  21533330 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtgcttcatag 21533260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 19820439 - 19820488
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||||||||||| |||||||||||| ||| ||||||| |||||||    
T  19820439 attattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgt 19820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 22013428 - 22013379
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| |||||||    
T  22013428 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 22013379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 26312866 - 26312734
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    ||||||||||||||| ||| || ||||| | ||||||| |||||||| | |||||  ||||||||||||  ||||||||  ||   |||||| ||||| |    
T  26312866 ggattaggtgtgtcctggtgtcagacacgtatcgtgtccgacaccgatacatataattacactgaattaattgattttctcaa---attatttgcggtat 26312770  T
Q  130 cggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    |||| | ||||||||| ||| ||||||  |||||||    
T  26312769 cggcatatcagtgtccatgtcgtgtccagtgtccgt 26312734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 3966561 - 3966488
Alignment:
Q  69 gacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtcc 145  Q
    |||||||||| |||||  |||||||||||  |||||||||  |||||||||   ||||||||||| |||||||||||    
T  3966561 gacaccgacacatataattacactgaattgtgtgattttctcaaattatta---gcggtgtcggcatgtcagtgtcc 3966488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 13287400 - 13287505
Alignment:
Q  69 gacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgac 168  Q
    ||||||||||  | ||| |||||||||||| ||||||||   ||||||||||   | |||||| ||||| ||||||| ||| ||||||| |||||||| |    
T  13287400 gacaccgacacttgtagttacactgaattatgtgattttttcaaattattat---ctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgtgtc 13287496  T
Q  169 tgtatccgt 177  Q
     ||||||||    
T  13287497 cgtatccgt 13287505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 28588665 - 28588742
Alignment:
Q  59 tgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtca 139  Q
    ||||||||| ||||||||||  ||||  |||||||||||| |||||||||  ||   ||||||| ||||||||||||||||    
T  28588665 tgtcgtgtccgacaccgacacctataattacactgaattatgtgattttctcaa---attattaccggtgtcggcgtgtca 28588742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 6035497 - 6035464
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgt 149  Q
    ||||||||||||||||||||||||||||| ||||    
T  6035497 attattagcggtgtcggcgtgtcagtgtctttgt 6035464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 39268560 - 39268613
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatat 83  Q
    |||||||| ||||||| || ||||||||||||||||||  ||||||||| ||||    
T  39268560 ggattaggcgtgtcccagtgtcggacacatgtcgtgtccaacaccgacacatat 39268613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 2436936 - 2436908
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtc 144  Q
    |||||||||||||||||||||||||||||    
T  2436936 attattagcggtgtcggcgtgtcagtgtc 2436908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 6401502 - 6401442
Alignment:
Q  126 gtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    ||||||||||||| |||||| ||| | ||||| |||||||| |||||||||| ||| ||||    
T  6401502 gtgtcggcgtgtcggtgtccgtgtcgcgtccggtgtccgtgtctgtatccgtgcttcatag 6401442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 17593725 - 17593773
Alignment:
Q  71 caccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||| |||||||||  ||||||||||||||||||||||  |||||||||    
T  17593725 caccaacatatataattacactgaattacgtgattttctcaaattatta 17593773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 27144477 - 27144449
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtc 144  Q
    |||||||||||||||||||||||||||||    
T  27144477 attattagcggtgtcggcgtgtcagtgtc 27144449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 39698649 - 39698601
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 78  Q
    |||||||| ||||| |||| ||||| |||||||||||| ||||||||||    
T  39698649 ggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgaca 39698601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 8894 - 8753
Alignment:
Q  31 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtc 130  Q
    ||||||| ||||| |||| |||||||| ||||||||| ||||||||||  | ||  |||||| ||| |  |||||||   |||||||||   || |||||    
