View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12676_high_3 (Length: 241)
Name: NF12676_high_3
Description: NF12676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12676_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7299073 - 7299282
Alignment:
| Q |
1 |
caagtaaattggctacatagaaaatgactttaaaccaaaatggtcccaacttttcataccataataaaccaactagcaaaagcatcatttttcctaagca |
100 |
Q |
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| T |
7299073 |
caagtaaattggctacatagaaaatgactttaaaccaaaatggtcccaacttttcataccataataaaccaactagcaaaagcatcatttttcctaagca |
7299172 |
T |
|
| Q |
101 |
ataataattccttttggagactcaaaagaatacacagattttgctcatttggttgtagtctctagtctactctctatgctgtggtgtgtgatctgcaaca |
200 |
Q |
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| T |
7299173 |
ataataattccttttggagactcaaaagaatacacagattttgctcatttggttgcag------------tctctatgctgtg--gtgtgatctgcaaca |
7299258 |
T |
|
| Q |
201 |
agcagagaaaaagttggttatctt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7299259 |
agcagagaaaaagttggttatctt |
7299282 |
T |
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