View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12675_low_1 (Length: 297)
Name: NF12675_low_1
Description: NF12675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12675_low_1 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0713 (1 HSPs) |
| | |
|
| [»] scaffold0002 (4 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0654 (2 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 14654849 - 14655122
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
14654849 |
agtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccggtcacgatt |
14654948 |
T |
|
| Q |
101 |
ttgaatttt-gggtcgtgacaa-gttggtatcagagctcggttgtaggtcctaatagctgcagacatagaatgaaaatagattcttgctagtaaattgtg |
198 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14654949 |
gtgaatttttgggtcgtgacaaagttggtatcagagctcggttgtaggtcctaatagctgcagacatagaacgaaaatagattcttgctagtaaattgtg |
14655048 |
T |
|
| Q |
199 |
aaccgcggcaccatttactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattat |
272 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14655049 |
aaccgcggcaccatttacttgcaaaaatctatttggattctatggtagtgtcatttgttgtccaatcttattat |
14655122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 16101324 - 16101597
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
16101324 |
agtgaaagtcaacttgaaaattgtttaaattatagtttgtcaagtgtagtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgata |
16101423 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgacaa-gttggtatcagagctc-ggttgtaggtcctaatagctgcagacatagaatgaaaatagattcttgctagtaaattgtg |
198 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16101424 |
ttgaattttgggtcgtgacaaagttggtatcagagctctggttgtaggtcctactagctgcagacatagaatgaaaatagattcttgttagtaaattgtg |
16101523 |
T |
|
| Q |
199 |
aaccgcggcaccatttactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattat |
272 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
16101524 |
aactgcggcaccatttacttgcaaaaatctatttgcatcctatggtagtgtcatttgttgtccaatcttgttat |
16101597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 16104780 - 16104900
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
16104780 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtagtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgata |
16104879 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgacaa |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
16104880 |
ttgaattttgggtcgtgacaa |
16104900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 19657008 - 19656889
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
19657008 |
agtgaaagtaaatttgaaaattgtttaaattatagtttgtcaaggattgtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgata |
19656909 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgaca |
120 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
19656908 |
ttgaatcttgggtcgtgaca |
19656889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 14650849 - 14650969
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
14650849 |
agtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccggtcacgatt |
14650948 |
T |
|
| Q |
101 |
ttgaa-ttttgggtcgtgaca |
120 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
14650949 |
gtgaatttttgggtcgtgaca |
14650969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 14660640 - 14660760
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
14660640 |
agtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccggtcacgatt |
14660739 |
T |
|
| Q |
101 |
ttgaa-ttttgggtcgtgaca |
120 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
14660740 |
gtgaatttttgggtcgtgaca |
14660760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 17478334 - 17478215
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
17478334 |
agtgaaagtcaatttggaaaatgtttgaattatagtttgtcaagtgttgtcaattggcttgccgaactaggatgttctagttcgtgcgccggtcacgatt |
17478235 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgaca |
120 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
17478234 |
gtgaattttgggtcgtgaca |
17478215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 29287817 - 29287704
Alignment:
| Q |
6 |
aagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaa |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
29287817 |
aagtcaaattgaaaattgtttaaattatagtt-gtcaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgatcgtgaa |
29287719 |
T |
|
| Q |
106 |
ttttgggtcgtgaca |
120 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29287718 |
ttttgggtcgtgaca |
29287704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 17652875 - 17652807
Alignment:
| Q |
52 |
aataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca |
120 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
17652875 |
aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca |
17652807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 47050130 - 47050059
Alignment:
| Q |
49 |
gtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca |
