View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12676_low_1 (Length: 370)

Name: NF12676_low_1
Description: NF12676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12676_low_1
NF12676_low_1
[»] chr1 (5 HSPs)
chr1 (69-353)||(7298693-7298978)
chr1 (1-48)||(7298617-7298664)
chr1 (1-120)||(47124620-47124742)
chr1 (78-111)||(6815264-6815297)
chr1 (78-111)||(28700026-28700059)
[»] chr4 (7 HSPs)
chr4 (1-120)||(11882950-11883067)
chr4 (69-120)||(33018664-33018715)
chr4 (72-120)||(33432739-33432787)
chr4 (72-121)||(35347298-35347347)
chr4 (78-114)||(23668224-23668260)
chr4 (79-115)||(52106253-52106289)
chr4 (69-120)||(23669246-23669297)
[»] chr8 (6 HSPs)
chr8 (1-54)||(34053192-34053245)
chr8 (69-119)||(34053125-34053175)
chr8 (69-120)||(9370102-9370153)
chr8 (78-111)||(9369095-9369128)
chr8 (78-111)||(9404158-9404191)
chr8 (78-111)||(9406319-9406352)
[»] chr6 (1 HSPs)
chr6 (69-118)||(6535301-6535350)
[»] chr3 (4 HSPs)
chr3 (1-117)||(12008925-12009049)
chr3 (1-55)||(47669194-47669248)
chr3 (1-47)||(51985886-51985932)
chr3 (69-120)||(51985799-51985850)
[»] chr5 (2 HSPs)
chr5 (69-120)||(43070209-43070260)
chr5 (1-54)||(43070134-43070187)
[»] chr7 (5 HSPs)
chr7 (1-43)||(26761474-26761516)
chr7 (87-120)||(26761390-26761423)
chr7 (69-121)||(47817419-47817471)
chr7 (79-115)||(41806607-41806643)
chr7 (78-114)||(47818448-47818484)
[»] chr2 (1 HSPs)
chr2 (78-111)||(11873284-11873317)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 69 - 353
Target Start/End: Original strand, 7298693 - 7298978
Alignment:
Q  69 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcctagtttcgatagtaaacttcaagtttgaatcaaattttaaaatgaaaa 168  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7298693 gaggtcatgcacggtaggagacctatataggtctcctaccctaaacgccgcctagtttcgatagtaaacttcaagtttgaatcaaattttaaaatcaaaa 7298792  T
Q  169 tcaattcttattgaaatcaccctaaataagtcaaaattttgtgtatgaaatcacttttatctctatctaccttaaaacc-aaatacacacctagacatag 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  7298793 tcaattcttattgaaatcaccctaaataagtcaaaattttgtgtatgaaatcccttttatctctatctaccttaaaaccaaaatacacacctagacatag 7298892  T
Q  268 agaggacacagaaatcaagttgcaagttggcatgaaagcatgcctgtgactgtgtaatgtatcccatatccttatccttctttggc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7298893 agaggacacagaaatcaagttgcaagttggcatgaaagcatgcctgtgactgtgtaatgtatcccatatccttatccttctttggc 7298978  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7298617 - 7298664
Alignment:
Q  1 tatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtca 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7298617 tatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtca 7298664  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 47124742 - 47124620
Alignment:
Q  1 tatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnn---gaggtcatgcacggtaggagacctataaa 97  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||| |||| ||                |||||||||||| |||| ||| |||||||    
T  47124742 tatttgatctatggtgtgttcaaccaatctaacggttaggaaaggtctgaagatcaaaaaaaaaaaaaaaagaggtcatgcacagtagaagatctataaa 47124643  T
Q  98 ggtctcccaccctaaacgccgcc 120  Q
    |||||||||||||||||||||||    
T  47124642 ggtctcccaccctaaacgccgcc 47124620  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 6815297 - 6815264
Alignment:
Q  78 cacggtaggagacctataaaggtctcccacccta 111  Q
    ||||||||||||||||| ||||||||||||||||    
T  6815297 cacggtaggagacctatcaaggtctcccacccta 6815264  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 28700026 - 28700059
Alignment:
Q  78 cacggtaggagacctataaaggtctcccacccta 111  Q
    ||||||||||||||||| ||||||||||||||||    
T  28700026 cacggtaggagacctattaaggtctcccacccta 28700059  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 11882950 - 11883067
Alignment:
Q  1 tatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||| |||||||             |||| |||||||||||||||||||||||||||    
T  11882950 tatttgatctatggtgtgttcaaccaatctaacggttaggaaaagtccgaaggtcaaaaaaaaaaa--gaggccatgcacggtaggagacctataaaggt 11883047  T
Q  101 ctcccaccctaaacgccgcc 120  Q
    ||||||||||||||||||||    
T  11883048 ctcccaccctaaacgccgcc 11883067  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 33018664 - 33018715
Alignment:
Q  69 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33018664 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 33018715  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 33432787 - 33432739
Alignment:
Q  72 gtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 120  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33432787 gtcatgcacggtaggagatctataaaggtctcccaccctaaacgccgcc 33432739  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 35347298 - 35347347
Alignment:
Q  72 gtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcct 121  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||    
T  35347298 gtcatgcacggtaggggacctataaaggtctcccaccctagacgcagcct 35347347  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 23668260 - 23668224
Alignment:
Q  78 cacggtaggagacctataaaggtctcccaccctaaac 114  Q
    ||||||||||||||||| |||||||||||||||||||    
T  23668260 cacggtaggagacctattaaggtctcccaccctaaac 23668224  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 52106253 - 52106289
Alignment:
Q  79 acggtaggagacctataaaggtctcccaccctaaacg 115  Q
    ||||||||||||||| |||||||||||||||||||||    
T  52106253 acggtaggagacctaaaaaggtctcccaccctaaacg 52106289  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 23669246 - 23669297
Alignment:
Q  69 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 120  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || |||||    
