View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12675_low_7 (Length: 206)
Name: NF12675_low_7
Description: NF12675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12675_low_7 |
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| [»] scaffold0098 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 38359101 - 38359277
Alignment:
| Q |
16 |
attaccatctattcttggacagttaaacttttagaagacttggagaaaaggatgagaaattttatatggagtggagatttaaaccaaagaaagcttgtaa |
115 |
Q |
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| T |
38359101 |
attaccatctattcttggacagttaaacttttaaaagacttggagaaaaggatgagaaattttatatggagtggagatttaaaccaaagaaagcttgta- |
38359199 |
T |
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| Q |
116 |
ttattattgctcggaacaaagtttgtacgcccttaaaagagggaggcttaggagttagaaatctttcagatatcagtgaa |
195 |
Q |
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| T |
38359200 |
--attattgcttggaacaaagtttgtacgcctttaaaagagggaggcttaggagttagaaatctttcagatatcaatgaa |
38359277 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 11983655 - 11983753
Alignment:
| Q |
17 |
ttaccatctattcttggacagttaaacttttagaagacttggagaaaaggatgagaaattttatatggagtggagatttaaaccaaagaaagcttgtaa |
115 |
Q |
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| T |
11983655 |
ttaccatctattctgggccagttaaactcataaaagatttggaaaaatggatgagaaactttatttggagtggatatattaatcagagaaagcttgtaa |
11983753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 31207 - 31159
Alignment:
| Q |
66 |
gatgagaaattttatatggagtggagatttaaaccaaagaaagcttgta |
114 |
Q |
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| T |
31207 |
gatgagaaattttatatggagtggagttgtgaacaaaagaaagcttgta |
31159 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 5151652 - 5151564
Alignment:
| Q |
20 |
ccatctattcttggacagttaaacttttagaagacttggagaaaaggatgagaaattttatatggagtggagatttaaaccaaagaaag |
108 |
Q |
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| T |
5151652 |
ccatctattcttggccagttaaacttttaaaggatatggaaaaatggatgagaaacttcatatggtttggtgatgtaaatcaaagaaag |
5151564 |
T |
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