120 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||| ||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
47050130 |
gtcaatatgcttgtcggactaggatgttctagtttgtgcgccagtcacggttgtgaattttgggtcgtgaca |
47050059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 5519083 - 5518822
Alignment:
| Q |
12 |
atttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgg |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
5519083 |
atttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactatgatgttctagttcgtgcgccggtcacgattgtgaattttgg |
5518984 |
T |
|
| Q |
112 |
gtcgtgacaa-gttggtatcagagctcggttgtaggtcctaatagctgcagacatagaatgaaaatagattcttgctagtaaattgtgaaccgcggcacc |
210 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5518983 |
gtcgtgacaaagttggtatcagagcccggttgtaggtcctaataactgcagacatagaattaaaatagattcttgctagtaaattgtgaaccgcggcacc |
5518884 |
T |
|
| Q |
211 |
atttactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatcttattat |
272 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
5518883 |
atttacttgcaagaatctatttgcattctatggtagtgttatttgttgtccaatcttattat |
5518822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 38978534 - 38978649
Alignment:
| Q |
157 |
tgcagacatagaatgaaaatagattcttgctagtaaattgtgaaccgcggcaccatttactttc-aaaaatctatttgcattctatggtagtgtcatttg |
255 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38978534 |
tgcagacacagagtgaaaatagattcttgctagtaaattgtgagccgcggcaccatttacttgcaaaaaatctacttgcattctatggtagtgtcatttg |
38978633 |
T |
|
| Q |
256 |
ttgtccgatcttatta |
271 |
Q |
| |
|
|||| | ||||||||| |
|
|
| T |
38978634 |
ttgttcaatcttatta |
38978649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 42786077 - 42786185
Alignment:
| Q |
12 |
atttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgg |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||||| |
|
|
| T |
42786077 |
atttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattataaattttgg |
42786176 |
T |
|
| Q |
112 |
gtcgtgaca |
120 |
Q |
| |
|
||||||||| |
|
|
| T |
42786177 |
gtcgtgaca |
42786185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 27197900 - 27197779
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||||||||||| |||||| |||| |||||||||||||||| ||||||| ||| ||||||| ||||||||| ||||||||||| |||| |||||| |
|
|
| T |
27197900 |
agtgaaagtcaatttaaaaattatttatattatagtttgtcaagtgttgtcattagacttgccgaactaggatgttctagttcgtgcgccgatcacgatt |
27197801 |
T |
|
| Q |
101 |
ttgaa-ttttgggtcgtgacaa |
121 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
27197800 |
gtgaatttttgggtcgtgacaa |
27197779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 15599417 - 15599535
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||| |||| ||| |||| || |||||| | | ||||||| || |||||||||||||||| ||||||||| ||||||||||| | | ||||||| |
|
|
| T |
15599417 |
agtgaaattcaaattggaaatagtctaaatttttgcgtgtcaagtgtcgtcaataggcttgccgaactaggatgttctagttcgtgcgtccgtcacgatt |
15599516 |
T |
|
| Q |
101 |
ttga-attttgggtcgtga |
118 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
15599517 |
ttgagtttttgggtcgtga |
15599535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 7688541 - 7688409
Alignment:
| Q |
4 |
gaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7688541 |
gaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgaaattg |
7688442 |
T |
|
| Q |
104 |
aattttgggtcgtgac-aagttggtatcagagc |
135 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |
|
|
| T |
7688441 |
aattttaggtcgtgacaaagttggtatcagagc |
7688409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 5705184 - 5705065
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| | ||||||||||| | |
|
|
| T |
5705184 |
agtgaaagtcagtttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggcttgccggactaggatgtcttagttcgagcgccggtcacgata |
5705085 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgaca |
120 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5705084 |
ttgaattttgggtcgtgaca |
5705065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 28104394 - 28104514
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
28104394 |
agtgaaagtcaatttgaaatttatctaaattatagtttgtcaagtgtcgtcattaggcttgccggactaggatgttctagttcatgcgccggtcacgaat |
28104493 |
T |
|
| Q |
101 |
ttgaa-ttttgggtcgtgaca |
120 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
28104494 |
gtgaatttttgggtcgtgaca |
28104514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 28058129 - 28058009
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||||| ||||||||| || | |||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
28058129 |
agtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttattaggcttgccggactaggatgttctagttcgtgcgccggtcacaaat |
28058030 |
T |
|
| Q |
101 |
ttgaa-ttttgggtcgtgaca |
120 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
28058029 |
gtgaatttttgggtcgtgaca |
28058009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 28068554 - 28068434
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||||| ||||||||| || | |||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
