View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12675_high_5 (Length: 219)
Name: NF12675_high_5
Description: NF12675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12675_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 36147125 - 36146940
Alignment:
| Q |
18 |
tgccaataataatgtgattttatgtacatatatattataatcataatatattacggatagtaaaacttaagacttgcatacacatataatagtagtatat |
117 |
Q |
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| T |
36147125 |
tgccaataataatgtgattttatgtacatatatattataatcataatatattacggatagtaaaacttaagacttgcatacacatataatagtagtatat |
36147026 |
T |
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| Q |
118 |
aataatatgacattttctcctgatattttcattatgtatgcagaaatgtagaaatattgcattttctcttatatttattttatttt |
203 |
Q |
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| T |
36147025 |
aataatatgacattttctcctgatattttcattatgtatgcagaaatgtagaaatattgcattttctcttatatttattttatttt |
36146940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 36079916 - 36079865
Alignment:
| Q |
47 |
atatattataatcataatatattacggatagtaaaacttaagacttgcatac |
98 |
Q |
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| T |
36079916 |
atatattataatcataatatatgacaaatagtaaaacttaagacttgcatac |
36079865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 36075708 - 36075673
Alignment:
| Q |
117 |
taataatatgacattttctcctgatattttcattat |
152 |
Q |
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| T |
36075708 |
taataatatgacattttctcctgatattttcattat |
36075673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 26529972 - 26530044
Alignment:
| Q |
121 |
aatatgacattttctcctgatattttcattatgtatgcagaaatgtagaaatattgcattttctcttatatttattttatt |
201 |
Q |
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| T |
26529972 |
aatatgacattttctcctgatattttcattatgtatgc--------agaaatattgcattttctcttatatttattttatt |
26530044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 26529831 - 26529875
Alignment:
| Q |
22 |
aataataatgtgattttatgtacatatatattataatcataatatat |
68 |
Q |
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| T |
26529831 |
aataataatgtgattttatgtac--atatattttaatcataatatat |
26529875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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