T  23669246 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 23669297  T

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Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34053245 - 34053192
Alignment:
Q  1 tatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggt 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34053245 tatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggt 34053192  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 34053175 - 34053125
Alignment:
Q  69 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgc 119  Q
    ||||| ||||| |||||||||||||||||||| |||||||||| |||||||    
T  34053175 gaggtaatgcatggtaggagacctataaaggtttcccaccctacacgccgc 34053125  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 9370102 - 9370153
Alignment:
Q  69 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 120  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || |||||    
T  9370102 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 9370153  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 9369128 - 9369095
Alignment:
Q  78 cacggtaggagacctataaaggtctcccacccta 111  Q
    ||||||||||||||||| ||||||||||||||||    
T  9369128 cacggtaggagacctattaaggtctcccacccta 9369095  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 9404191 - 9404158
Alignment:
Q  78 cacggtaggagacctataaaggtctcccacccta 111  Q
    ||||||||||||||||| ||||||||||||||||    
T  9404191 cacggtaggagacctattaaggtctcccacccta 9404158  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 9406352 - 9406319
Alignment:
Q  78 cacggtaggagacctataaaggtctcccacccta 111  Q
    ||||||||||||||||| ||||||||||||||||    
T  9406352 cacggtaggagacctattaaggtctcccacccta 9406319  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 6535301 - 6535350
Alignment:
Q  69 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6535301 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 6535350  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 12009049 - 12008925
Alignment:
Q  1 tatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc--------nnnnnnnnnnnnngaggtcatgcacggtaggagacct 92  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||                     ||||||||||||||||||||||||    
T  12009049 tatttgatctatggtgtgtttaaccaatctaacggttagaaaatgtcagaagatcaaaaaaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacct 12008950  T
Q  93 ataaaggtctcccaccctaaacgcc 117  Q
    |||||||||||||||||||||||||    
T  12008949 ataaaggtctcccaccctaaacgcc 12008925  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 47669194 - 47669248
Alignment:
Q  1 tatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc 55  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  47669194 tatttgatctctggtgtgtttaaccaatctaacggttaggaaatgtgagaaggtc 47669248  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 51985932 - 51985886
Alignment:
Q  1 tatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtc 47  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  51985932 tatttgatctatggtatgtttaaccaatctaacggttaggaaatgtc 51985886  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 51985850 - 51985799
Alignment:
Q  69 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 120  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  51985850 gaggtcatgtacggtaggagacctataaagatctcccaccctaaacaccgcc 51985799  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 43070209 - 43070260
Alignment:
Q  69 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 120  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43070209 gaggtcatgtacggtaggagacctataaaggtctcccaccctaaacgccgcc 43070260  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43070134 - 43070187
Alignment:
Q  1 tatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggt 54  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  43070134 tatttgatctatgatgtgtttaaccaatctaacggttaggaaaggtccgaaggt 43070187  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26761516 - 26761474
Alignment:
Q  1 tatttgatctatggtgtgtttaaccaatctaacggttaggaaa 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26761516 tatttgatctatggtgtgtttaaccaatctaacggttaggaaa 26761474  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 26761423 - 26761390
Alignment:
Q  87 agacctataaaggtctcccaccctaaacgccgcc 120  Q
    ||||||||||||||||||||||||||||||||||    
T  26761423 agacctataaaggtctcccaccctaaacgccgcc 26761390  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 47817471 - 47817419
Alignment:
Q  69 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcct 121  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || ||||||    
T  47817471 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcct 47817419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 41806643 - 41806607
Alignment:
Q  79 acggtaggagacctataaaggtctcccaccctaaacg 115  Q
    |||||||||||||||  ||||||||||||||||||||    
T  41806643 acggtaggagacctaagaaggtctcccaccctaaacg 41806607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 47818448 - 47818484
Alignment:
Q  78 cacggtaggagacctataaaggtctcccaccctaaac 114  Q
    ||||||||||||||| | |||||||||||||||||||    
T  47818448 cacggtaggagacctgttaaggtctcccaccctaaac 47818484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 11873317 - 11873284
Alignment:
Q  78 cacggtaggagacctataaaggtctcccacccta 111  Q
    ||||||||||||||||| ||||||||||||||||    
T  11873317 cacggtaggagacctatcaaggtctcccacccta 11873284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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