28068554 |
agtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttattaggcttgccggactaggatgttctagttcgtgcgccggtcacaaat |
28068455 |
T |
|
| Q |
101 |
ttgaa-ttttgggtcgtgaca |
120 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
28068454 |
gtgaatttttgggtcgtgaca |
28068434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 19435605 - 19435710
Alignment:
| Q |
14 |
ttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggt |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||||||| |||| |||| ||| ||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
19435605 |
ttgaaaattgtttaaattatagtt-gtcaagtgtcgtcaatagacttgtcggattagaatgttctagttcgtgcgccggtcacgattgtgaattttgggt |
19435703 |
T |
|
| Q |
114 |
cgtgaca |
120 |
Q |
| |
|
||||||| |
|
|
| T |
19435704 |
cgtgaca |
19435710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 17954336 - 17954288
Alignment:
| Q |
50 |
tcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga |
98 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||||||||| |||| |
|
|
| T |
17954336 |
tcaataggcttgccgggttagaatgttctagttcgtgtgccggttacga |
17954288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 10416522 - 10416641
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
10416522 |
agtgaaagtcaatttgaaaattgtttaaattgtagtttgtcaagtgtcgtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgata |
10416621 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgaca |
120 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10416622 |
ttgaattttgggtcgtgaca |
10416641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 4698478 - 4698597
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
4698478 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgttaatagacttgccggactaggatgttctagttcatgcgccggtcacgaaa |
4698577 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgaca |
120 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4698578 |
ttgaattttgggtcgtgaca |
4698597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 9310639 - 9310540
Alignment:
| Q |
108 |
ttgggtcgtgacaa-gttggtatcagagctcggttgtaggtcctaatagctgcagacatagaatgaaaatagattcttgctagtaaattgtgaaccgcgg |
206 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9310639 |
ttgggtcgtgacaaagttgatatcagagcccggttgtaggtcctaatagctgcagacat-gaatgaaaatagattcttgctagtaaattgtgaaccgcgg |
9310541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 808285 - 808176
Alignment:
| Q |
12 |
atttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgg |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
808285 |
atttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattgtgaattttgg |
808186 |
T |
|
| Q |
112 |
gtcgtgacaa |
121 |
Q |
| |
|
|||||||||| |
|
|
| T |
808185 |
gtcgtgacaa |
808176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 2588428 - 2588533
Alignment:
| Q |
14 |
ttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggt |
113 |
Q |
| |
|
|||||||||||||||| ||||||| | |||| || |||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
2588428 |
ttgaaaattgtttaaactatagtt-gccaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccgttcacgattgtgaattttgggt |
2588526 |
T |
|
| Q |
114 |
cgtgaca |
120 |
Q |
| |
|
||||||| |
|
|
| T |
2588527 |
cgtgaca |
2588533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 44324742 - 44324810
Alignment:
| Q |
52 |
aataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca |
120 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
44324742 |
aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca |
44324810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 9306115 - 9306051
Alignment:
| Q |
203 |
gcggcaccatttactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccgatctt |
267 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| ||| |||||| ||||||||| ||||| |
|
|
| T |
9306115 |
gcggcaccatttacttgcaaaaatctattagcattctacggttgtgtcacttgttgtccaatctt |
9306051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 45333308 - 45333356
Alignment:
| Q |
50 |
tcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga |
98 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||| ||||||||||| |
|
|
| T |
45333308 |
tcaataggcttgccgggctagaatgttctagttcgtgcgccggtcacga |
45333356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 108 - 263
Target Start/End: Original strand, 27684718 - 27684874
Alignment:
| Q |
108 |
ttgggtcgtgacaa-gttggtatcagagctcggttgtaggtcctaatagctgcagacatagaatgaaaatagattcttgctagtaaattgtgaaccgcgg |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
27684718 |
ttgggtcgtgacaaagttggtatcagagcccggttttaggtccaaatagctgcagacatagagtgataatagatttttgctagtaaattgtgaaccgcgg |
27684817 |
T |
|
| Q |
207 |
caccatttactttcaaaaatctatttgcattctatggtagtgtcatttgttgtccga |
263 |
Q |
| |
|
||||||||||| |||||| ||||| | | ||||||||||| ||||||||||||||| |
|
|
| T |
27684818 |
caccatttactcgcaaaaagctattagaactctatggtagtctcatttgttgtccga |
27684874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 33063691 - 33063811
