View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12673_low_9 (Length: 334)
Name: NF12673_low_9
Description: NF12673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12673_low_9 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 138 - 334
Target Start/End: Complemental strand, 27356555 - 27356359
Alignment:
| Q |
138 |
tacttttaagtgtccaaatcttggtatcactagctgggcaaggttaccaatccatgaagctgactttggttggggaagacccatattcatgggacctggt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356555 |
tacttttaagtgtccaaatcttggtatcactagctgggcaaggttaccaatctatgaagctgactttggttggggaagacccatattcatgggacctggt |
27356456 |
T |
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| Q |
238 |
gggattgcatatgaggggttatctttcatcattccaagctcaacaaatgatggtagcttatctttggcaattgctctgcctccagatcagatgaaac |
334 |
Q |
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| T |
27356455 |
gggattgcatatgaggggttatctttcatcattccgagctcaacaaatgatggtagcttatctttggcaattgctctgcctccagatcagatgaaac |
27356359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 138 - 334
Target Start/End: Original strand, 45410608 - 45410804
Alignment:
| Q |
138 |
tacttttaagtgtccaaatcttggtatcactagctgggcaaggttaccaatccatgaagctgactttggttggggaagacccatattcatgggacctggt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410608 |
tacttttaagtgtccaaatcttggtatcactagctgggcaaggttaccaatctatgaagctgactttggttggggaagacccatattcatgggacctggt |
45410707 |
T |
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| Q |
238 |
gggattgcatatgaggggttatctttcatcattccaagctcaacaaatgatggtagcttatctttggcaattgctctgcctccagatcagatgaaac |
334 |
Q |
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| T |
45410708 |
gggattgcatatgaggggttatctttcatcattccgagctcaacaaatgatggtagcttatctttggcaattggtctgcctccagatcagatgaaac |
45410804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 27356861 - 27356738
Alignment:
| Q |
20 |
ggcaggtcatgtatggagaagtgtaagcaaggcaagagcacttcctgttgatcaagaaacaaaattgtacattgcaactgatggaagatcaaggcttcaa |
119 |
Q |
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| T |
27356861 |
ggcaggtcatgtatggagaagtgtaagcaaggcaagagcacttcctgttgatcaagaaacaaaattgtacattgcaactgatggaagatcaaggcttcaa |
27356762 |
T |
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| Q |
120 |
ccttcacttccacaaggctacttt |
143 |
Q |
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| T |
27356761 |
ccttcacttccacaaggttacttt |
27356738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 45410302 - 45410425
Alignment:
| Q |
20 |
ggcaggtcatgtatggagaagtgtaagcaaggcaagagcacttcctgttgatcaagaaacaaaattgtacattgcaactgatggaagatcaaggcttcaa |
119 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410302 |
ggcaggtcatgtatggagaagtgtaagcaaggctagagcacttcctgttgatcaagaaacaaaattgtacattgcaactgatggaagatcaaggcttcaa |
45410401 |
T |
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| Q |
120 |
ccttcacttccacaaggctacttt |
143 |
Q |
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| T |
45410402 |
ccttcacttccacaaggttacttt |
45410425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 138 - 314
Target Start/End: Original strand, 1130581 - 1130757
Alignment:
| Q |
138 |
tacttttaagtgtccaaatcttggtatcactagctgggcaaggttaccaatccatgaagctgactttggttggggaagacccatattcatgggacctggt |
237 |
Q |
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|||||| |||||||| ||||||||||| ||||| ||||| ||| | || || ||||| ||||| |||||||||||||| || || ||||||||||||||| |
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| T |
1130581 |
tactttcaagtgtccgaatcttggtattactagttgggctaggcttccgatacatgatgctgattttggttggggaaggcctattttcatgggacctggt |
1130680 |
T |
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| Q |
238 |
gggattgcatatgaggggttatctttcatcattccaagctcaacaaatgatggtagcttatctttggcaattgctct |
314 |
Q |
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| T |
1130681 |
gggattgcttatgaagggctttctttcataattccaagctcagcaaatgatggaagtttatctgtggcaattgctct |
1130757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 1130282 - 1130359
Alignment:
| Q |
27 |
catgtatggagaagtgtaagcaaggcaagagcacttcctgttgatcaagaaacaaaattgtacattgcaactgatgga |
104 |
Q |
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||||| ||||||||||| |||| |||||| || | |||| |||||||||||| |||||||| |||||||| |||||| |
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| T |
1130282 |
catgtttggagaagtgtctgcaaagcaagatcattacctgatgatcaagaaaccaaattgtatattgcaaccgatgga |
1130359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 1109867 - 1109912
Alignment:
| Q |
269 |
ttccaagctcaacaaatgatggtagcttatctttggcaattgctct |
314 |
Q |
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| T |
1109867 |
ttccaagctcaacaaatgatgggagtttatcagtggcaattgctct |
1109912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 31965285 - 31965192
Alignment:
| Q |
143 |
ttaagtgtccaaatcttggtatcactagctgggcaaggttaccaatccatgaagctgactttggttggggaagacccatattcatgggacctgg |
236 |
Q |
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| T |
31965285 |
ttaagtgtccaaatcttgcgatcattagttgggcaaagtttccaatctatgatgctgattttggttggggaaggccaattttcatgggacctgg |
31965192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 31965589 - 31965482
Alignment:
| Q |
24 |
ggtcatgtatggagaagtgtaagcaaggcaagagcacttcctgttgatcaagaaacaaaattgtacattgcaactgatggaagatcaaggcttcaacctt |
123 |
Q |
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|||||||| ||||||||||| ||| |||||| ||||||| |||||||||||| |||||||| || |||| ||||||||||||||| | |||||| |
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| T |
31965589 |
ggtcatgtttggagaagtgtctgcatagcaagatcacttcccaatgatcaagaaaccaaattgtatatcccaacagatggaagatcaaggttgcaacctc |
31965490 |
T |
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| Q |
124 |
cacttcca |
131 |
Q |
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|||||||| |
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| T |
31965489 |
cacttcca |
31965482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 31965170 - 31965117
Alignment:
| Q |
261 |
tttcatcattccaagctcaacaaatgatggtagcttatctttggcaattgctct |
314 |
Q |
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|||||| ||||||||||||||||||||||| || |||||| ||| |||| |||| |
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| T |
31965170 |
tttcataattccaagctcaacaaatgatgggagtttatctgtggtaatttctct |
31965117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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