T  8894 gattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaataatatgattttttcaaattatta---gctgtgtc 8798  T
Q  131 ggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatcc 175  Q
    ||||||||||||||| ||| ||||||| |||||||| | ||||||    
T  8797 ggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatcc 8753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 18276582 - 18276474
Alignment:
Q  66 tctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||||||| | |||  |||||||||||| |||||||||  |||||||||   ||||||||||| | ||||||||  | | ||||||| |||||||    
T  18276582 tctgacaccgacacacataattacactgaattaagtgattttctcaaattatta---gcggtgtcggcatatcagtgtctgtatcgtgtccggtgtccgt 18276486  T
Q  166 gactgtatccgt 177  Q
    | ||||||||||    
T  18276485 gtctgtatccgt 18276474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 18840975 - 18841099
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    ||||||||||||||||||| |||||||  ||||||||||||||||||||  | ||  |||||| ||||| || |||||   ||   ||||||||  ||||    
T  18840975 ggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacacttaattatgtaattttttcaa---attattagttgtgt 18841071  T
Q  130 cggcgtgtcagtgtccttgttgtgtccg 157  Q
    | |||||||||||||| ||| |||||||    
T  18841072 cagcgtgtcagtgtccatgtcgtgtccg 18841099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 5367292 - 5367200
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    ||||||||||| |||||||||  ||||| |  ||||||||| |||||||||| |||||  |||||||||||| ||||||| |  |||||||||    
T  5367292 cttggattaggcgtgtcccggagtcggatatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgatttcctcaaattatta 5367200  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 31808176 - 31808063
Alignment:
Q  28 ttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggt 127  Q
    ||||||||||||||||| ||| ||| |||  ||||||||   |||| |||| |||||  |||||||||||| ||||||||   ||   ||||||||||||    
T  31808176 ttggattaggtgtgtccaggtgtcgaacatgtgtcgtgttcaacactgacacatataattacactgaattatgtgattttgttaa---attattagcggt 31808080  T
Q  128 gtcggcgtgtcagtgtc 144  Q
    ||||| |||||||||||    
T  31808079 gtcggtgtgtcagtgtc 31808063  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 2438681 - 2438758
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    |||||||| |||||||||| |||||||  ||||||||| ||||||||||  | ||  |||||||||||| ||||||||    
T  2438681 ggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 2438758  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 15972970 - 15972858
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    ||||||||||||||||||  |||||||| ||||||||| ||||||||||  | ||  |||||||||||  || |||||   ||||||||| |    ||||    
T  15972970 ggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattgtgtaattttttcaaattattaat---tgtgt 15972874  T
Q  130 cggcgtgtcagtgtcc 145  Q
    ||||||||||||||||    
T  15972873 cggcgtgtcagtgtcc 15972858  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 5040834 - 5040754
Alignment:
Q  27 cttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    |||||| |||| |||||||||  |||||||||||||||||| ||||||||||  | ||  |||| ||||||| ||||||||    
T  5040834 cttggactaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttgtaattacattgaattatgtgatttt 5040754  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 20242712 - 20242811
Alignment:
Q  53 gacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgt 152  Q
    ||||| ||| ||||| |||||||||| |||||  |||||||||||| ||||||||| |||   |  |||||  |||||||||||||||||||| ||| ||    
T  20242712 gacacgtgttgtgtccgacaccgacacatataattacactgaattatgtgattttctaaa---aaaattagttgtgtcggcgtgtcagtgtccatgtcgt 20242808  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 21616802 - 21616737
Alignment:
Q  87 tacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtc 155  Q
    |||||||||||| |||||||||  |||||||||   |||||||||||||||| |||||| ||| |||||    
T  21616802 tacactgaattatgtgattttctcaaattatta---gcggtgtcggcgtgtccgtgtccgtgtcgtgtc 21616737  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 21091816 - 21091696
Alignment:
Q  34 taggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggc 133  Q
    ||||||||||||||| || ||||  || | |||||||||| ||||  | ||  ||||||||| || || ||||||  ||   |||||||||||||||||     
T  21091816 taggtgtgtcccggtgtccgacaggtggcttgtctgacactgacacttgtaattacactgaagtatgttattttcttaa---attattagcggtgtcggt 21091720  T
Q  134 gtgtcagtgtccttgttgtgtccg 157  Q
    |||||||||||| | |||||||||    