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |||||||| || | |
|
|
| T |
33063691 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactagggtgctctagttcgtacgccggtcatgata |
33063790 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgacaa |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
33063791 |
ttgaattttgggtcgtgacaa |
33063811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 30130918 - 30131025
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
30130918 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggctttccggactaggaagctctagttcgtgcgccgatcacgaaa |
30131017 |
T |
|
| Q |
101 |
ttgaattt |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
30131018 |
ttgaattt |
30131025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 27527826 - 27527946
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
27527826 |
agtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgtcggtcacgatt |
27527925 |
T |
|
| Q |
101 |
ttgaa-ttttgggtcgtgaca |
120 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
27527926 |
gtgaatttttgggtcgtgaca |
27527946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 33056212 - 33056334
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtc---aataggcttgccggactaggatgctctagttcgtgtgccggtcacg |
97 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| || ||| ||||||||| |||||||||| | |||||||||||| |||||||||| |
|
|
| T |
33056212 |
agtgaaagtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttaccggactagggtactctagttcgtgcgccggtcacg |
33056311 |
T |
|
| Q |
98 |
aaattgaattttgggtcgtgaca |
120 |
Q |
| |
|
| ||||||||||||||| ||||| |
|
|
| T |
33056312 |
atattgaattttgggtcttgaca |
33056334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 15970066 - 15969961
Alignment:
| Q |
6 |
aagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaa |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||| ||| |||||||| ||| |||| |||| |||||| ||||||||||| |||| |
|
|
| T |
15970066 |
aagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcattagacttgccgggctacgatgttctatttcgtgcgccggtcacgattgtgaa |
15969967 |
T |
|
| Q |
106 |
ttttgg |
111 |
Q |
| |
|
|||||| |
|
|
| T |
15969966 |
ttttgg |
15969961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 28041304 - 28041408
Alignment:
| Q |
15 |
tgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtc |
114 |
Q |
| |
|
||||||||||||||||||||||| | |||| || ||||||| |||| ||| ||||||||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
28041304 |
tgaaaattgtttaaattatagtt-gccaagtgtcgtcaataagcttaccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggtc |
28041402 |
T |
|
| Q |
115 |
gtgaca |
120 |
Q |
| |
|
|||||| |
|
|
| T |
28041403 |
gtgaca |
28041408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 22014634 - 22014702
Alignment:
| Q |
52 |
aataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca |
120 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
22014634 |
aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca |
22014702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 6952787 - 6952903
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| |||| || ||||||| ||||| | |||||| || ||||||| ||| ||||||| || |
|
|
| T |
6952787 |
agtgaaagttaatttaaaaattgtttaaattatagtttgccaagtgtcgtcaataagcttgtcatactaggttgttctagtttgtgcaccggtcaggatt |
6952886 |
T |
|
| Q |
101 |
ttgaattttgggtcgtg |
117 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
6952887 |
ttaaattttgggtcgtg |
6952903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 25477735 - 25477662
Alignment:
| Q |
49 |
gtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgacaagt |
123 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||| |||| |||| ||||||||||||||||| |
|
|
| T |
25477735 |
gtcaataggcttgccggactaggatgttctagttcgtgcgccggttacgattgtgaa-tttgggtcgtgacaagt |
25477662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 16692888 - 16692837
Alignment:
| Q |
174 |
aatagattcttgctagtaaattgtgaaccgcggcaccatttactttcaaaaa |
225 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
16692888 |
aatagatttttgctagtaaattgtgaaccacggcaccgtttactttcaaaaa |
16692837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 14011684 - 14011732
Alignment:
| Q |
50 |
tcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga |
98 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||| |||| |||||| |
|
|
| T |
14011684 |
tcaataggcttgccgggctagaatgttctagttcgtgcgccgatcacga |
14011732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 76660 - 76807
Alignment:
| Q |
103 |
gaattttgggtcgtgacaa-gttggtatcagagctcggttgtaggtcctaatagctgcagacatagaatgaaaatagattcttgctagtaaattgtgaac |
201 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
76660 |
gaattttgaatcgtgacaaagttggtatcagagcatggtagtaggtcctaataggtgcagacatagaatgaaaatagattcttgctagtaaattgtgaac |
76759 |
T |
|
| Q |
202 |
cgcggcaccatttactttcaaaaatctatttgcattctatggtagtgt |
249 |
Q |
| |
|
|||| |||||||||||| | |||||||||| ||||| | ||||||||| |
|
|
