View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12674_high_2 (Length: 407)
Name: NF12674_high_2
Description: NF12674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12674_high_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 32 - 407
Target Start/End: Original strand, 42563227 - 42563615
Alignment:
| Q |
32 |
gtgttcttcaattttgttcaataacaaaaggagctatgcaaaaaattaattccacttgaagatgaatacataccaagaaatatgcactatagtaagagcc |
131 |
Q |
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| T |
42563227 |
gtgttgttcaattttgttcaataacaaaaggagctatgcaaaaaattaattccacttgaagatgaatacataccaagaaatatgcactatagtaagagcc |
42563326 |
T |
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| Q |
132 |
ttgtttttcatcgtcacttagattttccacattcagaatcaaaagtgatcatagaaatcatcaactg-------------ttacatataatacacaatac |
218 |
Q |
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| T |
42563327 |
ttgtttttcatcgtcacttagattttccacattcagaatcaaaagtgatcatagaaatcatcaactgatagcatatactgttacatataatacacaatac |
42563426 |
T |
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| Q |
219 |
ctcaatacatggcttcatagttaaaatgaattggaagttgcaaaacattgatctgatataaatgcaccttttcttcaaactttcactcaatttgagataa |
318 |
Q |
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| T |
42563427 |
ctcaatacatggcttcatagttaaaatgaattggaagttgcaaaacattgatctgatataaatgcaccttttcttcaaactttcactcaatttgagataa |
42563526 |
T |
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| Q |
319 |
tgacatcgacgaagaatggttagtaaaccaatatcagtaagcttgtatccattgatatcaagatggcacagaccagacatcatttcagc |
407 |
Q |
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| T |
42563527 |
tgacatcgacgaagaatggttagtaaaccaatatcagtaagcttgtgtccattgatatcaagatggcacagaccagacatcatttcagc |
42563615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 325
Target Start/End: Complemental strand, 15936316 - 15936270
Alignment:
| Q |
279 |
aatgcaccttttcttcaaactttcactcaatttgagataatgacatc |
325 |
Q |
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| T |
15936316 |
aatgcaccttttttccaaactttcactcaattcgagataacgacatc |
15936270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 36309079 - 36309154
Alignment:
| Q |
254 |
agttgcaaaacattgatctgatataaatgcaccttttcttcaaactttcactcaatttgagataatgacatcgacgaa |
331 |
Q |
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| T |
36309079 |
agttgcaaatcattgatctgatc--aatgcaccttttcttcaaactttcactcaattcaagataatgtcatcgacgaa |
36309154 |
T |
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