T  21091719 gtgtcagtgtccgtcttgtgtccg 21091696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 37559074 - 37558962
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgt 129  Q
    |||||| | |||| ||||| |||||||| ||||  ||| ||||||||||  | ||  |||| ||||||| |||||||| | |||||||||   || ||||    
T  37559074 ggattaagcgtgtaccggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaattatgtgatttttacaaattatta---gctgtgt 37558978  T
Q  130 cggcgtgtcagtgtcc 145  Q
    ||||||||||||||||    
T  37558977 cggcgtgtcagtgtcc 37558962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 23718082 - 23718011
Alignment:
Q  71 caccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtcc 145  Q
    |||||||| |||||  |||||||||||| |||| ||||  |||||||||   |||||||||| ||||||||||||    
T  23718082 caccgacacatataattacactgaattatgtgactttctcaaattatta---gcggtgtcggtgtgtcagtgtcc 23718011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 24105754 - 24105683
Alignment:
Q  71 caccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtcc 145  Q
    |||||||| |||||  |||||||||||| |||| ||||  |||||||||   |||||||||| ||||||||||||    
T  24105754 caccgacacatataattacactgaattatgtgactttctcaaattatta---gcggtgtcggtgtgtcagtgtcc 24105683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 37411210 - 37411313
Alignment:
Q  34 taggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggc 133  Q
    |||| ||||||| || ||||||||  |||||||  |||| ||||| |||||   ||||||||||| |||||||||  ||   ||||||||||||||||||    
T  37411210 taggcgtgtcccagtgtcggacacgcgtcgtgttcgacatcgacacatataatcacactgaattatgtgattttctcaa---attattagcggtgtcggc 37411306  T
Q  134 gtgtcag 140  Q
     ||||||    
T  37411307 atgtcag 37411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 46740 - 46626
Alignment:
Q  69 gacaccgacatatatagctacactgaattacgtgattttcaaaaattattattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgac 168  Q
    ||||||||||| | ||  |||||||||||| ||||||||   |||||||||    | |||||||||||||| ||||| ||| |||||||||||||||| |    
T  46740 gacaccgacatttgtaattacactgaattatgtgattttttcaaattattaa---ctgtgtcggcgtgtcattgtccgtgtcgtgtccgatgtccgtgtc 46644  T
Q  169 tgtatccgttcttgatag 186  Q
     |||||||| ||| ||||    
T  46643 cgtatccgtgcttcatag 46626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 90942 - 90851
Alignment:
Q  28 ttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgattttcaaaaattatta 119  Q
    |||||||||| ||||   ||| |||||||| ||| |||||||||| |||||||||||  ||||||||||||  ||||||||  |||||||||    
T  90942 ttggattaggcgtgttttggtgtcggacacgtgttgtgtctgacatcgacatatataattacactgaattatatgattttctcaaattatta 90851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 241608 - 241558
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtg 166  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| ||||||||    
T  241608 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 241558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 225313 - 225374
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgt 177  Q
    ||||||| | |||||||||||||||||||| ||| ||||||| |||||||| |||| |||||    
T  225313 attattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgt 225374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 9909 - 9842
Alignment:
Q  119 attagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgtgactgtatccgttcttgatag 186  Q
    |||||| ||||||||||||| |||||| ||| ||||||| |||||||| | |||||||| ||| ||||    
T  9909 attagctgtgtcggcgtgtcggtgtccatgtcgtgtccggtgtccgtgtccgtatccgtgcttcatag 9842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 20186 - 20137
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtccttgttgtgtccgatgtccgt 165  Q
    ||||||||| |||||||||||||| ||||| ||| ||||||| |||||||    
T  20186 attattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 20137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 70375 - 70298
Alignment:
Q  30 ggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattacgtgatttt 107  Q
    ||||||||  ||||| ||| |||||||| ||||||||| ||||||||||  ||||  |||||||||||| || |||||    
T  70375 ggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgttatttt 70298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 92821 - 92792
Alignment:
Q  116 attattagcggtgtcggcgtgtcagtgtcc 145  Q
    ||||||||||||||||||||||||||||||    
T  92821 attattagcggtgtcggcgtgtcagtgtcc 92792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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