| T |
76760 |
cgcgacaccatttacttgcgaaaatctattagcattatgtggtagtgt |
76807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 28804135 - 28804256
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
28804135 |
agtgaaaaacaatttaaaaattgtttaaattatagtttgtcaagtgtcatcaatagacttgccggactaggatgctctagttcgtgcgccggtcacgata |
28804234 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgacaag |
122 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
28804235 |
ttaaattttgggtcgtgacaag |
28804256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 26525373 - 26525503
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
|||| ||||||| ||||||| | || |||||||||||||||||| || |||||||| |||| ||| |||| | | ||||||||||| ||||||||||| | |
|
|
| T |
26525373 |
agtggaagtcaaattgaaaaattttcaaattatagtttgtcaagtgtcgtcaatagacttgtcgggctagaaagttctagttcgtgcgccggtcacgata |
26525472 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgac-aagttggtatc |
130 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| |
|
|
| T |
26525473 |
ttgaatttttggtcgtgacaaagttggtatc |
26525503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 36263778 - 36263730
Alignment:
| Q |
50 |
tcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga |
98 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||||| ||||||||||| |
|
|
| T |
36263778 |
tcaataggcttgccgggctaaaatgttctagttcgtgcgccggtcacga |
36263730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 5358221 - 5358101
Alignment:
| Q |
3 |
tgaaagtcaa-tttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaat |
101 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| | |
|
|
| T |
5358221 |
tgaaagtcaaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattt |
5358122 |
T |
|
| Q |
102 |
tgaattttgggtcgtgacaag |
122 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
5358121 |
tagattttgggtcgtgacaag |
5358101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 30874009 - 30873893
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| ||| ||||||||||| |
|
|
| T |
30874009 |
agtgaaggtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactaagatgttctagtttgtgcgccggtcacgatt |
30873910 |
T |
|
| Q |
101 |
ttgaattttgggtcgtg |
117 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
30873909 |
ttgaattttgggccgtg |
30873893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 27560733 - 27560628
Alignment:
| Q |
14 |
ttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggt |
113 |
Q |
| |
|
|||||||||||||||||||||||| | |||| || |||||||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
27560733 |
ttgaaaattgtttaaattatagtt-gccaagtgtcgtcaataggcttgccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggt |
27560635 |
T |
|
| Q |
114 |
cgtgaca |
120 |
Q |
| |
|
| ||||| |
|
|
| T |
27560634 |
cctgaca |
27560628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 51534234 - 51534327
Alignment:
| Q |
26 |
taaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca |
120 |
Q |
| |
|
|||||||||||| |||||| || |||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
51534234 |
taaattatagtt-gtcaagtgtggtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca |
51534327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 18693823 - 18693730
Alignment:
| Q |
26 |
taaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgaca |
120 |
Q |
| |
|
|||||||||||| |||| | || |||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
18693823 |
taaattatagtt-gtcatgtgtcgtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca |
18693730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 28602722 - 28602613
Alignment:
| Q |
12 |
atttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||| |
|
|
| T |
28602722 |
atttgaaaattgtttaaattatagtttgtcaagtgtcgttaataggcttgccggactaggatgttctaattcgtgcgccggtcacgattgtgaattttgg |
28602623 |
T |
|
| Q |
112 |
gtcgtgacaa |
121 |
Q |
| |
|
|||||||||| |
|
|
| T |
28602622 |
gtcgtgacaa |
28602613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 15925525 - 15925635
Alignment:
| Q |
10 |
caatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaatttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| | |||||||||||| ||||||||||||||||| || ||| ||||||||||| ||| |||||| |
|
|
| T |
15925525 |
caatttgaaaattgtttaaattataggttatcaagtgccatcaataggcttgacggactaggatgctctaatttgtgcgccggtcacgatattaaatttt |
15925624 |
T |
|
| Q |
110 |
gggtcgtgaca |
120 |
Q |
| |
|
||||||||||| |
|
|
| T |
15925625 |
gggtcgtgaca |
15925635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 4706259 - 4706151
Alignment:
| Q |
12 |
atttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgg |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
4706259 |
atttaaaaattgtttaaattatagtttgttaagtgtcgtcaacgggcttgccggactaggatgttctagtttgtgcgccggtcacgattgtgaattttgg |
4706160 |
T |
|
| Q |
112 |
gtcgtgaca |
120 |
Q |
| |
|
||||||||| |
|
|
| T |
4706159 |
gtcgtgaca |
4706151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 18983071 - 18983119
Alignment:
| Q |
