View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12675_high_1 (Length: 281)
Name: NF12675_high_1
Description: NF12675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12675_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 15152830 - 15153089
Alignment:
| Q |
9 |
agcagagatgacaaagaggtatatttccatcggaggtgactttctcgaagcctagtcggagttctatacacttagaaaaggatgtcggaaacaaagatgt |
108 |
Q |
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| T |
15152830 |
agcagagatgacaaagaggtatatttccgtcggaggcgactttctcgaagcccagtcggagttctatacacttagaaaaggatgtcggaaacaaagatgt |
15152929 |
T |
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| Q |
109 |
cgaggaaatggccaatggcctattttcaataccattaataaagaggataaatgttcattttttgtgtagcctattttcaatatacctaaactaccctccc |
208 |
Q |
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| T |
15152930 |
cgaggaaatggccaatggcctattttcaataccattaataaagaggataaatgttcattttttgtgtagcctattttcaatatacctaaattaccctccc |
15153029 |
T |
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| Q |
209 |
ataacgattaaattatttttcaaatttaaatgttcatctacaccataactggaacttagt |
268 |
Q |
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| T |
15153030 |
ataacaattaaattatttttcaaatttaaattttcatctacactataactggaacttagt |
15153089 |
T |
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