50 |
tcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga |
98 |
Q |
| |
|
||||||||||||||| |||| ||| ||||||||||| ||||||||||| |
|
|
| T |
18983071 |
tcaataggcttgccgagctagaatgttctagttcgtgcgccggtcacga |
18983119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 1291 - 1388
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga |
98 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
1291 |
agtgtaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggctttccggactaggatgttctagttcgtgcgccggtcacga |
1388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 10306 - 10399
Alignment:
| Q |
28 |
aattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgacaa |
121 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
10306 |
aattatagtttgtcaagtgtcatcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgatattaaattttgggtcgtgacaa |
10399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 406572 - 406455
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||| | ||||||||| || | ||| |||||| ||||||||||| |||| |||||| |
|
|
| T |
406572 |
agtgaaagtcaatttaaaaattatttaaattatagtttgtcaagtttcgtcaataggttttactgacaaggatgttctagttcgtgcgccgatcacgatt |
406473 |
T |
|
| Q |
101 |
ttgaattttgggtcgtga |
118 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
406472 |
ttgaattttgggtcgtga |
406455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 412572 - 412530
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaa |
43 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||| |||| |
|
|
| T |
412572 |
agtgaaagtcaatttaaaaattatttaaattatagtttctcaa |
412530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 423943 - 423827
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||| ||||||| ||||||||||||| |||||||||||||| | |||||||| || |||||||| ||| | ||||| ||| ||| |||| | |
|
|
| T |
423943 |
agtgaaaatcaatttaaaaattgtttaaa-tatagtttgtcaagtttcgtcaatagatttttcggactagaatgttttagtttgtgcaccgatcacaatt |
423845 |
T |
|
| Q |
101 |
ttgaattttgggtcgtga |
118 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
423844 |
gtgaattttgggtcgtga |
423827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 115382 - 115262
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||| || |||||||| |||||| || |||||| ||||||||||| |||| ||| || |
|
|
| T |
115382 |
agtgaaaatcaatttgaaaattgtttaaattatagtgtgtcaagtgtcgtcaatagacttgcctgattaggatattctagttcgtgcgccgatcatgatt |
115283 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgacaa |
121 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
115282 |
gtgaattttgggtcgtgacaa |
115262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 233173 - 233054
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
|||||||||||| ||| |||| || | |||| || ||||||||| ||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
233173 |
agtgaaagtcaaattggaaatagtctgaattttaatttgtcaagtgttgtcaatagacttgccgaactaggatgttctagttcgtgcgccggtcacgatt |
233074 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgaca |
120 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
233073 |
gtgaattttgggtcgtgaca |
233054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 4077 - 3957
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaa |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| || |||| || || ||||| |||||| |||||||||| ||||||||||| |||| |||| | |
|
|
| T |
4077 |
agtgaaaatcaatttaaaaattgtttaaattatagtgtgccaagtgtcgttaatagacttgcctgactaggatgttctagttcgtgcgccgatcactatt |
3978 |
T |
|
| Q |
101 |
ttgaattttgggtcgtgacaa |
121 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3977 |
gtgaattttgggtcgtgacaa |
3957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 5431 - 5309
Alignment:
| Q |
1 |
agtgaaagtcaatttgaaaattgtttaaattata--gtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacga |
98 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| || ||||||| || |||||||| |||||| |||||||||| ||||||||||| |||| |||| | |
|
|
| T |
5431 |
agtgaaaatcaatttaaaaattgtttaaattatatagtgtgtcaagtgtcgtcaatagacttgcctgactaggatgttctagttcgtgcgccgatcacta |
5332 |
T |
|
| Q |
99 |
aattgaattttgggtcgtgacaa |
121 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5331 |
ttgtgaattttgggtcgtgacaa |
5309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 4129 - 4228
Alignment:
| Q |
20 |
attgtttaaattatagtttgtcaagggttgtcaataggcttgccggactaggatgctctagttcgtgtgccggtcacgaaattgaattttgggtcgtgac |
119 |
Q |
| |
|
|||||||||||||||||| | |||| || |||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
4129 |
attgtttaaattatagtt-gccaagtgtcgtcaataggcttgctggactaggatgttctagttcgtgcgccggtcacgattgtgaa-tttgggtcgtgac |
4226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 61210 - 61256
Alignment:
| Q |
52 |
aataggcttgccggactaggatgctctagttcgtgtgccggtcacga |
98 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||| ||||||||||| |
|
|
| T |
61210 |
aataggcttgccgggctagaatgatctagttcgtgcgccggtcacga |
61256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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